Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015323

Physical Location & Seq

Genomic Coordinates Reverse (-)

4447446 .. 4449491

Gene Structure 2046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1062500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCATTGGTTGTGATTTGTGGACAACCATGCAGTGGGAAGTCGAAGGCTGCGCTCTGCCTGGCCGTGGCTCTCAAGGAATCAGGATTGAACCAAATAGTTAGGGTTATTGACGAGACTTCCTTTCATCTTGACCGTAATGAAAGCTATGCCAATATGCCTGCAGAGAAGAATTTAAGAGGAGTGCTAAGATCTGAAGTCGATCGATCAGTGTCAAAAGACAGTGTCATAATTGTGGATTCTTTGAATAGCATCAAGGGTTACAGGTATGAATTGTGGTGTTTGGCTCGTGCAGCAGGAATCAGATACTGTGTTTTATTTTGCGATGCTGACGAAACCCATTGCAGAAAATGGAATGAAGAGCGCAGGGAGAAGGGAGAAGCTGCTTATAGTGATAAGATATTTGAAGATTTGGTGAGAAGGTTTGAGACACCGGAGAGAAGAAATCGGTGGGATTCCCCGATGTTTGAGTTGTGGCCACATAAAGAGGGAATAGAAAAAACTTCTGCTGCCATTCTAGATGCTGTTTCGTATTTGACAAAGAAGGCAGACGCAAAGTCACGGGATGTTAAAACTTTGCAGCCAACTATTGCAACACAGAACACACGTTTTTCCGAGGCAAATTCTCTGTATGAATTGGACAGAGCAACGCAGGAGGTGATCAGTGCTATAGTGGAAGCACAATCGCAAGCACTTGGAGGGCCTCTAAATGGAGTTTCTGTTGCTCAGGGGTTGCCACCTATCAATATTTCAAGATCAGTTGGGCTTCCAGAGCTTCGTAGGTTGAGGCGAACTTTCATAAAATTGACAGGGCAAACGAGTTTAAGTGGGCGACCTCCACCTTCTGATGCAGACAGTGCAAAGAGGATGTTTGTTGATTACTTGAACAGGGAACTGGAAACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010449 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0019219 GO:0019222 GO:0022622 GO:0030488 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034470 GO:0034641 GO:0034660 GO:0035266 GO:0040007 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080178 GO:0090304 GO:0099402 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KTI12

Protein Analysis

303

Amino Acids

33.83

Weight (kDa)

8.41

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KTI12	PF08433	1 - 296	4.9e-80	Chromatin associated protein KTI12
AAA_33	PF13671	3 - 145	2.1e-11	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13870
fragaria_vesca	FvH4_4g30260 FvH4_4g30260
malus_domestica	MD16G1062500.v1.1
prunus_persica	Prupe.1G285000_v2.0.a1
pyrus_communis	pycom16g05460
rosa_chinensis	RchiOBHm_Chr4g0438561
rosa_laevigata	RLG00000006351
rosa_roxburghii	Rroxscaffold_5G00379570
rosa_rugosa	Rorug04G0311500
rosa_samantha	Rh4AG361900 Rh4BG373300 Rh4CG387200 Rh4DG368000
rosa_wichuraiana	Rw0G006660 Rw0G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	35
AcoI	YGGCCR	2 cut(s)	63, 476
AcsI	RAATTY	2 cut(s)	172, 622
AcuI	CTGAAG	1 cut(s)	216
AfiI	CCNNNNNNNGG	3 cut(s)	35, 67, 710
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	5 cut(s)	91, 247, 407, 753, 886
AhdI	GACNNNNNGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	3 cut(s)	147, 383, 775
AluI	AGCT	3 cut(s)	147, 383, 775
Alw26I	GTCTC	2 cut(s)	110, 422
AlwNI	CAGNNNCTG	1 cut(s)	309
AoxI	GGCC	3 cut(s)	63, 476, 701
ApeKI	GCWGC	5 cut(s)	50, 293, 383, 509, 580
ApoI	RAATTY	2 cut(s)	172, 622
AspLEI	GCGC	2 cut(s)	55, 366
AspS9I	GGNCC	1 cut(s)	701
AsuHPI	GGTGA	2 cut(s)	427, 670
BalI	TGGCCA	1 cut(s)	478
BauI	CACGAG	1 cut(s)	288
BbvI	GCAGC	5 cut(s)	37, 305, 370, 496, 592
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	2 cut(s)	110, 422
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	2 cut(s)	162, 669
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	5 cut(s)	51, 294, 384, 510, 581
BlsI	GCNGC	5 cut(s)	52, 295, 385, 511, 582
Bme1390I	CCNGG	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	701
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	4 cut(s)	261, 316, 511, 838
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	66, 615
BsaWI	WCCGGW	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 67, 710
Bse1I	ACTGG	1 cut(s)	900
Bse3DI	GCAATG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	66, 615
BseGI	GGATG	2 cut(s)	571, 873
BseLI	CCNNNNNNNGG	3 cut(s)	35, 67, 710
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	740
BseNI	ACTGG	1 cut(s)	900
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	5 cut(s)	37, 305, 370, 496, 592
BsgI	GTGCAG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	65, 478, 703
BshVI	ATCGAT	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	35, 67, 710
BsmAI	GTCTC	2 cut(s)	110, 422
BsnI	GGCC	3 cut(s)	65, 478, 703
Bsp143I	GATC	5 cut(s)	191, 202, 206, 660, 755
BspANI	GGCC	3 cut(s)	65, 478, 703
BspCNI	CTCAG	1 cut(s)	739
BspDI	ATCGAT	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	900
BssECI	CCNNGG	2 cut(s)	66, 615
BssMI	GATC	5 cut(s)	191, 202, 206, 660, 755
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	4 cut(s)	137, 224, 311, 857
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstC8I	GCNNGC	2 cut(s)	162, 690
BstDEI	CTNAG	2 cut(s)	188, 726
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	571, 873
BstHHI	GCGC	2 cut(s)	55, 366
BstKTI	GATC	5 cut(s)	194, 205, 209, 663, 758
BstMAI	GTCTC	2 cut(s)	110, 422
BstMBI	GATC	5 cut(s)	191, 202, 206, 660, 755
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 772, 857
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	2 cut(s)	162, 669
BstV1I	GCAGC	5 cut(s)	37, 305, 370, 496, 592
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	65, 478, 703
BsuTUI	ATCGAT	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	571, 873
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	5 cut(s)	40, 216, 229, 670, 862
Cac8I	GCNNGC	2 cut(s)	162, 690
CaiI	CAGNNNCTG	1 cut(s)	309
CfoI	GCGC	2 cut(s)	55, 366
Cfr13I	GGNCC	1 cut(s)	701
ClaI	ATCGAT	1 cut(s)	205
CseI	GACGC	1 cut(s)	560
CviAII	CATG	1 cut(s)	30
DdeI	CTNAG	2 cut(s)	188, 726
DpnI	GATC	5 cut(s)	193, 204, 208, 662, 757
DpnII	GATC	5 cut(s)	191, 202, 206, 660, 755
DriI	GACNNNNNGTC	1 cut(s)	556
EaeI	YGGCCR	2 cut(s)	63, 476
Eam1104I	CTCTTC	1 cut(s)	354
Eam1105I	GACNNNNNGTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	33
FatI	CATG	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	5 cut(s)	51, 294, 384, 510, 581
FokI	GGATG	2 cut(s)	578, 880
Fsp4HI	GCNGC	5 cut(s)	51, 294, 384, 510, 581
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	2 cut(s)	54, 365
GluI	GCNGC	5 cut(s)	51, 294, 384, 510, 581
HaeIII	GGCC	3 cut(s)	65, 478, 703
HapII	CCGG	1 cut(s)	434
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	2 cut(s)	55, 366
Hin1II	CATG	1 cut(s)	33
Hin6I	GCGC	2 cut(s)	53, 364
HinP1I	GCGC	2 cut(s)	53, 364
HinfI	GANTC	4 cut(s)	80, 239, 300, 455
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	427, 670
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	4 cut(s)	196, 305, 616, 847
Hpy188III	TCNNGA	5 cut(s)	84, 131, 518, 753, 770
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	5 cut(s)	40, 367, 414, 538, 852
HpyCH4III	ACNGT	4 cut(s)	137, 224, 311, 857
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	8 cut(s)	33, 164, 293, 345, 580, 593, 851, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 772, 857
HpyF3I	CTNAG	2 cut(s)	188, 726
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	1 cut(s)	33
HspAI	GCGC	2 cut(s)	53, 364
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	5 cut(s)	191, 202, 206, 660, 755
LguI	GCTCTTC	1 cut(s)	354
Lsp1109I	GCAGC	5 cut(s)	37, 305, 370, 496, 592
LweI	GCATC	4 cut(s)	261, 316, 511, 838
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	2 cut(s)	260, 558
MalI	GATC	5 cut(s)	193, 204, 208, 662, 757
MboI	GATC	5 cut(s)	191, 202, 206, 660, 755
MboII	GAAGA	4 cut(s)	181, 371, 419, 453
MflI	RGATCY	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	478
MluCI	AATT	6 cut(s)	172, 231, 272, 622, 635, 803
MluNI	TGGCCA	1 cut(s)	478
MnlI	CCTC	9 cut(s)	173, 481, 610, 649, 692, 714, 780, 846, 858
Mox20I	TGGCCA	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	478
MseI	TTAA	3 cut(s)	176, 570, 824
MslI	CAYNNNNRTG	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	478
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	293, 772, 857
NdeII	GATC	5 cut(s)	191, 202, 206, 660, 755
NlaIII	CATG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	80, 239, 300, 455
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	52, 295, 385, 511, 582
Ple19I	CGATCG	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	701
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	176, 570, 824
SatI	GCNGC	5 cut(s)	51, 294, 384, 510, 581
Sau3AI	GATC	5 cut(s)	191, 202, 206, 660, 755
Sau96I	GGNCC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	62
SfaNI	GCATC	4 cut(s)	261, 316, 511, 838
SfcI	CTRYAG	2 cut(s)	162, 669
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	6 cut(s)	172, 231, 272, 622, 635, 803
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	137, 224, 311, 857
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	3 cut(s)	44, 201, 205
TasI	AATT	6 cut(s)	172, 231, 272, 622, 635, 803
TfiI	GAWTC	4 cut(s)	80, 239, 300, 455
Tru1I	TTAA	3 cut(s)	176, 570, 824
Tru9I	TTAA	3 cut(s)	176, 570, 824
TscAI	CASTG	5 cut(s)	40, 216, 229, 670, 862
TseFI	GTSAC	1 cut(s)	558
TseI	GCWGC	5 cut(s)	50, 293, 383, 509, 580
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	6 cut(s)	116, 156, 285, 372, 648, 787
TspRI	CASTG	5 cut(s)	40, 216, 229, 670, 862
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	35
XapI	RAATTY	2 cut(s)	172, 622
XbaI	TCTAGA	1 cut(s)	517
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.