AT1G14710

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
5061694 .. 5065303
3610 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14710.1

Sequence Viewer

Length: 1806 bp
ATGGCAATGCCACCACCTGGAAATGTTACTACTCCGTCTGAGAAATTGCAGTTTCCTCCTCCGGCAAATTGGATCCCAGACGAGCGAGATGGGTTTATCTCCTGGCTTCGTGCGGAGTTCGCTGCGGCTAACGCGATCATCGATTCGCTTTGTCAGCATCTACAAGCGGTTGGGGATCACAACGAGTACGAATCCGTGATCGGAAGCATTCATCATCGTCGCTTAGCCTGGTCTCAAGTGCTTACTATGCAGCAGTTTTTCCCAGTTGCAGATGTTTCTTACAATCTTCAGCAGATTGCTTGGAAAAGGCAACAGCAAATGCCACCTCAAAGGCATTACAATTCTGATCAAGTTGGGAAATTTGGAGCAAGGAGATCAGGGCCTGGGTTTAACAAGCATCATGGTGGTGGTGGGGGTTACAGAGGAGCTGATTCGATGGCGAGAAATGGGCATAATTTCAATGGCGTTAACAGTGATCGTGTTGAGCATCGGGAGGAAGCTAAGTTGGCAAGTGATGTTAAGGCATTGTCTGTTGCAGAAGAGAAGAGAGATGGTAGCGAGAAACCGAGGAGTGATAGTAAAGTTGAGAAAAAATTGGAAGAATCTGAAACTCAAGAGGAGATAGTGAAGAACCATAAGTGTAACTCGGGTTCTAAAGATAACAGTCTCATTTCTGAGCAAAAGCAGGAGGAGAACGATAAAGAGTGTCCTGCAAGCATGGCAAAGACTTTTGTGGTTCAAGAGATGTATGATGCAAAAATGGTTAATGTTGTCGAAGGATTGAAGCTATACGACAAAATGCTTGACGCAAACGAAGTTTCTCAACTCGTTTCTCTTGTAACCAATCTGAGACTTGCTGGAAGAAGAGGTCAACTTCAAAGTGAGGCATATGTGGGTTATAAACGGCCAAATAGAGGACATGGACGTGAGATGATCCAACTCGGTCTTCCTATAGCTGATACGCCGCCTGATGATGATAGTATCAAAGATCGAAGAATAGAGCCAATCCCATCAGCTCTTTCAGACATCATTGAACGTTTGGTCTCAAAGCAAATCATACCTGTGAAACCAGACGCATGCATCATTGATTTCTTCAGCGAGGGAGATCACTCGCAGCCTCATATGTTTGTTCCCTGGTTTGGACGACCCATCAGTGTCTTGTCCTTGTCTGAATGTGATTATACATTTGGAAGAGTCATTGTCTCTGAAAATCCCGGCGACTACAAAGGCTCTCTCAAGCTGTCTCTCACTCCCGGATCGGTTCTTTTGGTGGAAGGCAAATCCGCAAATCTTGCTAAGTATGCAATTCACGCAACCCGAAAGCAACGGATACTCATTAGCTTCATCAAATCTAAACCGAGAAACTCTAACTGGGGACCACCGCCGAGCAGATCGCCAAATCAGCACATCCGTCACCCAACCGGCCCACCTAAACACTACCCTGTTGTTATCCCGTCCACTGGTGTCTTGCCCACTCCGTCTCACCGCCCACCAAACGGAGCTGTTCAACCGATTTTCATCCCTCCTTCTCCTCCACTTGCCTCTCCAATGCCGTTCCCAGGTGGTGTACCAACCGGGCCGCCTGTCTGGCCACTGCTGCCACCTCATCCACGACACCAGACAGCACCACAACCTCGAATGCCCATCCCAGGCACTGGTGTGTTCCTCCCACCCGGTTCAAATCAAGAACTGGCTGACAACAGCAACGGAACAGAAGGAAAATTAGATTTGAAGGCGAAAGAAGAAGCTCGTAACGGATTTGGTGAAGGGGAATGCGATGGCAGTAACGGTAAACAGAGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

601

Amino Acids

66.2

Weight (kDa)

8.09

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
AccB7I CCANNNNNTGG 2 cut(s) 17, 1655
AccII CGCG 1 cut(s) 134
AciI CCGC 8 cut(s) 113, 125, 167, 965, 1284, 1382, 1486, 1580
AclI AACGTT 1 cut(s) 1036
AclWI GGATC 5 cut(s) 67, 80, 183, 928, 1264
AcoI YGGCCR 2 cut(s) 905, 1589
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 2 cut(s) 272, 1078
AfaI GTAC 2 cut(s) 188, 1569
AfiI CCNNNNNNNGG 8 cut(s) 17, 914, 1139, 1460, 1496, 1559, 1649, 1655
AgsI TTSAA 8 cut(s) 460, 740, 784, 878, 1034, 1508, 1680, 1732
AjiI CACGTC 1 cut(s) 926
AjnI CCWGG 7 cut(s) 16, 101, 227, 382, 1133, 1558, 1648
AjuI GAANNNNNNNTTGG 2 cut(s) 930, 962
AleI CACNNNNGTG 1 cut(s) 1658
AluBI AGCT 9 cut(s) 428, 500, 787, 956, 1016, 1240, 1341, 1502, 1748
AluI AGCT 9 cut(s) 428, 500, 787, 956, 1016, 1240, 1341, 1502, 1748
Alw26I GTCTC 7 cut(s) 237, 671, 844, 1048, 1207, 1248, 1485
AlwI GGATC 5 cut(s) 67, 80, 183, 928, 1264
AlwNI CAGNNNCTG 2 cut(s) 383, 1655
Ama87I CYCGRG 1 cut(s) 646
AoxI GGCC 5 cut(s) 380, 905, 1423, 1577, 1589
ApeKI GCWGC 4 cut(s) 122, 250, 1114, 1597
ApoI RAATTY 1 cut(s) 359
AspS9I GGNCC 4 cut(s) 380, 1376, 1424, 1577
AsuC2I CCSGG 4 cut(s) 1215, 1254, 1576, 1674
AsuHPI GGTGA 3 cut(s) 1406, 1475, 1775
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 1 cut(s) 1376
BalI TGGCCA 1 cut(s) 1591
BamHI GGATCC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 938
BbvI GCAGC 4 cut(s) 109, 262, 1126, 1584
BccI CCATC 7 cut(s) 83, 430, 545, 1018, 1157, 1652, 1772
BceAI ACGGC 2 cut(s) 920, 1537
BciT130I CCWGG 7 cut(s) 18, 103, 229, 384, 1135, 1560, 1650
BciVI GTATCC 1 cut(s) 1323
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 4 cut(s) 1215, 1254, 1576, 1674
BcoDI GTCTC 7 cut(s) 237, 671, 844, 1048, 1207, 1248, 1485
BfmI CTRYAG 1 cut(s) 951
BfuI GTATCC 1 cut(s) 1323
BglI GCCNNNNNGGC 1 cut(s) 1588
BisI GCNGC 7 cut(s) 123, 126, 251, 965, 1115, 1580, 1598
BlpI GCTNAGC 1 cut(s) 223
BlsI GCNGC 7 cut(s) 124, 127, 252, 966, 1116, 1581, 1599
Bme18I GGWCC 1 cut(s) 1376
BmeT110I CYCGRG 1 cut(s) 646
BmgBI CACGTC 1 cut(s) 926
BmgT120I GGNCC 4 cut(s) 380, 1376, 1424, 1577
BmiI GGNNCC 2 cut(s) 74, 1377
BmrI ACTGGG 2 cut(s) 257, 1381
BmsI GCATC 5 cut(s) 166, 406, 496, 742, 1089
BmuI ACTGGG 2 cut(s) 257, 1381
BpiI GAAGAC 1 cut(s) 938
Bpu1102I GCTNAGC 1 cut(s) 223
BpuEI CTTGAG 3 cut(s) 219, 597, 1220
BpuMI CCSGG 4 cut(s) 1215, 1254, 1576, 1674
Bsa29I ATCGAT 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 1517
BsaI GGTCTC 2 cut(s) 237, 1048
BsaJI CCNNGG 5 cut(s) 383, 566, 1133, 1558, 1648
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bsc4I CCNNNNNNNGG 8 cut(s) 17, 914, 1139, 1460, 1496, 1559, 1649, 1655
Bse118I RCCGGY 1 cut(s) 1421
Bse1I ACTGG 5 cut(s) 263, 1376, 1465, 1660, 1695
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 1517
BseBI CCWGG 7 cut(s) 18, 103, 229, 384, 1135, 1560, 1650
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 5 cut(s) 383, 566, 1133, 1558, 1648
BseGI GGATG 4 cut(s) 1407, 1518, 1606, 1644
BseJI GATNNNNATC 1 cut(s) 1517
BseLI CCNNNNNNNGG 8 cut(s) 17, 914, 1139, 1460, 1496, 1559, 1649, 1655
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 30, 666, 839
BseNI ACTGG 5 cut(s) 263, 1376, 1465, 1660, 1695
BseRI GAGGAG 6 cut(s) 48, 438, 583, 632, 704, 1521
BseXI GCAGC 4 cut(s) 109, 262, 1126, 1584
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 5 cut(s) 382, 907, 1425, 1579, 1591
BshVI ATCGAT 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 6 cut(s) 62, 1215, 1254, 1422, 1575, 1674
BslFI GGGAC 1 cut(s) 1389
BslI CCNNNNNNNGG 8 cut(s) 17, 914, 1139, 1460, 1496, 1559, 1649, 1655
BsmAI GTCTC 7 cut(s) 237, 671, 844, 1048, 1207, 1248, 1485
BsmBI CGTCTC 1 cut(s) 1485
BsmFI GGGAC 1 cut(s) 1389
BsmI GAATGC 3 cut(s) 207, 1644, 1778
BsnI GGCC 5 cut(s) 382, 907, 1425, 1579, 1591
Bso31I GGTCTC 2 cut(s) 237, 1048
BsoBI CYCGRG 1 cut(s) 646
Bsp1720I GCTNAGC 1 cut(s) 223
BspACI CCGC 8 cut(s) 113, 125, 167, 965, 1284, 1382, 1486, 1580
BspANI GGCC 5 cut(s) 382, 907, 1425, 1579, 1591
BspCNI CTCAG 3 cut(s) 31, 667, 840
BspDI ATCGAT 1 cut(s) 141
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 74, 1377
BspPI GGATC 5 cut(s) 67, 80, 183, 928, 1264
BspTNI GGTCTC 2 cut(s) 237, 1048
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 1421
BsrI ACTGG 5 cut(s) 263, 1376, 1465, 1660, 1695
BssAI RCCGGY 1 cut(s) 1421
BssECI CCNNGG 5 cut(s) 383, 566, 1133, 1558, 1648
Bst2UI CCWGG 7 cut(s) 18, 103, 229, 384, 1135, 1560, 1650
Bst4CI ACNGT 3 cut(s) 473, 665, 1790
Bst6I CTCTTC 4 cut(s) 534, 539, 859, 1186
BstAPI GCANNNNNTGC 1 cut(s) 1292
BstC8I GCNNGC 2 cut(s) 715, 1078
BstDEI CTNAG 6 cut(s) 39, 223, 501, 675, 848, 1296
BstF5I GGATG 4 cut(s) 1407, 1518, 1606, 1644
BstFNI CGCG 1 cut(s) 134
BstMAI GTCTC 7 cut(s) 237, 671, 844, 1048, 1207, 1248, 1485
BstNI CCWGG 7 cut(s) 18, 103, 229, 384, 1135, 1560, 1650
BstNSI RCATGY 1 cut(s) 1080
BstSFI CTRYAG 1 cut(s) 951
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 4 cut(s) 109, 262, 1126, 1584
BstV2I GAAGAC 1 cut(s) 938
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
Bsu15I ATCGAT 1 cut(s) 141
BsuI GTATCC 1 cut(s) 1323
BsuRI GGCC 5 cut(s) 382, 907, 1425, 1579, 1591
BsuTUI ATCGAT 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 1791
BtrI CACGTC 1 cut(s) 926
BtsCI GGATG 4 cut(s) 1407, 1518, 1606, 1644
BtsI GCAGTG 1 cut(s) 1592
BtsIMutI CAGTG 5 cut(s) 478, 1159, 1458, 1592, 1653
Cac8I GCNNGC 2 cut(s) 715, 1078
CaiI CAGNNNCTG 2 cut(s) 383, 1655
Cfr10I RCCGGY 1 cut(s) 1421
Cfr13I GGNCC 4 cut(s) 380, 1376, 1424, 1577
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 2 cut(s) 815, 1082
Csp6I GTAC 2 cut(s) 187, 1568
CviAII CATG 4 cut(s) 401, 718, 920, 1077
CviQI GTAC 2 cut(s) 187, 1568
DdeI CTNAG 6 cut(s) 39, 223, 501, 675, 848, 1296
EaeI YGGCCR 2 cut(s) 905, 1589
Eam1104I CTCTTC 4 cut(s) 534, 539, 859, 1186
EarI CTCTTC 4 cut(s) 534, 539, 859, 1186
Eco31I GGTCTC 2 cut(s) 237, 1048
Eco47I GGWCC 1 cut(s) 1376
Eco57I CTGAAG 2 cut(s) 272, 1078
Eco88I CYCGRG 1 cut(s) 646
EcoO109I RGGNCCY 1 cut(s) 380
EcoRII CCWGG 7 cut(s) 16, 101, 227, 382, 1133, 1558, 1648
EcoT22I ATGCAT 1 cut(s) 1082
Esp3I CGTCTC 1 cut(s) 1485
FaeI CATG 4 cut(s) 404, 721, 923, 1080
FaqI GGGAC 1 cut(s) 1389
FatI CATG 4 cut(s) 400, 717, 919, 1076
FauNDI CATATG 2 cut(s) 889, 1122
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 7 cut(s) 123, 126, 251, 965, 1115, 1580, 1598
FokI GGATG 4 cut(s) 1394, 1505, 1593, 1631
Fsp4HI GCNGC 7 cut(s) 123, 126, 251, 965, 1115, 1580, 1598
GluI GCNGC 7 cut(s) 123, 126, 251, 965, 1115, 1580, 1598
HaeIII GGCC 5 cut(s) 382, 907, 1425, 1579, 1591
HapII CCGG 6 cut(s) 62, 1215, 1254, 1422, 1575, 1674
HgaI GACGC 2 cut(s) 815, 1082
Hin1II CATG 4 cut(s) 404, 721, 923, 1080
HincII GTYRAC 2 cut(s) 469, 872
HindII GTYRAC 2 cut(s) 469, 872
HinfI GANTC 5 cut(s) 143, 191, 431, 602, 1194
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 6 cut(s) 62, 1215, 1254, 1422, 1575, 1674
HphI GGTGA 3 cut(s) 1406, 1475, 1775
Hpy166II GTNNAC 5 cut(s) 469, 872, 1458, 1568, 1793
Hpy188I TCNGA 9 cut(s) 40, 203, 346, 607, 676, 849, 1024, 1171, 1207
Hpy188III TCNNGA 4 cut(s) 491, 614, 740, 1685
Hpy8I GTNNAC 5 cut(s) 469, 872, 1458, 1568, 1793
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 6 cut(s) 770, 1268, 1536, 1709, 1726, 1760
HpyCH4III ACNGT 3 cut(s) 473, 665, 1790
HpyCH4IV ACGT 2 cut(s) 925, 1036
HpyCH4V TGCA 8 cut(s) 49, 250, 269, 536, 713, 755, 1080, 1304
HpyF3I CTNAG 6 cut(s) 39, 223, 501, 675, 848, 1296
HpySE526I ACGT 2 cut(s) 925, 1036
Hsp92II CATG 4 cut(s) 404, 721, 923, 1080
Ksp22I TGATCA 1 cut(s) 346
KspAI GTTAAC 1 cut(s) 469
LmnI GCTCC 3 cut(s) 365, 425, 1499
Lsp1109I GCAGC 4 cut(s) 109, 262, 1126, 1584
LweI GCATC 5 cut(s) 166, 406, 496, 742, 1089
MaeII ACGT 2 cut(s) 925, 1036
MaeIII GTNAC 7 cut(s) 25, 416, 641, 838, 1412, 1751, 1784
MflI RGATCY 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 1591
MluCI AATT 9 cut(s) 44, 67, 340, 359, 454, 593, 1305, 1721, 1801
MluNI TGGCCA 1 cut(s) 1591
MlyI GAGTC 1 cut(s) 1203
MmeI TCCRAC 1 cut(s) 961
Mox20I TGGCCA 1 cut(s) 1591
Mph1103I ATGCAT 1 cut(s) 1082
MscI TGGCCA 1 cut(s) 1591
MseI TTAA 4 cut(s) 390, 468, 519, 765
MslI CAYNNNNRTG 5 cut(s) 402, 405, 924, 1061, 1658
Msp20I TGGCCA 1 cut(s) 1591
MspI CCGG 6 cut(s) 62, 1215, 1254, 1422, 1575, 1674
Mva1269I GAATGC 3 cut(s) 207, 1644, 1778
MvaI CCWGG 7 cut(s) 18, 103, 229, 384, 1135, 1560, 1650
MvnI CGCG 1 cut(s) 134
NciI CCSGG 4 cut(s) 1215, 1254, 1576, 1674
NdeI CATATG 2 cut(s) 889, 1122
NlaIII CATG 4 cut(s) 404, 721, 923, 1080
NlaIV GGNNCC 2 cut(s) 74, 1377
NmeAIII GCCGAG 1 cut(s) 1410
NmuCI GTSAC 1 cut(s) 1412
NsiI ATGCAT 1 cut(s) 1082
NspI RCATGY 1 cut(s) 1080
OliI CACNNNNGTG 1 cut(s) 1658
PaeI GCATGC 1 cut(s) 1080
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 3 cut(s) 207, 1644, 1778
PfeI GAWTC 4 cut(s) 143, 191, 431, 602
PflMI CCANNNNNTGG 2 cut(s) 17, 1655
PfoI TCCNGGA 1 cut(s) 1252
PkrI GCNGC 7 cut(s) 124, 127, 252, 966, 1116, 1581, 1599
PleI GAGTC 1 cut(s) 1202
PpsI GAGTC 1 cut(s) 1202
PsiI TTATAA 1 cut(s) 900
Psp1406I AACGTT 1 cut(s) 1036
Psp6I CCWGG 7 cut(s) 16, 101, 227, 382, 1133, 1558, 1648
PspGI CCWGG 7 cut(s) 16, 101, 227, 382, 1133, 1558, 1648
PspN4I GGNNCC 2 cut(s) 74, 1377
PspPI GGNCC 4 cut(s) 380, 1376, 1424, 1577
PsrI GAACNNNNNNTAC 2 cut(s) 634, 666
PstNI CAGNNNCTG 2 cut(s) 383, 1655
PsuI RGATCY 1 cut(s) 72
RsaI GTAC 2 cut(s) 188, 1569
RsaNI GTAC 2 cut(s) 187, 1568
RseI CAYNNNNRTG 5 cut(s) 402, 405, 924, 1061, 1658
SaqAI TTAA 4 cut(s) 390, 468, 519, 765
SatI GCNGC 7 cut(s) 123, 126, 251, 965, 1115, 1580, 1598
Sau96I GGNCC 4 cut(s) 380, 1376, 1424, 1577
SchI GAGTC 1 cut(s) 1203
SfaNI GCATC 5 cut(s) 166, 406, 496, 742, 1089
SfcI CTRYAG 1 cut(s) 951
SinI GGWCC 1 cut(s) 1376
SmiMI CAYNNNNRTG 5 cut(s) 402, 405, 924, 1061, 1658
SmlI CTYRAG 3 cut(s) 234, 612, 1235
SmoI CTYRAG 3 cut(s) 234, 612, 1235
SphI GCATGC 1 cut(s) 1080
Sse9I AATT 9 cut(s) 44, 67, 340, 359, 454, 593, 1305, 1721, 1801
SsiI CCGC 8 cut(s) 113, 125, 167, 965, 1284, 1382, 1486, 1580
TaaI ACNGT 3 cut(s) 473, 665, 1790
TaiI ACGT 2 cut(s) 928, 1039
TaqI TCGA 5 cut(s) 141, 434, 774, 991, 1636
TaqII GACCGA 1 cut(s) 932
TasI AATT 9 cut(s) 44, 67, 340, 359, 454, 593, 1305, 1721, 1801
TauI GCSGC 3 cut(s) 128, 967, 1582
TfiI GAWTC 4 cut(s) 143, 191, 431, 602
Tru1I TTAA 4 cut(s) 390, 468, 519, 765
Tru9I TTAA 4 cut(s) 390, 468, 519, 765
TscAI CASTG 5 cut(s) 478, 1159, 1465, 1599, 1660
TseFI GTSAC 1 cut(s) 1412
TseI GCWGC 4 cut(s) 122, 250, 1114, 1597
Tsp45I GTSAC 1 cut(s) 1412
TspDTI ATGAA 3 cut(s) 200, 1333, 1507
TspGWI ACGGA 8 cut(s) 24, 184, 1342, 1400, 1467, 1512, 1722, 1770
TspRI CASTG 5 cut(s) 478, 1159, 1465, 1599, 1660
Van91I CCANNNNNTGG 2 cut(s) 17, 1655
VpaK11BI GGWCC 1 cut(s) 1376
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 1080
Zsp2I ATGCAT 1 cut(s) 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.