Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015323

Physical Location & Seq

Genomic Coordinates Forward (+)

6464254 .. 6467639

Gene Structure 3386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006351

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTGCATAACAAAACCTCTTGAGTCTCCCCAATTTCAAAGCAAAGTATCAATCTTGGGATCTTTGAGCTTCTTCCAGTTTCAGCTAAAACCACCGAAAACAGCTACTGTAGTATCACTACTGAATCAGAAGAAGTTGGCATTGATTTTTGGTTGGACTGGGAAGTCAATGGCTGCCGTCTGCCTAGCTGAGGCTCTCAAAGAATCCGGGTCGAATCATACAGTCAGGGTTATTGATGAAACTTCCTTTCATCTTGACCGCAATCAGAGCTATGCCAATATGCCTGCGGAGAAGAATTTAAGAGGGGTGCTGAGATCTGAAGTTGATAGATCGGTGTCAAGAGACAGTATCATAATAGTAGATTCTTTGAATAGTATCAAGGGTTATAGGTACGAGCTGTGGTGTTTGGCTCGTGCTGCAGGAATAAGGTATTGTGTGGTATATTGTGATGCTGATGAAACCCATTGTAGAAAATGGAATGAGGAGTGCAGGGAGAAGGGAGAAGATGCTTATGATGATAAGATTTTTGAAGATTTGGTAAGGAGATTTGAGACACCAGATAGAAGAAATCGGTGGGATTCCCCTTTGTTTGAGTTATGGCCACATAGAGAAGGTATAGTAGGATCTTCTGCTGCCATTCTGGATGCGATTTCGTATCTGACAAAGAAGGTGGACTCAAAGACACGGGATGTTAAAACTTTGCAGCCAACTATCGCAACACAGAACACACGGTTTTCTGAGGCAAACTCTCTGTATGAGTTGGACCGAGCTACACAGGAGGTGTCCAATGCAATTGTGGAAGCACAATCACAGGCACTTGGAGGACCTTTAAATGGAGTTTCTGTTGGTCAGGGGTTACCACCTATCAATATTTCTAGACCAGTAGGGCTTCCAGAGCTTCGAAGCTTGCGGCGAACTTTCATAAAATTGACAGGGCAAACGAGTTTAAGTGGGCGACCGCCACCTTCTGATGCAGACAGTGCAAAGAGGATGTTTGTTGATTACTTGAACAGGGAACTGGCAAATGCGGCTTTGAATCTCACTCTTCAACGACCCAGTACCAGGTCGGACTTGGTTGATCACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010449 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0019219 GO:0019222 GO:0022622 GO:0030488 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034470 GO:0034641 GO:0034660 GO:0035266 GO:0040007 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080178 GO:0090304 GO:0099402 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KTI12

Protein Analysis

363

Amino Acids

40.57

Weight (kDa)

8.59

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KTI12	PF08433	53 - 337	1.6e-71	Chromatin associated protein KTI12
AAA_33	PF13671	86 - 186	2.7e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13870
fragaria_vesca	FvH4_4g30260 FvH4_4g30260
malus_domestica	MD16G1062500.v1.1
prunus_persica	Prupe.1G285000_v2.0.a1
pyrus_communis	pycom16g05460
rosa_chinensis	RchiOBHm_Chr4g0438561
rosa_laevigata	RLG00000006351
rosa_roxburghii	Rroxscaffold_5G00379570
rosa_rugosa	Rorug04G0311500
rosa_samantha	Rh4AG361900 Rh4BG373300 Rh4CG387200 Rh4DG368000
rosa_wichuraiana	Rw0G006660 Rw0G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AciI	CCGC	5 cut(s)	259, 287, 910, 959, 1028
AclWI	GGATC	2 cut(s)	67, 631
AcoI	YGGCCR	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	392, 1060
AfiI	CCNNNNNNNGG	3 cut(s)	190, 833, 1062
AgsI	TTSAA	6 cut(s)	38, 370, 530, 1009, 1036, 1049
AjnI	CCWGG	1 cut(s)	1061
AluBI	AGCT	9 cut(s)	69, 85, 104, 188, 270, 397, 770, 898, 906
AluI	AGCT	9 cut(s)	69, 85, 104, 188, 270, 397, 770, 898, 906
Alw26I	GTCTC	3 cut(s)	30, 336, 545
AlwI	GGATC	2 cut(s)	67, 631
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	4 cut(s)	173, 416, 632, 703
ApoI	RAATTY	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	763, 824
AsuC2I	CCSGG	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	901
AvaII	GGWCC	2 cut(s)	763, 824
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BalI	TGGCCA	1 cut(s)	601
BauI	CACGAG	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	160, 403, 619, 715
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	1063
BclI	TGATCA	1 cut(s)	1078
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	30, 336, 545
BfaI	CTAG	2 cut(s)	185, 876
BfmI	CTRYAG	2 cut(s)	108, 417
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	6 cut(s)	174, 417, 633, 704, 911, 1029
BlsI	GCNGC	6 cut(s)	175, 418, 634, 705, 912, 1030
Bme1390I	CCNGG	2 cut(s)	208, 1063
Bme18I	GGWCC	2 cut(s)	763, 824
BmgT120I	GGNCC	2 cut(s)	763, 824
BmrFI	CCNGG	2 cut(s)	208, 1063
BmrI	ACTGGG	2 cut(s)	168, 1050
BmsI	GCATC	4 cut(s)	439, 496, 634, 961
BmuI	ACTGGG	2 cut(s)	168, 1050
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	901
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 833, 1062
Bse1I	ACTGG	5 cut(s)	76, 163, 881, 1023, 1056
BseBI	CCWGG	1 cut(s)	1063
BseGI	GGATG	3 cut(s)	649, 694, 996
BseLI	CCNNNNNNNGG	3 cut(s)	190, 833, 1062
BseMII	CTCAG	3 cut(s)	180, 302, 729
BseNI	ACTGG	5 cut(s)	76, 163, 881, 1023, 1056
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	160, 403, 619, 715
BsgI	GTGCAG	1 cut(s)	508
Bsh1285I	CGRYCG	1 cut(s)	959
BshFI	GGCC	1 cut(s)	601
BsiEI	CGRYCG	1 cut(s)	959
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	3 cut(s)	190, 833, 1062
BsmAI	GTCTC	3 cut(s)	30, 336, 545
BsnI	GGCC	1 cut(s)	601
Bsp119I	TTCGAA	1 cut(s)	901
Bsp143I	GATC	5 cut(s)	59, 314, 329, 623, 1078
BspACI	CCGC	5 cut(s)	259, 287, 910, 959, 1028
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	3 cut(s)	181, 303, 730
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	2 cut(s)	67, 631
BspT104I	TTCGAA	1 cut(s)	901
BsrI	ACTGG	5 cut(s)	76, 163, 881, 1023, 1056
BssMI	GATC	5 cut(s)	59, 314, 329, 623, 1078
BssSI	CACGAG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	1063
Bst4CI	ACNGT	5 cut(s)	109, 223, 347, 732, 980
Bst6I	CTCTTC	1 cut(s)	1050
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstBI	TTCGAA	1 cut(s)	901
BstC8I	GCNNGC	2 cut(s)	285, 908
BstDEI	CTNAG	3 cut(s)	189, 311, 738
BstEII	GGTNACC	1 cut(s)	855
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	3 cut(s)	649, 694, 996
BstKTI	GATC	5 cut(s)	62, 317, 332, 626, 1081
BstMAI	GTCTC	3 cut(s)	30, 336, 545
BstMBI	GATC	5 cut(s)	59, 314, 329, 623, 1078
BstMCI	CGRYCG	1 cut(s)	959
BstMWI	GCNNNNNNNGC	5 cut(s)	267, 416, 895, 980, 1028
BstNI	CCWGG	1 cut(s)	1063
BstPI	GGTNACC	1 cut(s)	855
BstSCI	CCNGG	2 cut(s)	206, 1061
BstSFI	CTRYAG	2 cut(s)	108, 417
BstV1I	GCAGC	4 cut(s)	160, 403, 619, 715
BstX2I	RGATCY	3 cut(s)	59, 314, 623
BstYI	RGATCY	3 cut(s)	59, 314, 623
BsuRI	GGCC	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	649, 694, 996
BtsIMutI	CAGTG	1 cut(s)	985
Cac8I	GCNNGC	2 cut(s)	285, 908
CaiI	CAGNNNCTG	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	763, 824
CsiI	ACCWGGT	1 cut(s)	1061
Csp6I	GTAC	2 cut(s)	391, 1059
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviQI	GTAC	2 cut(s)	391, 1059
DdeI	CTNAG	3 cut(s)	189, 311, 738
DpnI	GATC	5 cut(s)	61, 316, 331, 625, 1080
DpnII	GATC	5 cut(s)	59, 314, 329, 623, 1078
DraI	TTTAAA	1 cut(s)	831
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	1050
EarI	CTCTTC	1 cut(s)	1050
Eco47I	GGWCC	2 cut(s)	763, 824
Eco57I	CTGAAG	1 cut(s)	339
Eco91I	GGTNACC	1 cut(s)	855
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	824
EcoO65I	GGTNACC	1 cut(s)	855
EcoRII	CCWGG	1 cut(s)	1061
FbaI	TGATCA	1 cut(s)	1078
Fnu4HI	GCNGC	6 cut(s)	174, 417, 633, 704, 911, 1029
FokI	GGATG	3 cut(s)	656, 701, 1003
Fsp4HI	GCNGC	6 cut(s)	174, 417, 633, 704, 911, 1029
FspBI	CTAG	2 cut(s)	185, 876
GluI	GCNGC	6 cut(s)	174, 417, 633, 704, 911, 1029
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	904
HinfI	GANTC	8 cut(s)	23, 124, 203, 214, 362, 578, 674, 1036
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	7 cut(s)	129, 267, 319, 660, 739, 970, 1069
Hpy188III	TCNNGA	6 cut(s)	20, 254, 339, 641, 876, 893
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	4 cut(s)	490, 605, 661, 975
HpyCH4III	ACNGT	5 cut(s)	109, 223, 347, 732, 980
HpyCH4V	TGCA	7 cut(s)	6, 419, 489, 703, 791, 974, 983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	267, 416, 895, 980, 1028
HpyF3I	CTNAG	3 cut(s)	189, 311, 738
Ksp22I	TGATCA	1 cut(s)	1078
Kzo9I	GATC	5 cut(s)	59, 314, 329, 623, 1078
Lsp1109I	GCAGC	4 cut(s)	160, 403, 619, 715
LweI	GCATC	4 cut(s)	439, 496, 634, 961
MabI	ACCWGGT	1 cut(s)	1061
MaeI	CTAG	2 cut(s)	185, 876
MaeIII	GTNAC	1 cut(s)	855
MalI	GATC	5 cut(s)	61, 316, 331, 625, 1080
MboI	GATC	5 cut(s)	59, 314, 329, 623, 1078
MboII	GAAGA	8 cut(s)	64, 142, 304, 515, 542, 576, 618, 1037
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	3 cut(s)	59, 314, 623
MlsI	TGGCCA	1 cut(s)	601
MluCI	AATT	4 cut(s)	32, 295, 792, 926
MluNI	TGGCCA	1 cut(s)	601
MlyI	GAGTC	2 cut(s)	32, 668
MmeI	TCCRAC	3 cut(s)	134, 741, 1047
MnlI	CCTC	8 cut(s)	27, 184, 296, 475, 733, 772, 815, 981
Mox20I	TGGCCA	1 cut(s)	601
MscI	TGGCCA	1 cut(s)	601
MseI	TTAA	4 cut(s)	299, 693, 830, 947
Msp20I	TGGCCA	1 cut(s)	601
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	208, 1063
MunI	CAATTG	1 cut(s)	792
MvaI	CCWGG	1 cut(s)	1063
MwoI	GCNNNNNNNGC	5 cut(s)	267, 416, 895, 980, 1028
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	5 cut(s)	59, 314, 329, 623, 1078
NspV	TTCGAA	1 cut(s)	901
PfeI	GAWTC	6 cut(s)	124, 203, 214, 362, 578, 1036
PkrI	GCNGC	6 cut(s)	175, 418, 634, 705, 912, 1030
PleI	GAGTC	2 cut(s)	31, 668
PpsI	GAGTC	2 cut(s)	31, 668
PpuMI	RGGWCCY	1 cut(s)	824
Psp5II	RGGWCCY	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	1061
PspEI	GGTNACC	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	1061
PspPI	GGNCC	2 cut(s)	763, 824
PspPPI	RGGWCCY	1 cut(s)	824
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	3 cut(s)	59, 314, 623
RsaI	GTAC	2 cut(s)	392, 1060
RsaNI	GTAC	2 cut(s)	391, 1059
SaqAI	TTAA	4 cut(s)	299, 693, 830, 947
SatI	GCNGC	6 cut(s)	174, 417, 633, 704, 911, 1029
Sau3AI	GATC	5 cut(s)	59, 314, 329, 623, 1078
Sau96I	GGNCC	2 cut(s)	763, 824
SchI	GAGTC	2 cut(s)	32, 668
ScrFI	CCNGG	2 cut(s)	208, 1063
SexAI	ACCWGGT	1 cut(s)	1061
SfaNI	GCATC	4 cut(s)	439, 496, 634, 961
SfcI	CTRYAG	2 cut(s)	108, 417
SfuI	TTCGAA	1 cut(s)	901
SinI	GGWCC	2 cut(s)	763, 824
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	4 cut(s)	32, 295, 792, 926
SsiI	CCGC	5 cut(s)	259, 287, 910, 959, 1028
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	2 cut(s)	185, 876
StyD4I	CCNGG	2 cut(s)	206, 1061
TaaI	ACNGT	5 cut(s)	109, 223, 347, 732, 980
TaqI	TCGA	2 cut(s)	212, 901
TaqII	GACCGA	1 cut(s)	780
TasI	AATT	4 cut(s)	32, 295, 792, 926
TauI	GCSGC	2 cut(s)	913, 1031
TfiI	GAWTC	6 cut(s)	124, 203, 214, 362, 578, 1036
Tru1I	TTAA	4 cut(s)	299, 693, 830, 947
Tru9I	TTAA	4 cut(s)	299, 693, 830, 947
TscAI	CASTG	1 cut(s)	985
TseI	GCWGC	4 cut(s)	173, 416, 632, 703
TspDTI	ATGAA	4 cut(s)	239, 252, 471, 910
TspRI	CASTG	1 cut(s)	985
VpaK11BI	GGWCC	2 cut(s)	763, 824
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	2 cut(s)	793, 1069
XspI	CTAG	2 cut(s)	185, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.