Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005971

Physical Location & Seq

Genomic Coordinates Reverse (-)

54482422 .. 54487377

Gene Structure 4956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1444600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAGGGCATACCGCACCCAATACCTCGAACAGTGGAGGAAGTCTTCAGCGACTTCAGAGGCAGACGCGCCGGCTTGATTAAGGCCCTCACCAATGACGTTCAGAAATTTTATCAACTGTGCGATCCTGAGAAGGAGAACTTGTGTTTGTATGGACTACCAAATGAGACATGGGAAGTTAACCTGCCTGTTGAGGAGGTTCCTCCTGAACTGCCCGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAGGACTGGTTGTCACTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCACGCTTTGGGTTTGGTAAGAATGAAAGGAAGAGGCTTTTTCAGATGATAAATGATCTCCCCACCATATTTGAAGTTGTGACAGGAAACGCTAAGCAACCAAAAGACCAGTCTACTCCTCCCAACAACAGTAGCAAGAACAAATCCAGTGGAAAGGTGTCTCGGCAGTCTGAGCCCCTGCAGAGCAAAGGAGTGAAAATGTCGCCGCTGCCCAAAGAGGAGGATGAAAGCGGGGAAGAAGAAGAAGAAGATGATGAACAAGGAGCGACTTGCGGGGCATGTGGAGACAATTATGGGGCTGATGAGTTCTGGATTTGCTGTGATGTGTGCGAAAGATGGTTCCATGGAAAATGTGTAAAGATTACACCCGCAAAGGCTGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAGCAAGAGGGCTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

255

Amino Acids

28.58

Weight (kDa)

5.15

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 138	3.7e-69	Alfin
PHD	PF00628	201 - 247	2.4e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14510 AT2G02470 AT2G02470
fragaria_vesca	FvH4_5g27363 FvH4_5g27363
malus_domestica	MD08G1249900.v1.1 MD15G1444600.v1.1
prunus_persica	Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1
pyrus_communis	pycom08g21630 pycom15g39160
rosa_chinensis	RchiOBHm_Chr7g0218621
rosa_laevigata	RLG00000002330
rosa_multiflora	Rmu_sc0001301.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240730
rosa_rugosa	Rorug07G0179000 Rorug07G0179000
rosa_samantha	Rh7CG336900
rosa_wichuraiana	Rw7G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	443
AccII	CGCG	1 cut(s)	69
AciI	CCGC	5 cut(s)	14, 536, 561, 603, 699
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	2 cut(s)	31, 40
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	404
AhdI	GACNNNNNGTC	1 cut(s)	271
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	3 cut(s)	161, 495, 609
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	84
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	215
BaeGI	GKGCMC	2 cut(s)	334, 734
BanII	GRGCYC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	525
BccI	CCATC	2 cut(s)	242, 660
BcoDI	GTCTC	3 cut(s)	161, 495, 609
BfaI	CTAG	2 cut(s)	243, 756
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	2 cut(s)	536, 539
BlpI	GCTNAGC	2 cut(s)	423, 708
BlsI	GCNGC	2 cut(s)	537, 540
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	201, 671
BmsI	GCATC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	37
Bpu1102I	GCTNAGC	2 cut(s)	423, 708
BsaJI	CCNNGG	1 cut(s)	673
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	4 cut(s)	272, 282, 439, 477
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	3 cut(s)	253, 258, 559
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	3 cut(s)	120, 492, 699
BseNI	ACTGG	4 cut(s)	272, 282, 439, 477
BseRI	GAGGAG	3 cut(s)	209, 438, 563
BseSI	GKGCMC	2 cut(s)	334, 734
BseXI	GCAGC	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	3 cut(s)	161, 495, 609
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	334, 507, 734
Bsp143I	GATC	2 cut(s)	124, 385
Bsp1720I	GCTNAGC	2 cut(s)	423, 708
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	5 cut(s)	14, 536, 561, 603, 699
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	3 cut(s)	121, 493, 700
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	201, 671
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	4 cut(s)	272, 282, 439, 477
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	2 cut(s)	124, 385
BssT1I	CCWWGG	1 cut(s)	673
Bst4CI	ACNGT	4 cut(s)	34, 120, 293, 461
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	73, 222, 309, 334
BstDEI	CTNAG	4 cut(s)	129, 423, 501, 708
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	3 cut(s)	253, 258, 559
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	127, 388
BstMAI	GTCTC	3 cut(s)	161, 495, 609
BstMBI	GATC	2 cut(s)	124, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 718, 738
BstNSI	RCATGY	1 cut(s)	612
BstSFI	CTRYAG	1 cut(s)	509
BstSLI	GKGCMC	2 cut(s)	334, 734
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	525
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	3 cut(s)	253, 258, 559
BtsIMutI	CAGTG	4 cut(s)	39, 275, 298, 484
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	4 cut(s)	73, 222, 309, 334
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	724
CspCI	CAANNNNNGTGG	4 cut(s)	382, 417, 460, 495
CviAII	CATG	4 cut(s)	171, 300, 609, 674
CviJI	RGCY	8 cut(s)	75, 86, 220, 367, 505, 629, 707, 755
CviKI_1	RGCY	8 cut(s)	75, 86, 220, 367, 505, 629, 707, 755
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	4 cut(s)	129, 423, 501, 708
DpnI	GATC	2 cut(s)	126, 387
DpnII	GATC	2 cut(s)	124, 385
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	356
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	507
Eco57I	CTGAAG	2 cut(s)	31, 40
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	4 cut(s)	174, 303, 612, 677
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	4 cut(s)	170, 299, 608, 673
FauI	CCCGC	3 cut(s)	554, 596, 706
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	2 cut(s)	536, 539
FokI	GGATG	3 cut(s)	260, 265, 566
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	2 cut(s)	536, 539
FspBI	CTAG	2 cut(s)	243, 756
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	2 cut(s)	536, 539
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	174, 303, 612, 677
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	296
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	4 cut(s)	181, 289, 332, 444
Hpy188I	TCNGA	4 cut(s)	59, 105, 375, 502
Hpy188III	TCNNGA	3 cut(s)	128, 206, 640
Hpy8I	GTNNAC	4 cut(s)	181, 289, 332, 444
HpyAV	CCTTC	2 cut(s)	127, 256
HpyCH4III	ACNGT	4 cut(s)	34, 120, 293, 461
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	6 cut(s)	256, 284, 317, 332, 511, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 718, 738
HpyF3I	CTNAG	4 cut(s)	129, 423, 501, 708
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	174, 303, 612, 677
HspAI	GCGC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	124, 385
LmnI	GCTCC	1 cut(s)	593
Lsp1109I	GCAGC	1 cut(s)	525
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	243, 756
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	273, 409
MalI	GATC	2 cut(s)	126, 387
MboI	GATC	2 cut(s)	124, 385
MboII	GAAGA	7 cut(s)	37, 373, 578, 581, 584, 587, 590
MhlI	GDGCHC	3 cut(s)	334, 507, 734
MluCI	AATT	2 cut(s)	107, 619
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	3 cut(s)	81, 180, 763
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	317
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	502, 718, 738
NaeI	GCCGGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	2 cut(s)	124, 385
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	174, 303, 612, 677
NlaIV	GGNNCC	2 cut(s)	201, 671
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	2 cut(s)	273, 409
NspI	RCATGY	1 cut(s)	612
PctI	GAATGC	1 cut(s)	317
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	537, 540
PspN4I	GGNNCC	2 cut(s)	201, 671
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	513
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
SaqAI	TTAA	3 cut(s)	81, 180, 763
SatI	GCNGC	2 cut(s)	536, 539
Sau3AI	GATC	2 cut(s)	124, 385
Sau96I	GGNCC	1 cut(s)	85
SduI	GDGCHC	3 cut(s)	334, 507, 734
SetI	ASST	6 cut(s)	28, 102, 186, 201, 232, 489
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	509
Sse9I	AATT	2 cut(s)	107, 619
SsiI	CCGC	5 cut(s)	14, 536, 561, 603, 699
SspMI	CTAG	2 cut(s)	243, 756
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	4 cut(s)	34, 120, 293, 461
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	107, 619
TatI	WGTACW	1 cut(s)	723
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	81, 180, 763
Tru9I	TTAA	3 cut(s)	81, 180, 763
TscAI	CASTG	4 cut(s)	39, 282, 298, 484
TseFI	GTSAC	2 cut(s)	273, 409
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	2 cut(s)	273, 409
TspDTI	ATGAA	4 cut(s)	288, 369, 570, 600
TspRI	CASTG	4 cut(s)	39, 282, 298, 484
VneI	GTGCAC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	443
XspI	CTAG	2 cut(s)	243, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.