Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008548

Physical Location & Seq

Genomic Coordinates Reverse (-)

62716597 .. 62722125

Gene Structure 5529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCACCACAAGAAGATGAAATATCTGCAGGAATCTCCAAAGATCGGCGGATGGAAGCCATCCCCCTTGCTGCAGGATGTTATCGATCGCCTAGTTGGGATGCAAGTTTTGACTGTGAAGCCAGACTCCTGTATCATTGATTTCTTTAATGAGGGTGATCATTCACATCCTCACATGTGGCCAACGTGGTTTGGAAGGCCTGTTTGCGTCCTGTTTCTCACAGAATGTGACATGACTTTTGGGAAAGTATTAGGAATAGAACATCCTGGGGATTATCGAGGCTCTCTCAGACTTTCTCTTACACCTGGATCCCTCCTTTTGCTGCAAGGAAAATCAGCAGACTATGCAAAACATGCAATTCCTTCCATCCGGAAGCAACGTGTACTTGTCACTTTCACAAAGTCTCAACCAAGGAAATCCTTTCCAACTGATAGTCAGCGTCTTCCTTCATCTGGTCCCAGCCAGTCGCCCTACTGGAGTCCACCACCAAGTAGATCTCCAAATCACATCCGCCATCCTGTTGGTCCCAAGCACTATGCAGCAGTTTCAACAACTGGTGTATTGCCTGCACCACCTAATCGTCCCCAACTTCCACCTCCAAATGGCATCCAGCCTTTGTTTGTGGCTGCCCCTGTTGGACCAGCCATGCCTTTCCCTGCTCCAGTTGTCATCCCACCCGGTTCGCCTGGATGGGTAGCAGCTCCTAGGCACCCTCCACCTCGGATGCCTCTCCCCGGCACTGGAGTTTTCCTTCCTCCCCCAGGGTCAGAGAAAGACAATGGGACTGGAAAATCAAATCATGCAAGTGCTTCTCCTAAAGCAAAGTTGGATGGGAAACCTCAAAGGCAAGACTGCAATGGAACTGTGGATGCAACTGGCAGTGGAAGAGGAACAGTGAAGCAAGAGCAACAGCAGAACTCTAACAATCCGGCAGCAAACAATCAGGCTGGAGCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

319

Amino Acids

34.33

Weight (kDa)

9.88

Isoelectric Point (pI)

66.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14710 AT1G14710
fragaria_vesca	FvH4_4g33050 FvH4_4g33050 FvH4_4g33050
malus_domestica	MD13G1016200.v1.1 MD13G1016300.v1.1 MD16G1013800.v1.1
prunus_persica	Prupe.1G337300_v2.0.a1
pyrus_communis	pycom13g01400 pycom16g01300
rosa_chinensis	RchiOBHm_Chr4g0442091
rosa_laevigata	RLG00000006041
rosa_multiflora	Rmu_co8051702.1_g000001 Rmu_co8386629.1_g000001 Rmu_sc0002501.1_g000005
rosa_roxburghii	Rroxscaffold_5G00383000
rosa_rugosa	Rorug04G0338800.1
rosa_samantha	Rh4AG390300 Rh4BG403900 Rh4CG418900 Rh4DG396900
rosa_wichuraiana	Rw4G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	708
AccIII	TCCGGA	1 cut(s)	369
AciI	CCGC	2 cut(s)	48, 511
AclWI	GGATC	2 cut(s)	303, 316
AcoI	YGGCCR	1 cut(s)	179
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	6 cut(s)	44, 452, 602, 734, 740, 761
AflIII	ACRYGT	2 cut(s)	174, 379
AgsI	TTSAA	1 cut(s)	549
AjnI	CCWGG	4 cut(s)	265, 304, 685, 760
AluBI	AGCT	1 cut(s)	701
AluI	AGCT	1 cut(s)	701
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	303, 316
Aor13HI	TCCGGA	1 cut(s)	369
AoxI	GGCC	2 cut(s)	179, 197
ApeKI	GCWGC	6 cut(s)	70, 322, 539, 626, 698, 932
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspA2I	CCTAGG	1 cut(s)	704
AspS9I	GGNCC	3 cut(s)	455, 524, 638
AsuC2I	CCSGG	2 cut(s)	678, 735
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	3 cut(s)	455, 524, 638
AvrII	CCTAGG	1 cut(s)	704
BaeI	ACNNNNGTAYC	2 cut(s)	115, 148
BalI	TGGCCA	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	708
BbsI	GAAGAC	1 cut(s)	434
BbvI	GCAGC	6 cut(s)	57, 309, 551, 613, 710, 944
BccI	CCATC	6 cut(s)	45, 67, 374, 522, 684, 824
BciT130I	CCWGG	4 cut(s)	267, 306, 687, 762
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	678, 735
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	2 cut(s)	92, 705
BfmI	CTRYAG	2 cut(s)	26, 71
BglII	AGATCT	1 cut(s)	494
BisI	GCNGC	6 cut(s)	71, 323, 540, 627, 699, 933
BlnI	CCTAGG	1 cut(s)	704
BlsI	GCNGC	6 cut(s)	72, 324, 541, 628, 700, 934
Bme1390I	CCNGG	6 cut(s)	267, 306, 678, 687, 735, 762
Bme18I	GGWCC	3 cut(s)	455, 524, 638
BmgT120I	GGNCC	3 cut(s)	455, 524, 638
BmiI	GGNNCC	4 cut(s)	310, 457, 526, 710
BmrFI	CCNGG	6 cut(s)	267, 306, 678, 687, 735, 762
BmsI	GCATC	4 cut(s)	90, 615, 714, 859
BpiI	GAAGAC	1 cut(s)	434
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	3 cut(s)	496, 645, 762
BpuMI	CCSGG	2 cut(s)	678, 735
Bsa29I	ATCGAT	1 cut(s)	84
BsaJI	CCNNGG	7 cut(s)	266, 410, 704, 719, 733, 760, 761
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 452, 602, 734, 740, 761
Bse1I	ACTGG	7 cut(s)	463, 479, 559, 662, 745, 790, 880
Bse3DI	GCAATG	1 cut(s)	862
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	4 cut(s)	267, 306, 687, 762
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	7 cut(s)	266, 410, 704, 719, 733, 760, 761
BseLI	CCNNNNNNNGG	6 cut(s)	44, 452, 602, 734, 740, 761
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	1 cut(s)	301
BseNI	ACTGG	7 cut(s)	463, 479, 559, 662, 745, 790, 880
BseXI	GCAGC	6 cut(s)	57, 309, 551, 613, 710, 944
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	552
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	181, 199
BshNI	GGYRCC	1 cut(s)	708
BshVI	ATCGAT	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	88
BsiSI	CCGG	4 cut(s)	370, 678, 735, 929
BslFI	GGGAC	4 cut(s)	441, 510, 567, 796
BslI	CCNNNNNNNGG	6 cut(s)	44, 452, 602, 734, 740, 761
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	4 cut(s)	441, 510, 567, 796
BsnI	GGCC	2 cut(s)	181, 199
Bsp13I	TCCGGA	1 cut(s)	369
Bsp143I	GATC	5 cut(s)	42, 85, 157, 308, 494
BspACI	CCGC	2 cut(s)	48, 511
BspANI	GGCC	2 cut(s)	181, 199
BspCNI	CTCAG	1 cut(s)	300
BspDI	ATCGAT	1 cut(s)	84
BspEI	TCCGGA	1 cut(s)	369
BspLI	GGNNCC	4 cut(s)	310, 457, 526, 710
BspMAI	CTGCAG	2 cut(s)	30, 75
BspPI	GGATC	2 cut(s)	303, 316
BspT107I	GGYRCC	1 cut(s)	708
BsrDI	GCAATG	1 cut(s)	862
BsrI	ACTGG	7 cut(s)	463, 479, 559, 662, 745, 790, 880
BssECI	CCNNGG	7 cut(s)	266, 410, 704, 719, 733, 760, 761
BssMI	GATC	5 cut(s)	42, 85, 157, 308, 494
BssT1I	CCWWGG	2 cut(s)	410, 704
Bst2UI	CCWGG	4 cut(s)	267, 306, 687, 762
Bst4CI	ACNGT	3 cut(s)	115, 865, 895
Bst6I	CTCTTC	1 cut(s)	880
BstAPI	GCANNNNNTGC	2 cut(s)	344, 353
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	287
BstENI	CCTNNNNNAGG	1 cut(s)	759
BstKTI	GATC	5 cut(s)	45, 88, 160, 311, 497
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	5 cut(s)	42, 85, 157, 308, 494
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 353
BstNI	CCWGG	4 cut(s)	267, 306, 687, 762
BstNSI	RCATGY	2 cut(s)	178, 356
BstSCI	CCNGG	6 cut(s)	265, 304, 676, 685, 733, 760
BstSFI	CTRYAG	2 cut(s)	26, 71
BstV1I	GCAGC	6 cut(s)	57, 309, 551, 613, 710, 944
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	2 cut(s)	308, 494
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	2 cut(s)	308, 494
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	181, 199
BsuTUI	ATCGAT	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	3 cut(s)	738, 886, 900
Cac8I	GCNNGC	1 cut(s)	567
Cfr13I	GGNCC	3 cut(s)	455, 524, 638
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	2 cut(s)	196, 428
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	5 cut(s)	175, 232, 353, 646, 800
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	5 cut(s)	44, 87, 159, 310, 496
DpnII	GATC	5 cut(s)	42, 85, 157, 308, 494
EaeI	YGGCCR	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	880
EciI	GGCGGA	2 cut(s)	63, 500
Eco130I	CCWWGG	2 cut(s)	410, 704
Eco147I	AGGCCT	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	455, 524, 638
EcoNI	CCTNNNNNAGG	1 cut(s)	759
EcoRII	CCWGG	4 cut(s)	265, 304, 685, 760
EcoT14I	CCWWGG	2 cut(s)	410, 704
ErhI	CCWWGG	2 cut(s)	410, 704
FaeI	CATG	5 cut(s)	178, 235, 356, 649, 803
FaiI	YATR	7 cut(s)	176, 233, 345, 354, 537, 647, 801
FaqI	GGGAC	4 cut(s)	441, 510, 567, 796
FatI	CATG	5 cut(s)	174, 231, 352, 645, 799
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	6 cut(s)	71, 323, 540, 627, 699, 933
Fsp4HI	GCNGC	6 cut(s)	71, 323, 540, 627, 699, 933
FspBI	CTAG	2 cut(s)	92, 705
GluI	GCNGC	6 cut(s)	71, 323, 540, 627, 699, 933
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	3 cut(s)	496, 645, 762
HaeIII	GGCC	2 cut(s)	181, 199
HapII	CCGG	4 cut(s)	370, 678, 735, 929
HgaI	GACGC	2 cut(s)	196, 428
Hin1II	CATG	5 cut(s)	178, 235, 356, 649, 803
HinfI	GANTC	3 cut(s)	32, 125, 478
HpaII	CCGG	4 cut(s)	370, 678, 735, 929
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	383, 482
Hpy188I	TCNGA	3 cut(s)	290, 723, 769
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	383, 482
HpyAV	CCTTC	4 cut(s)	189, 372, 456, 761
HpyCH4III	ACNGT	3 cut(s)	115, 865, 895
HpyCH4IV	ACGT	2 cut(s)	185, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 353
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	2 cut(s)	185, 379
Hsp92II	CATG	5 cut(s)	178, 235, 356, 649, 803
Kpn2I	TCCGGA	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	42, 85, 157, 308, 494
LmnI	GCTCC	3 cut(s)	664, 706, 950
Lsp1109I	GCAGC	6 cut(s)	57, 309, 551, 613, 710, 944
LweI	GCATC	4 cut(s)	90, 615, 714, 859
MaeI	CTAG	2 cut(s)	92, 705
MaeII	ACGT	2 cut(s)	185, 379
MaeIII	GTNAC	2 cut(s)	227, 388
MalI	GATC	5 cut(s)	44, 87, 159, 310, 496
MboI	GATC	5 cut(s)	42, 85, 157, 308, 494
MboII	GAAGA	3 cut(s)	25, 434, 897
MflI	RGATCY	2 cut(s)	308, 494
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	1 cut(s)	357
MluNI	TGGCCA	1 cut(s)	181
MlyI	GAGTC	2 cut(s)	119, 487
MmeI	TCCRAC	3 cut(s)	449, 616, 807
Mox20I	TGGCCA	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	804
Msp20I	TGGCCA	1 cut(s)	181
MspI	CCGG	4 cut(s)	370, 678, 735, 929
MspR9I	CCNGG	6 cut(s)	267, 306, 678, 687, 735, 762
MvaI	CCWGG	4 cut(s)	267, 306, 687, 762
MwoI	GCNNNNNNNGC	2 cut(s)	344, 353
NciI	CCSGG	2 cut(s)	678, 735
NdeII	GATC	5 cut(s)	42, 85, 157, 308, 494
NlaIII	CATG	5 cut(s)	178, 235, 356, 649, 803
NlaIV	GGNNCC	4 cut(s)	310, 457, 526, 710
NmuCI	GTSAC	2 cut(s)	227, 388
NspI	RCATGY	2 cut(s)	178, 356
PasI	CCCWGGG	1 cut(s)	761
PceI	AGGCCT	1 cut(s)	199
PciI	ACATGT	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	6 cut(s)	72, 324, 541, 628, 700, 934
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	2 cut(s)	119, 486
PpsI	GAGTC	2 cut(s)	119, 486
PscI	ACATGT	1 cut(s)	174
Psp6I	CCWGG	4 cut(s)	265, 304, 685, 760
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	4 cut(s)	265, 304, 685, 760
PspN4I	GGNNCC	4 cut(s)	310, 457, 526, 710
PspPI	GGNCC	3 cut(s)	455, 524, 638
PstI	CTGCAG	2 cut(s)	30, 75
PsuI	RGATCY	2 cut(s)	308, 494
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	6 cut(s)	71, 323, 540, 627, 699, 933
Sau3AI	GATC	5 cut(s)	42, 85, 157, 308, 494
Sau96I	GGNCC	3 cut(s)	455, 524, 638
SchI	GAGTC	2 cut(s)	119, 487
ScrFI	CCNGG	6 cut(s)	267, 306, 678, 687, 735, 762
SetI	ASST	8 cut(s)	188, 307, 382, 577, 598, 703, 721, 841
SfaNI	GCATC	4 cut(s)	90, 615, 714, 859
SfcI	CTRYAG	2 cut(s)	26, 71
SinI	GGWCC	3 cut(s)	455, 524, 638
SmiMI	CAYNNNNRTG	1 cut(s)	804
Sse9I	AATT	1 cut(s)	357
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	48, 511
SspMI	CTAG	2 cut(s)	92, 705
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	6 cut(s)	265, 304, 676, 685, 733, 760
StyI	CCWWGG	2 cut(s)	410, 704
TaaI	ACNGT	3 cut(s)	115, 865, 895
TaiI	ACGT	2 cut(s)	188, 382
TaqI	TCGA	2 cut(s)	84, 277
TasI	AATT	1 cut(s)	357
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	745, 886, 900
TseFI	GTSAC	2 cut(s)	227, 388
TseI	GCWGC	6 cut(s)	70, 322, 539, 626, 698, 932
Tsp45I	GTSAC	2 cut(s)	227, 388
TspDTI	ATGAA	2 cut(s)	32, 438
TspRI	CASTG	3 cut(s)	745, 886, 900
VpaK11BI	GGWCC	3 cut(s)	455, 524, 638
XagI	CCTNNNNNAGG	1 cut(s)	759
XceI	RCATGY	2 cut(s)	178, 356
XmaJI	CCTAGG	1 cut(s)	704
XspI	CTAG	2 cut(s)	92, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.