Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015323

Physical Location & Seq

Genomic Coordinates Reverse (-)

29975925 .. 29977852

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGTTGGTTGTGATTTGCGGGCAGCCCTGCAGTGGGAAGTCAATGGCTGCCGCCTGCCTAGCTGAGGCTCTGAAAGAATCAGGGTCGAATCATACAGTCAGGGTTATTGATGAAACTTTGTTTCATCTTGACCGTAATCAGAGCTATGCTAATATGCCTGCGGAGAAGAACTTAAGAGGGGTGCTGAGATCTGAAGTTGATAGATCGGTGTCAAGAGACAGTATCATTATAGTAGATTCTTTGAATAGCATCAAGGGGTATAGGTATGAGCTGTGGTGTTTGGCTCGTGCTGCGGGAATAAGGTATTGTGTGGTATATTGTGATGCTGGTGAAACCCATTGTAGAAAGTGGAATGAGGAGCGTAGGGAGAAGGGAGAAGATGCATACAATGATAAGATTTTTGAAGATTTGGTAAGAAGGTTTGAGACACCAGATAGAAGAAATCGGTGGGATTCTCCTTTGTTTGAGTTATGGCCACATAGAGAAGGTATAGTAGGATCTTCAGCTGCTATTCTAGATGCGATTCTGTATCTAACTAAGAAGGTGGACTCAAAGACGCGGGATGTGAAAACTTTACAGCCAACTATTGCAACACAGAACACACGGTTTTCTGAGGCGAACTCTCTGTATGAGTTGGACCGAGCAACACAAGAGGTGTCCAATGCTATTGTGGAAGCACAATCACAGGCACTTGGAGGGCCTTTAAATGGAGTTTCGGTTGGTCAGGGGCTACCACCTATCAATATTTCTAGACCAGTAGGGCTTCCAGAGCTACGAAGCTTGAGGCGAACTTTCATAAAATTGACAGGGCAAACGAGTTTAAGTGGGCGACCGCCACCTTCTGATGCAGACAGCGCAAAGAGGATGTTTGTTGATTACTTGAACAGGGAATTGGCAAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010449 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0019219 GO:0019222 GO:0022622 GO:0030488 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034470 GO:0034641 GO:0034660 GO:0035266 GO:0040007 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080178 GO:0090304 GO:0099402 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KTI12

Protein Analysis

303

Amino Acids

33.73

Weight (kDa)

8.12

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KTI12	PF08433	1 - 296	3.3e-80	Chromatin associated protein KTI12
AAA_33	PF13671	3 - 145	2.4e-14	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13870
fragaria_vesca	FvH4_4g30260 FvH4_4g30260
malus_domestica	MD16G1062500.v1.1
prunus_persica	Prupe.1G285000_v2.0.a1
pyrus_communis	pycom16g05460
rosa_chinensis	RchiOBHm_Chr4g0438561
rosa_laevigata	RLG00000006351
rosa_roxburghii	Rroxscaffold_5G00379570
rosa_rugosa	Rorug04G0311500
rosa_samantha	Rh4AG361900 Rh4BG373300 Rh4CG387200 Rh4DG368000
rosa_wichuraiana	Rw0G006660 Rw0G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	562
AciI	CCGC	6 cut(s)	21, 54, 164, 296, 562, 836
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	476
AcuI	CTGAAG	2 cut(s)	216, 489
AfiI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
AflII	CTTAAG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	247, 407, 886
AjuI	GAANNNNNNNTTGG	1 cut(s)	878
AluBI	AGCT	6 cut(s)	65, 147, 274, 509, 775, 783
AluI	AGCT	6 cut(s)	65, 147, 274, 509, 775, 783
Alw26I	GTCTC	2 cut(s)	213, 422
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	2 cut(s)	476, 701
ApeKI	GCWGC	4 cut(s)	25, 50, 293, 509
AspLEI	GCGC	1 cut(s)	860
AspS9I	GGNCC	2 cut(s)	640, 701
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	478
BauI	CACGAG	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	37, 37, 280, 496
BcoDI	GTCTC	2 cut(s)	213, 422
BfaI	CTAG	3 cut(s)	62, 518, 753
BfmI	CTRYAG	1 cut(s)	31
BfrI	CTTAAG	1 cut(s)	175
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	5 cut(s)	26, 51, 54, 294, 510
BlsI	GCNGC	5 cut(s)	27, 52, 55, 295, 511
Bme18I	GGWCC	1 cut(s)	640
BmgT120I	GGNCC	2 cut(s)	640, 701
BmsI	GCATC	5 cut(s)	261, 316, 373, 511, 838
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	805
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
Bse1I	ACTGG	1 cut(s)	758
BseGI	GGATG	2 cut(s)	571, 873
BseLI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
BseMII	CTCAG	3 cut(s)	57, 179, 606
BseNI	ACTGG	1 cut(s)	758
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	4 cut(s)	37, 37, 280, 496
Bsh1236I	CGCG	1 cut(s)	562
Bsh1285I	CGRYCG	1 cut(s)	836
BshFI	GGCC	2 cut(s)	478, 703
BsiEI	CGRYCG	1 cut(s)	836
BslI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
BsmAI	GTCTC	2 cut(s)	213, 422
BsnI	GGCC	2 cut(s)	478, 703
Bsp143I	GATC	3 cut(s)	191, 206, 500
BspACI	CCGC	6 cut(s)	21, 54, 164, 296, 562, 836
BspANI	GGCC	2 cut(s)	478, 703
BspCNI	CTCAG	3 cut(s)	58, 180, 607
BspFNI	CGCG	1 cut(s)	562
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	1 cut(s)	508
BspTI	CTTAAG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	758
BssMI	GATC	3 cut(s)	191, 206, 500
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	4 cut(s)	100, 137, 224, 609
BstAFI	CTTAAG	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	23, 58, 162
BstDEI	CTNAG	4 cut(s)	66, 188, 540, 615
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	571, 873
BstFNI	CGCG	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	860
BstKTI	GATC	3 cut(s)	194, 209, 503
BstMAI	GTCTC	2 cut(s)	213, 422
BstMBI	GATC	3 cut(s)	191, 206, 500
BstMCI	CGRYCG	1 cut(s)	836
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 293, 772, 857
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	4 cut(s)	37, 37, 280, 496
BstX2I	RGATCY	2 cut(s)	191, 500
BstYI	RGATCY	2 cut(s)	191, 500
BsuRI	GGCC	2 cut(s)	478, 703
BtsCI	GGATG	2 cut(s)	571, 873
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	23, 58, 162
CfoI	GCGC	1 cut(s)	860
Cfr13I	GGNCC	2 cut(s)	640, 701
CseI	GACGC	1 cut(s)	568
DdeI	CTNAG	4 cut(s)	66, 188, 540, 615
DpnI	GATC	3 cut(s)	193, 208, 502
DpnII	GATC	3 cut(s)	191, 206, 500
DraI	TTTAAA	1 cut(s)	708
EaeI	YGGCCR	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	640
Eco57I	CTGAAG	2 cut(s)	216, 489
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	701
EcoT22I	ATGCAT	1 cut(s)	388
FauI	CCCGC	3 cut(s)	14, 289, 555
Fnu4HI	GCNGC	5 cut(s)	26, 51, 54, 294, 510
FokI	GGATG	2 cut(s)	578, 880
Fsp4HI	GCNGC	5 cut(s)	26, 51, 54, 294, 510
FspBI	CTAG	3 cut(s)	62, 518, 753
GlaI	GCGC	1 cut(s)	859
GluI	GCNGC	5 cut(s)	26, 51, 54, 294, 510
HaeIII	GGCC	2 cut(s)	478, 703
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	1 cut(s)	860
Hin6I	GCGC	1 cut(s)	858
HinP1I	GCGC	1 cut(s)	858
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	6 cut(s)	80, 91, 239, 455, 526, 551
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	5 cut(s)	75, 144, 196, 616, 847
Hpy188III	TCNNGA	5 cut(s)	131, 216, 518, 753, 770
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	5 cut(s)	367, 414, 482, 538, 852
HpyCH4III	ACNGT	4 cut(s)	100, 137, 224, 609
HpyCH4V	TGCA	4 cut(s)	33, 386, 593, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 293, 772, 857
HpyF3I	CTNAG	4 cut(s)	66, 188, 540, 615
HspAI	GCGC	1 cut(s)	858
Kzo9I	GATC	3 cut(s)	191, 206, 500
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	4 cut(s)	37, 37, 280, 496
LweI	GCATC	5 cut(s)	261, 316, 373, 511, 838
MaeI	CTAG	3 cut(s)	62, 518, 753
MalI	GATC	3 cut(s)	193, 208, 502
MboI	GATC	3 cut(s)	191, 206, 500
MboII	GAAGA	5 cut(s)	181, 392, 419, 453, 495
MflI	RGATCY	2 cut(s)	191, 500
MlsI	TGGCCA	1 cut(s)	478
MluCI	AATT	2 cut(s)	803, 893
MluNI	TGGCCA	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	8 cut(s)	61, 173, 352, 610, 649, 692, 780, 858
Mox20I	TGGCCA	1 cut(s)	478
Mph1103I	ATGCAT	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	478
MseI	TTAA	3 cut(s)	176, 707, 824
Msp20I	TGGCCA	1 cut(s)	478
MspA1I	CMGCKG	1 cut(s)	509
MspCI	CTTAAG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	4 cut(s)	62, 293, 772, 857
NdeII	GATC	3 cut(s)	191, 206, 500
NsiI	ATGCAT	1 cut(s)	388
PfeI	GAWTC	5 cut(s)	80, 91, 239, 455, 526
PkrI	GCNGC	5 cut(s)	27, 52, 55, 295, 511
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PspPI	GGNCC	2 cut(s)	640, 701
PstI	CTGCAG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	191, 500
PvuII	CAGCTG	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	176, 707, 824
SatI	GCNGC	5 cut(s)	26, 51, 54, 294, 510
Sau3AI	GATC	3 cut(s)	191, 206, 500
Sau96I	GGNCC	2 cut(s)	640, 701
SchI	GAGTC	1 cut(s)	545
SfaNI	GCATC	5 cut(s)	261, 316, 373, 511, 838
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	640
SmlI	CTYRAG	2 cut(s)	175, 784
SmoI	CTYRAG	2 cut(s)	175, 784
Sse9I	AATT	2 cut(s)	803, 893
SsiI	CCGC	6 cut(s)	21, 54, 164, 296, 562, 836
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	62, 518, 753
TaaI	ACNGT	4 cut(s)	100, 137, 224, 609
TaqI	TCGA	1 cut(s)	89
TaqII	GACCGA	1 cut(s)	657
TasI	AATT	2 cut(s)	803, 893
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	5 cut(s)	80, 91, 239, 455, 526
Tru1I	TTAA	3 cut(s)	176, 707, 824
Tru9I	TTAA	3 cut(s)	176, 707, 824
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	4 cut(s)	25, 50, 293, 509
TspDTI	ATGAA	3 cut(s)	116, 129, 787
TspRI	CASTG	1 cut(s)	40
Vha464I	CTTAAG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	640
XagI	CCTNNNNNAGG	1 cut(s)	65
XbaI	TCTAGA	2 cut(s)	517, 752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XspI	CTAG	3 cut(s)	62, 518, 753
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.