Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005971

Physical Location & Seq

Genomic Coordinates Reverse (-)

4961594 .. 4964515

Gene Structure 2922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAGGAATTCAGCATCCTATACCTCGCACTGTCGAAGAGGTTTTTAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGATGTACAGAAGTTTTACCATCAGTGTGACCCTGAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGGGAGGTTAATCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGGCATCAATTTCGCAAGGGACGGAATGCAAGAAAAAGACTGGATTTCTTTGGTTGCAGTTCACAGTGATTCATGGCTTATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGGAAGAGGCTCTTCCAGATGATAAATGATCTCCCAACCATTTTCGAGGTTGTAACTGGCAATGCAAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATCTAGTGGTGGCAAGCCTCGTCATTCTGAATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCAAGAAAAGAAGATGAGAGCGGAGATGAGGATGAAGATGACGAGCAAGGTGCTGTTTGTGGTGCGTGTGGCGACAACTATGGAGGAGATGAGTTCTGGATATGTTGTGATGCTTGCGAGAAATGGTTCCATGGGAAATGCGTGAAGATCACACCAGCAAAGGCTGAGCATATCAAACATTACAAATGCCCAAGTTGCACTACCAGCAAGAAAATGAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009653 GO:0009888 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0016036 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0035064 GO:0040007 GO:0042393 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0050896 GO:0051716 GO:0055065 GO:0055080 GO:0060560 GO:0065007 GO:0065008 GO:0071496 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098771 GO:0099402 GO:0140030 GO:0140034 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

252

Amino Acids

28.29

Weight (kDa)

5.88

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 138	4.1e-69	Alfin
PHD	PF00628	198 - 244	8e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14510 AT2G02470 AT2G02470
fragaria_vesca	FvH4_5g27363 FvH4_5g27363
malus_domestica	MD08G1249900.v1.1 MD15G1444600.v1.1
prunus_persica	Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1
pyrus_communis	pycom08g21630 pycom15g39160
rosa_chinensis	RchiOBHm_Chr7g0218621
rosa_laevigata	RLG00000002330
rosa_multiflora	Rmu_sc0001301.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240730
rosa_rugosa	Rorug07G0179000 Rorug07G0179000
rosa_samantha	Rh7CG336900
rosa_wichuraiana	Rw7G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	555
AciI	CCGC	1 cut(s)	555
AclWI	GGATC	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	9
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	133, 227
AgsI	TTSAA	1 cut(s)	519
AluBI	AGCT	2 cut(s)	71, 211
AluI	AGCT	2 cut(s)	71, 211
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	80, 161
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	444
ApaLI	GTGCAC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	9
Asp700I	GAANNNNTTC	2 cut(s)	9, 659
AspS9I	GGNCC	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	334
BccI	CCATC	1 cut(s)	123
BcgI	CGANNNNNNTGC	4 cut(s)	220, 254, 566, 600
BcoDI	GTCTC	2 cut(s)	80, 161
BfaI	CTAG	1 cut(s)	474
BlpI	GCTNAGC	1 cut(s)	699
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	201, 662
BmsI	GCATC	3 cut(s)	25, 240, 634
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	432, 664
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 227
Bse1I	ACTGG	2 cut(s)	272, 418
Bse3DI	GCAATG	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	432, 664
BseGI	GGATG	2 cut(s)	16, 571
BseLI	CCNNNNNNNGG	2 cut(s)	133, 227
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	3 cut(s)	120, 198, 690
BseNI	ACTGG	2 cut(s)	272, 418
BseRI	GAGGAG	2 cut(s)	209, 633
BseSI	GKGCMC	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	334
BslFI	GGGAC	3 cut(s)	185, 260, 511
BslI	CCNNNNNNNGG	2 cut(s)	133, 227
BsmAI	GTCTC	2 cut(s)	80, 161
BsmFI	GGGAC	3 cut(s)	185, 260, 511
BsmI	GAATGC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	385, 436, 681
Bsp1720I	GCTNAGC	1 cut(s)	699
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	1 cut(s)	555
BspCNI	CTCAG	3 cut(s)	121, 199, 691
BspLI	GGNNCC	2 cut(s)	201, 662
BspPI	GGATC	1 cut(s)	444
BspQI	GCTCTTC	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	272, 418
BssECI	CCNNGG	2 cut(s)	432, 664
BssMI	GATC	3 cut(s)	385, 436, 681
BssT1I	CCWWGG	2 cut(s)	432, 664
Bst4CI	ACNGT	3 cut(s)	34, 293, 458
Bst6I	CTCTTC	3 cut(s)	33, 356, 374
BstAUI	TGTACA	1 cut(s)	100
BstC8I	GCNNGC	2 cut(s)	485, 649
BstDEI	CTNAG	4 cut(s)	129, 207, 510, 699
BstDSI	CCRYGG	1 cut(s)	664
BstF5I	GGATG	2 cut(s)	16, 571
BstKTI	GATC	3 cut(s)	388, 439, 684
BstMAI	GTCTC	2 cut(s)	80, 161
BstMBI	GATC	3 cut(s)	385, 436, 681
BstMWI	GCNNNNNNNGC	2 cut(s)	729, 738
BstSLI	GKGCMC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	16, 571
BtsIMutI	CAGTG	3 cut(s)	30, 125, 298
Cac8I	GCNNGC	2 cut(s)	485, 649
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	101
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	3 cut(s)	171, 300, 665
CviJI	RGCY	9 cut(s)	71, 86, 211, 304, 367, 487, 515, 698, 755
CviKI_1	RGCY	9 cut(s)	71, 86, 211, 304, 367, 487, 515, 698, 755
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	4 cut(s)	129, 207, 510, 699
DpnI	GATC	3 cut(s)	387, 438, 683
DpnII	GATC	3 cut(s)	385, 436, 681
Eam1104I	CTCTTC	3 cut(s)	33, 356, 374
EarI	CTCTTC	3 cut(s)	33, 356, 374
Eco130I	CCWWGG	2 cut(s)	432, 664
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	9
EcoT14I	CCWWGG	2 cut(s)	432, 664
ErhI	CCWWGG	2 cut(s)	432, 664
FaeI	CATG	3 cut(s)	174, 303, 668
FaiI	YATR	8 cut(s)	23, 153, 172, 301, 615, 637, 666, 705
FalI	AAGNNNNNCTT	4 cut(s)	125, 157, 353, 385
FaqI	GGGAC	3 cut(s)	185, 260, 511
FatI	CATG	3 cut(s)	170, 299, 664
FokI	GGATG	2 cut(s)	3, 578
FspBI	CTAG	1 cut(s)	474
Hin1II	CATG	3 cut(s)	174, 303, 668
HinfI	GANTC	2 cut(s)	296, 500
Hpy166II	GTNNAC	2 cut(s)	289, 332
Hpy188I	TCNGA	2 cut(s)	341, 499
Hpy188III	TCNNGA	4 cut(s)	206, 215, 373, 631
Hpy8I	GTNNAC	2 cut(s)	289, 332
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	3 cut(s)	34, 293, 458
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	6 cut(s)	256, 284, 317, 332, 422, 732
HpyF10VI	GCNNNNNNNGC	2 cut(s)	729, 738
HpyF3I	CTNAG	4 cut(s)	129, 207, 510, 699
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	3 cut(s)	174, 303, 668
Kzo9I	GATC	3 cut(s)	385, 436, 681
LguI	GCTCTTC	1 cut(s)	374
LweI	GCATC	3 cut(s)	25, 240, 634
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	2 cut(s)	122, 409
MalI	GATC	3 cut(s)	387, 438, 683
MbiI	CCGCTC	1 cut(s)	555
MboI	GATC	3 cut(s)	385, 436, 681
MboII	GAAGA	7 cut(s)	50, 176, 361, 373, 557, 581, 691
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	2 cut(s)	9, 235
MroXI	GAANNNNTTC	2 cut(s)	9, 659
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	729, 738
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	3 cut(s)	385, 436, 681
NlaIII	CATG	3 cut(s)	174, 303, 668
NlaIV	GGNNCC	2 cut(s)	201, 662
NmuCI	GTSAC	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	2 cut(s)	9, 659
PfeI	GAWTC	2 cut(s)	296, 500
PpuMI	RGGWCCY	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	201, 662
PspPI	GGNCC	1 cut(s)	199
PspPPI	RGGWCCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	385, 436, 681
Sau96I	GGNCC	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	9 cut(s)	28, 45, 73, 180, 201, 213, 337, 408, 586
SfaNI	GCATC	3 cut(s)	25, 240, 634
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	9, 235
SsiI	CCGC	1 cut(s)	555
SspMI	CTAG	1 cut(s)	474
StyI	CCWWGG	2 cut(s)	432, 664
TaaI	ACNGT	3 cut(s)	34, 293, 458
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	36, 402
TasI	AATT	2 cut(s)	9, 235
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	2 cut(s)	296, 500
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	3 cut(s)	37, 125, 298
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	288, 582
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	3 cut(s)	37, 125, 298
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmnI	GAANNNNTTC	2 cut(s)	9, 659
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.