Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005971

Physical Location & Seq

Genomic Coordinates Forward (+)

32251200 .. 32255831

Gene Structure 4632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAGGGCATACCGCACCCAGTACCTCGAACAGTGGAGGAAGTCTTCAGCGACTTCAGAGGCCGACGCGCCGGTTTGATTAAGGCCCTCACCACCGACGTTCAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAATTTGTGTTTATATGGACTGCCAAATGAGGCATGGGAAGTTAACCTTCCAGTTGAGGAGGTGCCTCCTGAGCTTCCCGAACCAGCATTAGGTATAAACTTTGCTAGAGATGGGATGGCGGAGAAGGACTGGTTGTCCCTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCACGCTTTGGGTTTGGCAAAAATGAAAGGCAGCCTACGAACCAATCTGGTATTCATCACAACAATAGCAAGAGCAAATCAAGTGGCAAGCCGTCTCGGCAACCTGAAATCAACCCAAGTAAAGGGGTAAAGATGTCTCCACTAGCCAAAGAAGACGAGGAAAGCGGGGAAGAAGAAGAAGAAGATGATGAACAAGGTGCTACTTGCGGGGCATGTGGAGACAACTATGGCGCTGACGAGTTCTGGATTTGCTGTGATGTGTGTGAGAGATGGTTTCATGGGAAATGTGTGAAGATTACACCTGCAAAGGCTGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAGCAAGAGGGCTAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

233

Amino Acids

25.94

Weight (kDa)

5.19

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 121	3.8e-59	Alfin
PHD	PF00628	179 - 225	2e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14510 AT2G02470 AT2G02470
fragaria_vesca	FvH4_5g27363 FvH4_5g27363
malus_domestica	MD08G1249900.v1.1 MD15G1444600.v1.1
prunus_persica	Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1
pyrus_communis	pycom08g21630 pycom15g39160
rosa_chinensis	RchiOBHm_Chr7g0218621
rosa_laevigata	RLG00000002330
rosa_multiflora	Rmu_sc0001301.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240730
rosa_rugosa	Rorug07G0179000 Rorug07G0179000
rosa_samantha	Rh7CG336900
rosa_wichuraiana	Rw7G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	640
Acc36I	ACCTGC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	199
AccII	CGCG	1 cut(s)	69
AciI	CCGC	4 cut(s)	14, 257, 495, 537
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	31, 40
AfaI	GTAC	2 cut(s)	24, 659
AfiI	CCNNNNNNNGG	2 cut(s)	227, 452
AhdI	GACNNNNNGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	3 cut(s)	429, 471, 543
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	2 cut(s)	61, 84
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	2 cut(s)	71, 563
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	82
BaeGI	GKGCMC	2 cut(s)	334, 668
BanI	GGYRCC	1 cut(s)	199
BbsI	GAAGAC	2 cut(s)	37, 489
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	3 cut(s)	242, 247, 594
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	3 cut(s)	429, 471, 543
BfaI	CTAG	3 cut(s)	243, 473, 690
BfoI	RGCGCY	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	640
BglI	GCCNNNNNGGC	1 cut(s)	427
BisI	GCNGC	1 cut(s)	362
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	37, 489
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	276
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 452
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	20, 188, 272
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	227, 452
BseMII	CTCAG	3 cut(s)	120, 198, 633
BseNI	ACTGG	3 cut(s)	20, 188, 272
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	2 cut(s)	334, 668
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	63, 86
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	227, 452
BsmAI	GTCTC	3 cut(s)	429, 471, 543
BsmBI	CGTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	63, 86
Bsp1286I	GDGCHC	2 cut(s)	334, 668
Bsp143I	GATC	1 cut(s)	124
Bsp1720I	GCTNAGC	1 cut(s)	642
BspACI	CCGC	4 cut(s)	14, 257, 495, 537
BspANI	GGCC	2 cut(s)	63, 86
BspCNI	CTCAG	3 cut(s)	121, 199, 634
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	3 cut(s)	20, 188, 272
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	34, 293
BstC8I	GCNNGC	3 cut(s)	309, 334, 419
BstDEI	CTNAG	3 cut(s)	129, 207, 642
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	2 cut(s)	71, 563
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	3 cut(s)	429, 471, 543
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 427, 652, 672
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	276
BstSLI	GKGCMC	2 cut(s)	334, 668
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	2 cut(s)	37, 489
BsuRI	GGCC	2 cut(s)	63, 86
BtsCI	GGATG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	39, 125, 298
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	3 cut(s)	309, 334, 419
CfoI	GCGC	2 cut(s)	71, 563
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	23, 658
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	4 cut(s)	171, 300, 543, 608
CviJI	RGCY	8 cut(s)	63, 86, 211, 364, 421, 476, 641, 689
CviKI_1	RGCY	8 cut(s)	63, 86, 211, 364, 421, 476, 641, 689
CviQI	GTAC	2 cut(s)	23, 658
DdeI	CTNAG	3 cut(s)	129, 207, 642
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	31, 40
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	4 cut(s)	174, 303, 546, 611
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	4 cut(s)	170, 299, 542, 607
FauI	CCCGC	2 cut(s)	488, 530
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	3 cut(s)	243, 473, 690
GlaI	GCGC	2 cut(s)	70, 562
GluI	GCNGC	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	63, 86
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	2 cut(s)	71, 563
Hin1II	CATG	4 cut(s)	174, 303, 546, 611
Hin6I	GCGC	2 cut(s)	69, 561
HinP1I	GCGC	2 cut(s)	69, 561
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	296
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	3 cut(s)	181, 289, 332
Hpy188I	TCNGA	2 cut(s)	59, 105
Hpy188III	TCNNGA	4 cut(s)	128, 206, 215, 574
Hpy8I	GTNNAC	3 cut(s)	181, 289, 332
Hpy99I	CGWCG	2 cut(s)	69, 101
HpyAV	CCTTC	3 cut(s)	127, 194, 256
HpyCH4III	ACNGT	2 cut(s)	34, 293
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	284, 317, 332, 635, 675
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 427, 652, 672
HpyF3I	CTNAG	3 cut(s)	129, 207, 642
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	174, 303, 546, 611
HspAI	GCGC	2 cut(s)	69, 561
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	373
MaeI	CTAG	3 cut(s)	243, 473, 690
MaeII	ACGT	1 cut(s)	99
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	8 cut(s)	37, 494, 512, 515, 518, 521, 524, 634
MhlI	GDGCHC	2 cut(s)	334, 668
MluCI	AATT	1 cut(s)	139
MseI	TTAA	2 cut(s)	81, 180
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	4 cut(s)	208, 427, 652, 672
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	4 cut(s)	174, 303, 546, 611
NlaIV	GGNNCC	1 cut(s)	201
NmeAIII	GCCGAG	1 cut(s)	406
NspI	RCATGY	1 cut(s)	546
PaqCI	CACCTGC	1 cut(s)	640
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	2 cut(s)	24, 659
RsaNI	GTAC	2 cut(s)	23, 658
SaqAI	TTAA	2 cut(s)	81, 180
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	334, 668
SetI	ASST	9 cut(s)	28, 102, 186, 201, 213, 232, 436, 529, 634
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	4 cut(s)	14, 257, 495, 537
SspMI	CTAG	3 cut(s)	243, 473, 690
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	34, 293
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	139
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	81, 180
Tru9I	TTAA	2 cut(s)	81, 180
TscAI	CASTG	3 cut(s)	39, 125, 298
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	5 cut(s)	288, 369, 374, 534, 596
TspRI	CASTG	3 cut(s)	39, 125, 298
VneI	GTGCAC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	3 cut(s)	243, 473, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.