Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005971

Physical Location & Seq

Genomic Coordinates Reverse (-)

21064015 .. 21068469

Gene Structure 4455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGGGCATACCGCACCCAATACCTCGAACAGTGGAGGAAGTCTTCAGCGACTTCAGAGGCAGACGCGCCGGCTTGATTAAGGCCCTCACCAATGACGTTCAGAAGTTTTATCAACTGTGCGATCCTGAGAAGGAGAACTTGTGCCTGTATGGACTACCAAATGAGACATGGGAAGTTAACCTGCCTGTTGAGGAGGTTCCTCCTGAACTTCCCGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAGGACTGGTTGTCACTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCACGTTTTGGGTTTGGTAAGAATGAAAGGAAGAGACTTTTTCAGATGATAAATGATCTCCCCACCATATTTGAAGTTGTGACAGGAAATGCTAAACAACCAAAAGACCAATCTACTCCTCACAACAGTAGCAAGAACAAATCCAGTGGAAAGGGGTCTCGGCAGTCTGAGCACCCCCAGAGCAAAGGAGTAAAAATGTCTCCGCTGCCTAAAGAAGAGGATGAAAGCGGGGAAGAAGAAGAAGAAGATGATGAACAAGGCGCAACTTGCGGGGCTTGCGGAGACAACTATGGGGCTGATGAGTTCTGGATTTGCTGTGATGTGTGCGAGAGATGGTTCCATGGAAAATGCGTAAAGATTACACCTGCAAAGGCTGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAGCAAGAGGGCTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

254

Amino Acids

28.48

Weight (kDa)

5.3

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 138	3.6e-69	Alfin
PHD	PF00628	200 - 246	2.3e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14510 AT2G02470 AT2G02470
fragaria_vesca	FvH4_5g27363 FvH4_5g27363
malus_domestica	MD08G1249900.v1.1 MD15G1444600.v1.1
prunus_persica	Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1
pyrus_communis	pycom08g21630 pycom15g39160
rosa_chinensis	RchiOBHm_Chr7g0218621
rosa_laevigata	RLG00000002330
rosa_multiflora	Rmu_sc0001301.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240730
rosa_rugosa	Rorug07G0179000 Rorug07G0179000
rosa_samantha	Rh7CG336900
rosa_wichuraiana	Rw7G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	2 cut(s)	192, 703
AccII	CGCG	1 cut(s)	69
AciI	CCGC	5 cut(s)	14, 533, 558, 600, 609
AclWI	GGATC	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	31, 40
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	404
AhdI	GACNNNNNGTC	1 cut(s)	271
Alw21I	GWGCWC	2 cut(s)	334, 504
Alw26I	GTCTC	5 cut(s)	161, 358, 492, 534, 606
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	84
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	535
AspLEI	GCGC	2 cut(s)	71, 593
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	215
BaeGI	GKGCMC	2 cut(s)	334, 731
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	334, 504
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	2 cut(s)	242, 657
BcoDI	GTCTC	5 cut(s)	161, 358, 492, 534, 606
BfaI	CTAG	2 cut(s)	243, 753
BfuAI	ACCTGC	2 cut(s)	192, 703
BisI	GCNGC	1 cut(s)	536
BlpI	GCTNAGC	1 cut(s)	705
BlsI	GCNGC	1 cut(s)	537
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	201, 668
BmsI	GCATC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	705
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	272, 282, 474
BseDI	CCNNGG	1 cut(s)	670
BseGI	GGATG	3 cut(s)	253, 258, 556
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	3 cut(s)	120, 489, 696
BseNI	ACTGG	3 cut(s)	272, 282, 474
BseRI	GAGGAG	2 cut(s)	209, 438
BseSI	GKGCMC	2 cut(s)	334, 731
BseXI	GCAGC	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	334, 504
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	5 cut(s)	161, 358, 492, 534, 606
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	334, 504, 731
Bsp143I	GATC	2 cut(s)	124, 385
Bsp1720I	GCTNAGC	1 cut(s)	705
Bsp19I	CCATGG	1 cut(s)	670
BspACI	CCGC	5 cut(s)	14, 533, 558, 600, 609
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	3 cut(s)	121, 490, 697
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	201, 668
BspMI	ACCTGC	2 cut(s)	192, 703
BspPI	GGATC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	3 cut(s)	272, 282, 474
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	670
BssMI	GATC	2 cut(s)	124, 385
BssT1I	CCWWGG	1 cut(s)	670
Bst4CI	ACNGT	4 cut(s)	34, 120, 293, 458
Bst6I	CTCTTC	2 cut(s)	356, 540
BstC8I	GCNNGC	4 cut(s)	73, 222, 309, 607
BstDEI	CTNAG	3 cut(s)	129, 498, 705
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	3 cut(s)	253, 258, 556
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	71, 593
BstKTI	GATC	2 cut(s)	127, 388
BstMAI	GTCTC	5 cut(s)	161, 358, 492, 534, 606
BstMBI	GATC	2 cut(s)	124, 385
BstMWI	GCNNNNNNNGC	5 cut(s)	499, 597, 606, 715, 735
BstSLI	GKGCMC	2 cut(s)	334, 731
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	522
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	3 cut(s)	253, 258, 556
BtsIMutI	CAGTG	4 cut(s)	39, 275, 298, 481
BveI	ACCTGC	2 cut(s)	192, 703
Cac8I	GCNNGC	4 cut(s)	73, 222, 309, 607
CfoI	GCGC	2 cut(s)	71, 593
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	721
CspCI	CAANNNNNGTGG	4 cut(s)	382, 417, 457, 492
CviAII	CATG	3 cut(s)	171, 300, 671
CviJI	RGCY	7 cut(s)	75, 86, 220, 605, 626, 704, 752
CviKI_1	RGCY	7 cut(s)	75, 86, 220, 605, 626, 704, 752
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	3 cut(s)	129, 498, 705
DpnI	GATC	2 cut(s)	126, 387
DpnII	GATC	2 cut(s)	124, 385
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	356, 540
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	2 cut(s)	356, 540
Eco130I	CCWWGG	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	492
Eco57I	CTGAAG	2 cut(s)	31, 40
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	3 cut(s)	174, 303, 674
FaiI	YATR	9 cut(s)	11, 153, 172, 233, 301, 398, 621, 672, 711
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	3 cut(s)	170, 299, 670
FauI	CCCGC	2 cut(s)	551, 593
Fnu4HI	GCNGC	1 cut(s)	536
FokI	GGATG	3 cut(s)	260, 265, 563
Fsp4HI	GCNGC	1 cut(s)	536
FspBI	CTAG	2 cut(s)	243, 753
GlaI	GCGC	2 cut(s)	70, 592
GluI	GCNGC	1 cut(s)	536
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	2 cut(s)	71, 593
Hin1II	CATG	3 cut(s)	174, 303, 674
Hin6I	GCGC	2 cut(s)	69, 591
HinP1I	GCGC	2 cut(s)	69, 591
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	296
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	3 cut(s)	181, 289, 332
Hpy188I	TCNGA	4 cut(s)	59, 105, 375, 499
Hpy188III	TCNNGA	4 cut(s)	128, 206, 215, 637
Hpy8I	GTNNAC	3 cut(s)	181, 289, 332
HpyAV	CCTTC	2 cut(s)	127, 256
HpyCH4III	ACNGT	4 cut(s)	34, 120, 293, 458
HpyCH4IV	ACGT	2 cut(s)	99, 334
HpyCH4V	TGCA	6 cut(s)	256, 284, 317, 332, 698, 738
HpyF10VI	GCNNNNNNNGC	5 cut(s)	499, 597, 606, 715, 735
HpyF3I	CTNAG	3 cut(s)	129, 498, 705
HpySE526I	ACGT	2 cut(s)	99, 334
Hsp92II	CATG	3 cut(s)	174, 303, 674
HspAI	GCGC	2 cut(s)	69, 591
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	124, 385
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	243, 753
MaeII	ACGT	2 cut(s)	99, 334
MaeIII	GTNAC	2 cut(s)	273, 409
MalI	GATC	2 cut(s)	126, 387
MboI	GATC	2 cut(s)	124, 385
MboII	GAAGA	8 cut(s)	37, 373, 557, 575, 578, 581, 584, 587
MhlI	GDGCHC	3 cut(s)	334, 504, 731
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	3 cut(s)	81, 180, 760
MspA1I	CMGCKG	1 cut(s)	535
MspI	CCGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	317
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	5 cut(s)	499, 597, 606, 715, 735
NaeI	GCCGGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	670
NdeII	GATC	2 cut(s)	124, 385
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	3 cut(s)	174, 303, 674
NlaIV	GGNNCC	2 cut(s)	201, 668
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	273, 409
PaqCI	CACCTGC	1 cut(s)	703
PctI	GAATGC	1 cut(s)	317
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	201, 668
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
SaqAI	TTAA	3 cut(s)	81, 180, 760
SatI	GCNGC	1 cut(s)	536
Sau3AI	GATC	2 cut(s)	124, 385
Sau96I	GGNCC	1 cut(s)	85
SduI	GDGCHC	3 cut(s)	334, 504, 731
SetI	ASST	7 cut(s)	28, 102, 186, 201, 232, 337, 697
SfaNI	GCATC	1 cut(s)	243
SsiI	CCGC	5 cut(s)	14, 533, 558, 600, 609
SspMI	CTAG	2 cut(s)	243, 753
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	4 cut(s)	34, 120, 293, 458
TaiI	ACGT	2 cut(s)	102, 337
TaqI	TCGA	1 cut(s)	28
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	81, 180, 760
Tru9I	TTAA	3 cut(s)	81, 180, 760
TscAI	CASTG	4 cut(s)	39, 282, 298, 481
TseFI	GTSAC	2 cut(s)	273, 409
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	2 cut(s)	273, 409
TspDTI	ATGAA	4 cut(s)	288, 369, 567, 597
TspRI	CASTG	4 cut(s)	39, 282, 298, 481
VneI	GTGCAC	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	2 cut(s)	243, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.