Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005971

Physical Location & Seq

Genomic Coordinates Forward (+)

652564 .. 654985

Gene Structure 2422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGGGAATTACTCATCCAATACCTCGTACTGTTGAAGAGGTCTTTAGCGACTTCAGAGGTCGACGAGCTGGTCTTATTAAAGCTCTCACTAATGATATGGTGAAGTTTTACCAAACGTGTGATCCTGAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAATGAGACATGGGAGGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCTTTAGGCATCAATTTCGCTAGAGACGGAATGCAAGAAAAGGACTGGGTATCTTTGGTCGCAGTTCACAGTGATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGTGAGCGGCAATGCAAAGCAGTCCAAGGATCTATCTGTTAACAACAATAATAGCAAAAGCAAACCTAGTGGCGTCAAGTCTCGCCAATCCGAATCTCTCTCAAAGGTTGCAAAGATGTCATCTCCACCGCCAAAAGAAGAAGAAGAAGAAGAAGATGAGAGTGAAGATGAGAGTGAAGACGATGAACAAGGTGCGGTTTGTGGTGCTTGTGGAGACAACTACGGTACAGATGAGTTCTGGATTTGCTGCGACGCGTGTGAGAAATGGTTCCATGGAAAATGTGTGAAGATAACACCTGCAAAAGCAGAACACATCAAGCATTACAAATGCCCAACTTGCAGTAACAAGAGAGCTAGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009653 GO:0009888 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0016036 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0035064 GO:0040007 GO:0042393 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0050896 GO:0051716 GO:0055065 GO:0055080 GO:0060560 GO:0065007 GO:0065008 GO:0071496 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098771 GO:0099402 GO:0140030 GO:0140034 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

256

Amino Acids

28.85

Weight (kDa)

5.04

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 138	7.2e-68	Alfin
PHD	PF00628	203 - 249	7.8e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14510 AT2G02470 AT2G02470
fragaria_vesca	FvH4_5g27363 FvH4_5g27363
malus_domestica	MD08G1249900.v1.1 MD15G1444600.v1.1
prunus_persica	Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1
pyrus_communis	pycom08g21630 pycom15g39160
rosa_chinensis	RchiOBHm_Chr7g0218621
rosa_laevigata	RLG00000002330
rosa_multiflora	Rmu_sc0001301.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240730
rosa_rugosa	Rorug07G0179000 Rorug07G0179000
rosa_samantha	Rh7CG336900
rosa_wichuraiana	Rw7G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	712
AasI	GACNNNNNNGTC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	712
AccBSI	CCGCTC	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	64
AccII	CGCG	1 cut(s)	662
AciI	CCGC	3 cut(s)	414, 536, 602
AclWI	GGATC	2 cut(s)	119, 444
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	2 cut(s)	31, 634
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	2 cut(s)	119, 660
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	6 cut(s)	71, 86, 211, 224, 388, 761
AluI	AGCT	6 cut(s)	71, 86, 211, 224, 388, 761
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	5 cut(s)	152, 161, 240, 492, 615
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	2 cut(s)	119, 444
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	304, 388, 654
ApoI	RAATTY	1 cut(s)	139
AseI	ATTAAT	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	674
AsuHPI	GGTGA	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	402
BaeGI	GKGCMC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	3 cut(s)	291, 375, 641
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BcoDI	GTCTC	5 cut(s)	152, 161, 240, 492, 615
BfaI	CTAG	3 cut(s)	243, 474, 762
BfuAI	ACCTGC	1 cut(s)	712
BisI	GCNGC	4 cut(s)	305, 389, 415, 655
BlsI	GCNGC	4 cut(s)	306, 390, 416, 656
BmiI	GGNNCC	1 cut(s)	677
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	432, 679
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	432, 679
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	120, 198
BseNI	ACTGG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	291, 375, 641
Bsh1236I	CGCG	1 cut(s)	662
BsiHKAI	GWGCWC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	5 cut(s)	152, 161, 240, 492, 615
BsmBI	CGTCTC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	124, 436
Bsp19I	CCATGG	1 cut(s)	679
BspACI	CCGC	3 cut(s)	414, 536, 602
BspCNI	CTCAG	2 cut(s)	121, 199
BspFNI	CGCG	1 cut(s)	662
BspLI	GGNNCC	1 cut(s)	677
BspMI	ACCTGC	1 cut(s)	712
BspPI	GGATC	2 cut(s)	119, 444
BspT104I	TTCGAA	1 cut(s)	402
BsrBI	CCGCTC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	432, 679
BssMI	GATC	2 cut(s)	124, 436
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	432, 679
Bst4CI	ACNGT	3 cut(s)	34, 293, 632
Bst6I	CTCTTC	2 cut(s)	33, 356
BstACI	GRCGYC	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	129, 207
BstDSI	CCRYGG	1 cut(s)	679
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	662
BstKTI	GATC	2 cut(s)	127, 439
BstMAI	GTCTC	5 cut(s)	152, 161, 240, 492, 615
BstMBI	GATC	2 cut(s)	124, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	3 cut(s)	291, 375, 641
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BtgI	CCRYGG	1 cut(s)	679
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	712
CseI	GACGC	2 cut(s)	469, 668
Csp6I	GTAC	2 cut(s)	30, 633
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	3 cut(s)	171, 300, 680
CviJI	RGCY	8 cut(s)	71, 86, 211, 224, 304, 367, 388, 761
CviKI_1	RGCY	8 cut(s)	71, 86, 211, 224, 304, 367, 388, 761
CviQI	GTAC	2 cut(s)	30, 633
DdeI	CTNAG	2 cut(s)	129, 207
DpnI	GATC	2 cut(s)	126, 438
DpnII	GATC	2 cut(s)	124, 436
DrdI	GACNNNNNNGTC	1 cut(s)	72
DseDI	GACNNNNNNGTC	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	33, 356
EarI	CTCTTC	2 cut(s)	33, 356
Eco130I	CCWWGG	2 cut(s)	432, 679
Eco57I	CTGAAG	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	432, 679
ErhI	CCWWGG	2 cut(s)	432, 679
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	3 cut(s)	174, 303, 683
FaiI	YATR	5 cut(s)	101, 153, 172, 301, 681
FatI	CATG	3 cut(s)	170, 299, 679
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	305, 389, 415, 655
FokI	GGATG	1 cut(s)	3
Fsp4HI	GCNGC	4 cut(s)	305, 389, 415, 655
FspBI	CTAG	3 cut(s)	243, 474, 762
GluI	GCNGC	4 cut(s)	305, 389, 415, 655
HgaI	GACGC	2 cut(s)	469, 668
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	174, 303, 683
HincII	GTYRAC	2 cut(s)	65, 448
HindII	GTYRAC	2 cut(s)	65, 448
HinfI	GANTC	2 cut(s)	296, 500
HpaI	GTTAAC	1 cut(s)	448
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	4 cut(s)	65, 289, 332, 448
Hpy188I	TCNGA	3 cut(s)	59, 341, 499
Hpy188III	TCNNGA	5 cut(s)	128, 206, 215, 373, 646
Hpy8I	GTNNAC	4 cut(s)	65, 289, 332, 448
Hpy99I	CGWCG	2 cut(s)	69, 662
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	3 cut(s)	34, 293, 632
HpyCH4IV	ACGT	2 cut(s)	119, 334
HpyCH4V	TGCA	7 cut(s)	256, 317, 332, 422, 518, 707, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	744
HpyF3I	CTNAG	2 cut(s)	129, 207
HpySE526I	ACGT	2 cut(s)	119, 334
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	174, 303, 683
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	124, 436
LpnPI	CCDG	9 cut(s)	57, 141, 219, 228, 234, 253, 386, 631, 717
Lsp1109I	GCAGC	3 cut(s)	291, 375, 641
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	3 cut(s)	243, 474, 762
MaeII	ACGT	2 cut(s)	119, 334
MaeIII	GTNAC	1 cut(s)	749
MalI	GATC	2 cut(s)	126, 438
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	2 cut(s)	124, 436
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	3 cut(s)	9, 139, 235
MluI	ACGCGT	1 cut(s)	660
MnlI	CCTC	8 cut(s)	34, 36, 53, 169, 187, 213, 351, 357
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	4 cut(s)	81, 180, 381, 447
Mva1269I	GAATGC	1 cut(s)	258
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	1 cut(s)	744
NcoI	CCATGG	1 cut(s)	679
NdeII	GATC	2 cut(s)	124, 436
NlaIII	CATG	3 cut(s)	174, 303, 683
NlaIV	GGNNCC	1 cut(s)	677
NspV	TTCGAA	1 cut(s)	402
PaqCI	CACCTGC	1 cut(s)	712
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	2 cut(s)	296, 500
PkrI	GCNGC	4 cut(s)	306, 390, 416, 656
PshBI	ATTAAT	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	2 cut(s)	31, 634
RsaNI	GTAC	2 cut(s)	30, 633
SalI	GTCGAC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	81, 180, 381, 447
SatI	GCNGC	4 cut(s)	305, 389, 415, 655
Sau3AI	GATC	2 cut(s)	124, 436
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	1 cut(s)	240
SfuI	TTCGAA	1 cut(s)	402
Sse9I	AATT	3 cut(s)	9, 139, 235
SsiI	CCGC	3 cut(s)	414, 536, 602
SspMI	CTAG	3 cut(s)	243, 474, 762
StyI	CCWWGG	2 cut(s)	432, 679
TaaI	ACNGT	3 cut(s)	34, 293, 632
TaiI	ACGT	2 cut(s)	122, 337
TaqI	TCGA	2 cut(s)	64, 402
TasI	AATT	3 cut(s)	9, 139, 235
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	2 cut(s)	296, 500
Tru1I	TTAA	4 cut(s)	81, 180, 381, 447
Tru9I	TTAA	4 cut(s)	81, 180, 381, 447
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	3 cut(s)	304, 388, 654
TspDTI	ATGAA	2 cut(s)	288, 606
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	330
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	3 cut(s)	243, 474, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.