Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005971

Physical Location & Seq

Genomic Coordinates Reverse (-)

47642762 .. 47648788

Gene Structure 6027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G587000.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGGGCAATCCGCACCCAGTACCTCGAACAGTGGAGGAAGTCTTCAGCGACTTCAGAGGCAGACGCGCCGGCTTGATTAAGGCCCTCACCAGTGACGTTCAGAAGTTTTATCAAGAGTGCGATCCTGAGAAGGAGAATCTGTGTCTGTATGGACTGCCAAATGAGGCATGGGAAGTTAACCTGCCTGTTGAGGAGGTGCCTCCTGAGCTTCCCGAGCCAGCATTAGGCATAAACTTTGCTAGGGATGGGATGCAGGAGAAGGACTGGCTATCGCTGGTTGCAGTTCATAGCGATTCATGGTTGCTTGCAGTTGCATTTTACTTTGGTGCACGATTTGGGTTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAACGATCTCCCCACCATATTTGAAGTTGTGACAGGAAATGCTAAGCAACCAAAAGACCAGTCTGCTCCTCACAACAACAGTAGCAAGAACAAATCTAGTGGAAAGGTGCAGTCTCGGCAGTCTGAGCTCCCCCAAAGCAAAGGAGTAAAGATGTCTCCGCTGCCCAAAGAAGAGGAGGAAAGCGGAGAAGAAGAAGAAGAAGATGATGAACAAGGTGCGACTTGCGGGGCATGTGGAGACAACTATGGTGCTGATGAGTTCTGGATTTGCTGTGATGTGTGTGAGAGATGGTTCCATGGAAAATGTGTAAAGATTACACCCGCAAAGGCTGAGCATATCAAGCAGTACAAGTGCCCAGGTTGCAGTAGCAAAAGGGCTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

256

Amino Acids

28.64

Weight (kDa)

5.16

Isoelectric Point (pI)

69.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14510 AT2G02470 AT2G02470
fragaria_vesca	FvH4_5g27363 FvH4_5g27363
malus_domestica	MD08G1249900.v1.1 MD15G1444600.v1.1
prunus_persica	Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1
pyrus_communis	pycom08g21630 pycom15g39160
rosa_chinensis	RchiOBHm_Chr7g0218621
rosa_laevigata	RLG00000002330
rosa_multiflora	Rmu_sc0001301.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240730
rosa_rugosa	Rorug07G0179000 Rorug07G0179000
rosa_samantha	Rh7CG336900
rosa_wichuraiana	Rw7G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	199
AccII	CGCG	1 cut(s)	69
AciI	CCGC	5 cut(s)	14, 539, 564, 606, 702
AclWI	GGATC	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	31, 40
AfaI	GTAC	2 cut(s)	24, 728
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	736
AluBI	AGCT	2 cut(s)	211, 508
AluI	AGCT	2 cut(s)	211, 508
Alw21I	GWGCWC	2 cut(s)	334, 510
Alw26I	GTCTC	3 cut(s)	498, 540, 612
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	84
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	541
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	215
BaeGI	GKGCMC	2 cut(s)	334, 737
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	334, 510
BbvI	GCAGC	1 cut(s)	528
BccI	CCATC	2 cut(s)	242, 663
BciT130I	CCWGG	1 cut(s)	738
BcoDI	GTCTC	3 cut(s)	498, 540, 612
BfaI	CTAG	3 cut(s)	243, 477, 759
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	1 cut(s)	542
BlpI	GCTNAGC	2 cut(s)	423, 711
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	1 cut(s)	738
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	201, 674
BmrFI	CCNGG	1 cut(s)	738
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	2 cut(s)	423, 711
BsaJI	CCNNGG	2 cut(s)	676, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	4 cut(s)	20, 93, 272, 439
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	676, 736
BseGI	GGATG	2 cut(s)	253, 258
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	4 cut(s)	120, 198, 495, 702
BseNI	ACTGG	4 cut(s)	20, 93, 272, 439
BseRI	GAGGAG	3 cut(s)	209, 438, 569
BseSI	GKGCMC	2 cut(s)	334, 737
BseXI	GCAGC	1 cut(s)	528
BsgI	GTGCAG	1 cut(s)	509
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	334, 510
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	3 cut(s)	498, 540, 612
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	334, 510, 737
Bsp143I	GATC	2 cut(s)	124, 385
Bsp1720I	GCTNAGC	2 cut(s)	423, 711
Bsp19I	CCATGG	1 cut(s)	676
BspACI	CCGC	5 cut(s)	14, 539, 564, 606, 702
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	4 cut(s)	121, 199, 496, 703
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	201, 674
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	4 cut(s)	20, 93, 272, 439
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	676, 736
BssMI	GATC	2 cut(s)	124, 385
BssT1I	CCWWGG	1 cut(s)	676
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	2 cut(s)	34, 461
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	73, 222, 309
BstDEI	CTNAG	5 cut(s)	129, 207, 423, 504, 711
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	2 cut(s)	253, 258
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	127, 388
BstMAI	GTCTC	3 cut(s)	498, 540, 612
BstMBI	GATC	2 cut(s)	124, 385
BstMWI	GCNNNNNNNGC	6 cut(s)	208, 217, 496, 505, 721, 741
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	736
BstSLI	GKGCMC	2 cut(s)	334, 737
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	528
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	253, 258
BtsIMutI	CAGTG	2 cut(s)	39, 100
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	73, 222, 309
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	23, 727
CspCI	CAANNNNNGTGG	4 cut(s)	382, 417, 460, 495
CviAII	CATG	4 cut(s)	171, 300, 612, 677
CviJI	RGCY	9 cut(s)	75, 86, 211, 220, 271, 367, 508, 710, 758
CviKI_1	RGCY	9 cut(s)	75, 86, 211, 220, 271, 367, 508, 710, 758
CviQI	GTAC	2 cut(s)	23, 727
DdeI	CTNAG	5 cut(s)	129, 207, 423, 504, 711
DpnI	GATC	2 cut(s)	126, 387
DpnII	GATC	2 cut(s)	124, 385
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	2 cut(s)	31, 40
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	508
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	4 cut(s)	174, 303, 615, 680
FatI	CATG	4 cut(s)	170, 299, 611, 676
FauI	CCCGC	2 cut(s)	599, 709
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	2 cut(s)	260, 265
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	3 cut(s)	243, 477, 759
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	174, 303, 615, 680
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	139, 296
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	181, 332
Hpy188I	TCNGA	4 cut(s)	59, 105, 375, 505
Hpy188III	TCNNGA	5 cut(s)	116, 128, 206, 215, 643
Hpy8I	GTNNAC	2 cut(s)	181, 332
HpyAV	CCTTC	2 cut(s)	127, 256
HpyCH4III	ACNGT	2 cut(s)	34, 461
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	7 cut(s)	256, 284, 311, 317, 332, 490, 744
HpyF10VI	GCNNNNNNNGC	6 cut(s)	208, 217, 496, 505, 721, 741
HpyF3I	CTNAG	5 cut(s)	129, 207, 423, 504, 711
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	174, 303, 615, 680
HspAI	GCGC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	124, 385
LmnI	GCTCC	2 cut(s)	451, 513
Lsp1109I	GCAGC	1 cut(s)	528
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	3 cut(s)	243, 477, 759
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	95, 409
MalI	GATC	2 cut(s)	126, 387
MboI	GATC	2 cut(s)	124, 385
MboII	GAAGA	7 cut(s)	37, 563, 581, 584, 587, 590, 593
MhlI	GDGCHC	3 cut(s)	334, 510, 737
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	3 cut(s)	81, 180, 766
MspA1I	CMGCKG	1 cut(s)	541
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	738
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	6 cut(s)	208, 217, 496, 505, 721, 741
NaeI	GCCGGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	676
NdeII	GATC	2 cut(s)	124, 385
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	174, 303, 615, 680
NlaIV	GGNNCC	2 cut(s)	201, 674
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	95, 409
NspI	RCATGY	1 cut(s)	615
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	139, 296
PkrI	GCNGC	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	2 cut(s)	201, 674
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	2 cut(s)	24, 728
RsaNI	GTAC	2 cut(s)	23, 727
SacI	GAGCTC	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	81, 180, 766
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	2 cut(s)	124, 385
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	3 cut(s)	334, 510, 737
SetI	ASST	9 cut(s)	28, 102, 186, 201, 213, 489, 510, 598, 742
SfaNI	GCATC	1 cut(s)	243
SsiI	CCGC	5 cut(s)	14, 539, 564, 606, 702
SspMI	CTAG	3 cut(s)	243, 477, 759
SstI	GAGCTC	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	736
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	34, 461
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	28
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	2 cut(s)	139, 296
Tru1I	TTAA	3 cut(s)	81, 180, 766
Tru9I	TTAA	3 cut(s)	81, 180, 766
TscAI	CASTG	2 cut(s)	39, 100
TseFI	GTSAC	2 cut(s)	95, 409
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	2 cut(s)	95, 409
TspDTI	ATGAA	4 cut(s)	278, 288, 369, 603
TspRI	CASTG	2 cut(s)	39, 100
VneI	GTGCAC	1 cut(s)	330
XceI	RCATGY	1 cut(s)	615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	3 cut(s)	243, 477, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.