Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005971

Physical Location & Seq

Genomic Coordinates Forward (+)

18629091 .. 18635415

Gene Structure 6325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27363.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGGGTTTACCGCAGCACCCGGCACCACGAACTGTGGAGGAAGTCTTCAGCGACTTCAGAGGCCGTCGCGCCGGCTTGATTAAGGCCCTCACCACCGACGTTCAGAAGTTTTACCAGCAGTGCGATCCTGATAAGGAGAATCTGTGTTTATATGGACTGCCAACTGAGGCATGGGAAGTTAATCTTCCTGTTGAGGAGGTGCCTCCTGAGCTTCCTGAACCAGCGCTAGGTATAAACTTTGCTAGAGATGGCATGGCGGAGAAGGACTGGTTGTCGCTGGTTGCAGTTCACAGCGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCACGCTTTGGGTTTGGCAAAAATGACAGAAAGAAGCTGTTTCAGATGATAAATGATCTCCCCACCATATTTGAAGTTGTGACAGGCAGTGGGAGGCAACCTACGAACGAGTCTGCTCTTCATCACAACAGTAGCAAGAGCAAATCCAGTGGCAAGCCGTCTCGGCAACCTGAAATCAACCCGAGTAAAGGGGTAAAGATGTCGCCACCAGCCAAAGAAGACGAGGAAAGTGGGGAAGAAGAAGAAGAGGATGATGAACAAGGTGCTACTTGCGGGGCATGTGGAGACAACTACGGCGCTGATGAGTTCTGGATTTGCTGTGATGTTTGTGAGAGATGGTTTCATGGTAAATGTGTGAAGATTACACCTGCAAAGGCTGAGCATATCAAGCAGTACAAGTGCCCAAGCTGCAGTAGCAAGAGGGCTAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

256

Amino Acids

28.44

Weight (kDa)

5.21

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	12 - 139	4.2e-68	Alfin
PHD	PF00628	202 - 248	2.4e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14510 AT2G02470 AT2G02470
fragaria_vesca	FvH4_5g27363 FvH4_5g27363
malus_domestica	MD08G1249900.v1.1 MD15G1444600.v1.1
prunus_persica	Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1
pyrus_communis	pycom08g21630 pycom15g39160
rosa_chinensis	RchiOBHm_Chr7g0218621
rosa_laevigata	RLG00000002330
rosa_multiflora	Rmu_sc0001301.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240730
rosa_rugosa	Rorug07G0179000 Rorug07G0179000
rosa_samantha	Rh7CG336900
rosa_wichuraiana	Rw7G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	709
Acc36I	ACCTGC	1 cut(s)	709
AccB1I	GGYRCC	2 cut(s)	25, 202
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	14, 260, 606
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	2 cut(s)	34, 43
AfaI	GTAC	1 cut(s)	728
AfeI	AGCGCT	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	230, 521
AgsI	TTSAA	1 cut(s)	407
AhdI	GACNNNNNGTC	1 cut(s)	274
AluBI	AGCT	3 cut(s)	214, 370, 741
AluI	AGCT	3 cut(s)	214, 370, 741
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	498, 612
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	228
AoxI	GGCC	2 cut(s)	64, 87
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	16, 741
AspLEI	GCGC	3 cut(s)	74, 229, 632
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	514
BaeGI	GKGCMC	2 cut(s)	337, 737
BanI	GGYRCC	2 cut(s)	25, 202
BbsI	GAAGAC	2 cut(s)	40, 558
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	28, 728
BccI	CCATC	2 cut(s)	245, 663
BceAI	ACGGC	3 cut(s)	51, 475, 643
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	498, 612
BfaI	CTAG	3 cut(s)	230, 246, 759
BfmI	CTRYAG	1 cut(s)	742
BfoI	RGCGCY	2 cut(s)	230, 633
BfuAI	ACCTGC	1 cut(s)	709
BglI	GCCNNNNNGGC	1 cut(s)	496
BisI	GCNGC	2 cut(s)	17, 742
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	2 cut(s)	18, 743
Bme1390I	CCNGG	1 cut(s)	23
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	27, 204
BmrFI	CCNGG	1 cut(s)	23
BpiI	GAAGAC	2 cut(s)	40, 558
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 521
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	275, 480
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	230, 521
BseMII	CTCAG	3 cut(s)	159, 201, 702
BseNI	ACTGG	2 cut(s)	275, 480
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	2 cut(s)	337, 737
BseXI	GCAGC	2 cut(s)	28, 728
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	66, 89
BshNI	GGYRCC	2 cut(s)	25, 202
BsiHKAI	GWGCWC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	23, 75
BslI	CCNNNNNNNGG	2 cut(s)	230, 521
BsmAI	GTCTC	2 cut(s)	498, 612
BsmBI	CGTCTC	1 cut(s)	498
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	66, 89
BsoBI	CYCGRG	1 cut(s)	514
Bsp1286I	GDGCHC	2 cut(s)	337, 737
Bsp143I	GATC	2 cut(s)	127, 388
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	3 cut(s)	14, 260, 606
BspANI	GGCC	2 cut(s)	66, 89
BspCNI	CTCAG	3 cut(s)	160, 202, 703
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	27, 204
BspMAI	CTGCAG	1 cut(s)	746
BspMI	ACCTGC	1 cut(s)	709
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	456
BspT107I	GGYRCC	2 cut(s)	25, 202
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	275, 480
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	2 cut(s)	127, 388
Bst4CI	ACNGT	2 cut(s)	37, 464
Bst6I	CTCTTC	2 cut(s)	456, 573
BstC8I	GCNNGC	4 cut(s)	76, 312, 337, 488
BstDEI	CTNAG	3 cut(s)	168, 210, 711
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	72
BstH2I	RGCGCY	2 cut(s)	230, 633
BstHHI	GCGC	3 cut(s)	74, 229, 632
BstKTI	GATC	2 cut(s)	130, 391
BstMAI	GTCTC	2 cut(s)	498, 612
BstMBI	GATC	2 cut(s)	127, 388
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 496, 721, 741, 747
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	742
BstSLI	GKGCMC	2 cut(s)	337, 737
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	28, 728
BstV2I	GAAGAC	2 cut(s)	40, 558
BsuRI	GGCC	2 cut(s)	66, 89
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	2 cut(s)	128, 427
BtsIMutI	CAGTG	3 cut(s)	128, 427, 487
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	4 cut(s)	76, 312, 337, 488
CfoI	GCGC	3 cut(s)	74, 229, 632
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	727
CspCI	CAANNNNNGTGG	4 cut(s)	385, 420, 463, 498
CviAII	CATG	5 cut(s)	174, 256, 303, 612, 677
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	3 cut(s)	168, 210, 711
DpnI	GATC	2 cut(s)	129, 390
DpnII	GATC	2 cut(s)	127, 388
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	456, 573
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	2 cut(s)	456, 573
EciI	GGCGGA	1 cut(s)	275
Eco47III	AGCGCT	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	34, 43
Eco88I	CYCGRG	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	5 cut(s)	177, 259, 306, 615, 680
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	5 cut(s)	173, 255, 302, 611, 676
FauI	CCCGC	1 cut(s)	599
Fnu4HI	GCNGC	2 cut(s)	17, 742
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	2 cut(s)	17, 742
FspBI	CTAG	3 cut(s)	230, 246, 759
GlaI	GCGC	3 cut(s)	73, 228, 631
GluI	GCNGC	2 cut(s)	17, 742
HaeII	RGCGCY	2 cut(s)	230, 633
HaeIII	GGCC	2 cut(s)	66, 89
HapII	CCGG	2 cut(s)	23, 75
HhaI	GCGC	3 cut(s)	74, 229, 632
Hin1II	CATG	5 cut(s)	177, 259, 306, 615, 680
Hin6I	GCGC	3 cut(s)	72, 227, 630
HinP1I	GCGC	3 cut(s)	72, 227, 630
HinfI	GANTC	3 cut(s)	142, 299, 443
HpaII	CCGG	2 cut(s)	23, 75
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	3 cut(s)	11, 292, 335
Hpy188I	TCNGA	3 cut(s)	62, 108, 378
Hpy188III	TCNNGA	4 cut(s)	131, 209, 218, 643
Hpy8I	GTNNAC	3 cut(s)	11, 292, 335
Hpy99I	CGWCG	2 cut(s)	72, 104
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	37, 464
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	287, 320, 335, 704, 744
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 496, 721, 741, 747
HpyF3I	CTNAG	3 cut(s)	168, 210, 711
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	177, 259, 306, 615, 680
HspAI	GCGC	3 cut(s)	72, 227, 630
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	127, 388
LguI	GCTCTTC	1 cut(s)	456
Lsp1109I	GCAGC	2 cut(s)	28, 728
MaeI	CTAG	3 cut(s)	230, 246, 759
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	2 cut(s)	129, 390
MboI	GATC	2 cut(s)	127, 388
MboII	GAAGA	9 cut(s)	40, 179, 443, 563, 581, 584, 587, 590, 703
MhlI	GDGCHC	2 cut(s)	337, 737
MlyI	GAGTC	1 cut(s)	452
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	2 cut(s)	84, 183
MspI	CCGG	2 cut(s)	23, 75
MspR9I	CCNGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	320
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	5 cut(s)	211, 496, 721, 741, 747
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	2 cut(s)	127, 388
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	5 cut(s)	177, 259, 306, 615, 680
NlaIV	GGNNCC	2 cut(s)	27, 204
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	615
PaqCI	CACCTGC	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	456
PctI	GAATGC	1 cut(s)	320
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	142, 299
PkrI	GCNGC	2 cut(s)	18, 743
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	27, 204
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	746
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	84, 183
SatI	GCNGC	2 cut(s)	17, 742
Sau3AI	GATC	2 cut(s)	127, 388
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	337, 737
SfcI	CTRYAG	1 cut(s)	742
SsiI	CCGC	3 cut(s)	14, 260, 606
SspMI	CTAG	3 cut(s)	230, 246, 759
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	37, 464
TaiI	ACGT	1 cut(s)	105
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	2 cut(s)	142, 299
Tru1I	TTAA	2 cut(s)	84, 183
Tru9I	TTAA	2 cut(s)	84, 183
TscAI	CASTG	3 cut(s)	128, 427, 487
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	16, 741
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	4 cut(s)	291, 443, 603, 665
TspRI	CASTG	3 cut(s)	128, 427, 487
VneI	GTGCAC	1 cut(s)	333
XceI	RCATGY	1 cut(s)	615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XspI	CTAG	3 cut(s)	230, 246, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.