Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008548

Physical Location & Seq

Genomic Coordinates Reverse (-)

60862071 .. 60863707

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGGGACATGGAAGAGAGATGATTCAATTGGGAATCCCTATTGCAGATGCACCACAAGAAGATGAAATACCTGCAGGAATCTCCAAAGATCGGAGGATGGAAGCCATCCCCCCCTTGCTGCAGGATGTTATTGATCGCCTAGTTGGGATGCAAGTTTTGACTGTGAAGCCAGACTCCTGTATCATTGATTTCTTTAATGAGGGTGATCATTCACATCCTCACACGTGGCCATCGTGGTTTGGAAGGCCTGTTTGCGTCCTGTTTCTCACCAAATGTGACATGACTTTTGGGAGAGTATTAGGAATAGAACATCCTGGGGATTATCGAGGCTCTCTCAAACTTTCTCTTACACCTGGATCCCTCCTTTTGCTGCAAGGAAAATCAGCAGACTATGCAAAACATGCAATTCCTTCCATCCGGAAGCAACGTATACTCGTCACTTTCACAAAGTCTCAACCAAGGAAATCCTTTCCAACTGATAGTCAGCGTCTTCCTTCATCTGGTCCCAGCCAGTCACCCTACTGGAGTCCACCACCAAGTAGATCTCCAAACCACATCCGCCATCCTGTTGGTCCCAAGCACTATGCAGCAGTTTCAACAACTGGTGTATTGCCTGCACCCCCTAATCGTCCCCAACTTCCACCACCAAATGGCATCCAGCCTTTGTTTGTGGCTGCCCCTGTTGGACCAGCCATGCCTTTCCCTGCTCCAGTTGTCATCCCACCTGGTTCGCCTGGATGGGTAGCAGCTCCTAGGCACCCTCCACCTCGGATGCCTCTCCCCGGCACTGGAGTTTTCCTTCCTCCCCCAGGGTCAGAGAAAGACAATGGGACTGGAAAATCAAATCATGCAAGTGCTTCTCCCAAAGCAAAGTTGGATGGGAAATCTCAAGGCAAGACTGCAATGGAACTGTGGATGCAACTGGCAGTGGAAGAGGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

315

Amino Acids

34.05

Weight (kDa)

9.46

Isoelectric Point (pI)

62.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14710 AT1G14710
fragaria_vesca	FvH4_4g33050 FvH4_4g33050 FvH4_4g33050
malus_domestica	MD13G1016200.v1.1 MD13G1016300.v1.1 MD16G1013800.v1.1
prunus_persica	Prupe.1G337300_v2.0.a1
pyrus_communis	pycom13g01400 pycom16g01300
rosa_chinensis	RchiOBHm_Chr4g0442091
rosa_laevigata	RLG00000006041
rosa_multiflora	Rmu_co8051702.1_g000001 Rmu_co8386629.1_g000001 Rmu_sc0002501.1_g000005
rosa_roxburghii	Rroxscaffold_5G00383000
rosa_rugosa	Rorug04G0338800.1
rosa_samantha	Rh4AG390300 Rh4BG403900 Rh4CG418900 Rh4DG396900
rosa_wichuraiana	Rw4G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	759
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	433
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	1 cut(s)	562
AclWI	GGATC	2 cut(s)	354, 367
AcoI	YGGCCR	1 cut(s)	230
AcvI	CACGTG	1 cut(s)	228
AfiI	CCNNNNNNNGG	6 cut(s)	93, 503, 653, 785, 791, 812
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	29, 600
AjnI	CCWGG	5 cut(s)	316, 355, 727, 736, 811
AluBI	AGCT	1 cut(s)	752
AluI	AGCT	1 cut(s)	752
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	354, 367
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	2 cut(s)	230, 248
ApeKI	GCWGC	5 cut(s)	121, 373, 590, 677, 749
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspA2I	CCTAGG	1 cut(s)	755
AspS9I	GGNCC	3 cut(s)	506, 575, 689
AsuC2I	CCSGG	1 cut(s)	786
AsuHPI	GGTGA	3 cut(s)	218, 262, 510
AvaII	GGWCC	3 cut(s)	506, 575, 689
AvrII	CCTAGG	1 cut(s)	755
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BalI	TGGCCA	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	759
BarI	GAAGNNNNNNTAC	2 cut(s)	54, 86
BbrPI	CACGTG	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	485
BbvI	GCAGC	5 cut(s)	108, 360, 602, 664, 761
BccI	CCATC	7 cut(s)	94, 116, 241, 425, 573, 735, 875
BciT130I	CCWGG	5 cut(s)	318, 357, 729, 738, 813
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	2 cut(s)	143, 756
BfmI	CTRYAG	2 cut(s)	75, 122
BfuAI	ACCTGC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	5 cut(s)	122, 374, 591, 678, 750
BlnI	CCTAGG	1 cut(s)	755
BlsI	GCNGC	5 cut(s)	123, 375, 592, 679, 751
Bme1390I	CCNGG	6 cut(s)	318, 357, 729, 738, 786, 813
Bme18I	GGWCC	3 cut(s)	506, 575, 689
BmgT120I	GGNCC	3 cut(s)	506, 575, 689
BmiI	GGNNCC	4 cut(s)	361, 508, 577, 761
BmrFI	CCNGG	6 cut(s)	318, 357, 729, 738, 786, 813
BmsI	GCATC	5 cut(s)	40, 141, 666, 765, 909
BpiI	GAAGAC	1 cut(s)	485
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
BpmI	CTGGAG	3 cut(s)	547, 696, 813
BpuEI	CTTGAG	1 cut(s)	876
BpuMI	CCSGG	1 cut(s)	786
BsaAI	YACGTR	1 cut(s)	228
BsaJI	CCNNGG	7 cut(s)	317, 461, 755, 770, 784, 811, 812
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 503, 653, 785, 791, 812
Bse1I	ACTGG	7 cut(s)	514, 530, 610, 713, 796, 841, 930
Bse3DI	GCAATG	1 cut(s)	912
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	5 cut(s)	318, 357, 729, 738, 813
BseDI	CCNNGG	7 cut(s)	317, 461, 755, 770, 784, 811, 812
BseLI	CCNNNNNNNGG	6 cut(s)	93, 503, 653, 785, 791, 812
BseMI	GCAATG	1 cut(s)	912
BseNI	ACTGG	7 cut(s)	514, 530, 610, 713, 796, 841, 930
BseXI	GCAGC	5 cut(s)	108, 360, 602, 664, 761
BseYI	CCCAGC	1 cut(s)	509
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	2 cut(s)	232, 250
BshNI	GGYRCC	1 cut(s)	759
BsiSI	CCGG	2 cut(s)	421, 786
BslFI	GGGAC	5 cut(s)	21, 492, 561, 618, 847
BslI	CCNNNNNNNGG	6 cut(s)	93, 503, 653, 785, 791, 812
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	5 cut(s)	21, 492, 561, 618, 847
BsnI	GGCC	2 cut(s)	232, 250
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	5 cut(s)	91, 136, 208, 359, 545
BspACI	CCGC	1 cut(s)	562
BspANI	GGCC	2 cut(s)	232, 250
BspEI	TCCGGA	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	361, 508, 577, 761
BspMAI	CTGCAG	2 cut(s)	79, 126
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	354, 367
BspT107I	GGYRCC	1 cut(s)	759
BsrDI	GCAATG	1 cut(s)	912
BsrI	ACTGG	7 cut(s)	514, 530, 610, 713, 796, 841, 930
BssECI	CCNNGG	7 cut(s)	317, 461, 755, 770, 784, 811, 812
BssMI	GATC	5 cut(s)	91, 136, 208, 359, 545
BssNAI	GTATAC	1 cut(s)	434
BssT1I	CCWWGG	2 cut(s)	461, 755
Bst1107I	GTATAC	1 cut(s)	434
Bst2UI	CCWGG	5 cut(s)	318, 357, 729, 738, 813
Bst4CI	ACNGT	3 cut(s)	166, 915, 945
Bst6I	CTCTTC	2 cut(s)	10, 930
BstAPI	GCANNNNNTGC	2 cut(s)	395, 404
BstBAI	YACGTR	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	618
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstKTI	GATC	5 cut(s)	94, 139, 211, 362, 548
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	5 cut(s)	91, 136, 208, 359, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 404
BstNI	CCWGG	5 cut(s)	318, 357, 729, 738, 813
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	6 cut(s)	316, 355, 727, 736, 784, 811
BstSFI	CTRYAG	2 cut(s)	75, 122
BstV1I	GCAGC	5 cut(s)	108, 360, 602, 664, 761
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	2 cut(s)	359, 545
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	2 cut(s)	359, 545
BstZ17I	GTATAC	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	232, 250
BtsI	GCAGTG	1 cut(s)	936
BtsIMutI	CAGTG	2 cut(s)	789, 936
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	618
Cfr13I	GGNCC	3 cut(s)	506, 575, 689
CseI	GACGC	2 cut(s)	247, 479
CsiI	ACCWGGT	1 cut(s)	727
CviAII	CATG	5 cut(s)	11, 283, 404, 697, 851
DpnI	GATC	5 cut(s)	93, 138, 210, 361, 547
DpnII	GATC	5 cut(s)	91, 136, 208, 359, 545
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	10, 930
EarI	CTCTTC	2 cut(s)	10, 930
EciI	GGCGGA	1 cut(s)	551
Eco130I	CCWWGG	2 cut(s)	461, 755
Eco147I	AGGCCT	1 cut(s)	250
Eco47I	GGWCC	3 cut(s)	506, 575, 689
Eco72I	CACGTG	1 cut(s)	228
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoRII	CCWGG	5 cut(s)	316, 355, 727, 736, 811
EcoT14I	CCWWGG	2 cut(s)	461, 755
ErhI	CCWWGG	2 cut(s)	461, 755
FaeI	CATG	5 cut(s)	14, 286, 407, 700, 854
FaiI	YATR	8 cut(s)	12, 284, 396, 405, 434, 588, 698, 852
FaqI	GGGAC	5 cut(s)	21, 492, 561, 618, 847
FatI	CATG	5 cut(s)	10, 282, 403, 696, 850
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	122, 374, 591, 678, 750
Fsp4HI	GCNGC	5 cut(s)	122, 374, 591, 678, 750
FspBI	CTAG	2 cut(s)	143, 756
GluI	GCNGC	5 cut(s)	122, 374, 591, 678, 750
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	3 cut(s)	547, 696, 813
HaeIII	GGCC	2 cut(s)	232, 250
HapII	CCGG	2 cut(s)	421, 786
HgaI	GACGC	2 cut(s)	247, 479
Hin1II	CATG	5 cut(s)	14, 286, 407, 700, 854
HinfI	GANTC	5 cut(s)	25, 36, 81, 176, 529
HpaII	CCGG	2 cut(s)	421, 786
HphI	GGTGA	3 cut(s)	218, 262, 510
Hpy166II	GTNNAC	2 cut(s)	434, 533
Hpy188I	TCNGA	3 cut(s)	96, 774, 820
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	2 cut(s)	434, 533
HpyAV	CCTTC	4 cut(s)	240, 423, 507, 812
HpyCH4III	ACNGT	3 cut(s)	166, 915, 945
HpyCH4IV	ACGT	2 cut(s)	227, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 404
HpySE526I	ACGT	2 cut(s)	227, 430
Hsp92II	CATG	5 cut(s)	14, 286, 407, 700, 854
Kpn2I	TCCGGA	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	5 cut(s)	91, 136, 208, 359, 545
LmnI	GCTCC	2 cut(s)	715, 757
Lsp1109I	GCAGC	5 cut(s)	108, 360, 602, 664, 761
LweI	GCATC	5 cut(s)	40, 141, 666, 765, 909
MabI	ACCWGGT	1 cut(s)	727
MaeI	CTAG	2 cut(s)	143, 756
MaeII	ACGT	2 cut(s)	227, 430
MaeIII	GTNAC	3 cut(s)	278, 439, 516
MalI	GATC	5 cut(s)	93, 138, 210, 361, 547
MboI	GATC	5 cut(s)	91, 136, 208, 359, 545
MboII	GAAGA	4 cut(s)	27, 74, 485, 947
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	2 cut(s)	359, 545
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	2 cut(s)	29, 408
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	2 cut(s)	170, 538
MmeI	TCCRAC	3 cut(s)	500, 667, 858
Mox20I	TGGCCA	1 cut(s)	232
MroI	TCCGGA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	855
Msp20I	TGGCCA	1 cut(s)	232
MspI	CCGG	2 cut(s)	421, 786
MspR9I	CCNGG	6 cut(s)	318, 357, 729, 738, 786, 813
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	5 cut(s)	318, 357, 729, 738, 813
MwoI	GCNNNNNNNGC	2 cut(s)	395, 404
NciI	CCSGG	1 cut(s)	786
NdeII	GATC	5 cut(s)	91, 136, 208, 359, 545
NlaIII	CATG	5 cut(s)	14, 286, 407, 700, 854
NlaIV	GGNNCC	4 cut(s)	361, 508, 577, 761
NmuCI	GTSAC	3 cut(s)	278, 439, 516
NspI	RCATGY	1 cut(s)	407
PasI	CCCWGGG	1 cut(s)	812
PceI	AGGCCT	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	25, 36, 81
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	5 cut(s)	123, 375, 592, 679, 751
PleI	GAGTC	2 cut(s)	170, 537
PmaCI	CACGTG	1 cut(s)	228
PmlI	CACGTG	1 cut(s)	228
PpsI	GAGTC	2 cut(s)	170, 537
Ppu21I	YACGTR	1 cut(s)	228
Psp6I	CCWGG	5 cut(s)	316, 355, 727, 736, 811
PspCI	CACGTG	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	5 cut(s)	316, 355, 727, 736, 811
PspN4I	GGNNCC	4 cut(s)	361, 508, 577, 761
PspPI	GGNCC	3 cut(s)	506, 575, 689
PstI	CTGCAG	2 cut(s)	79, 126
PsuI	RGATCY	2 cut(s)	359, 545
RseI	CAYNNNNRTG	1 cut(s)	855
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	5 cut(s)	122, 374, 591, 678, 750
Sau3AI	GATC	5 cut(s)	91, 136, 208, 359, 545
Sau96I	GGNCC	3 cut(s)	506, 575, 689
SbfI	CCTGCAGG	1 cut(s)	79
SchI	GAGTC	2 cut(s)	170, 538
ScrFI	CCNGG	6 cut(s)	318, 357, 729, 738, 786, 813
SdaI	CCTGCAGG	1 cut(s)	79
SetI	ASST	7 cut(s)	76, 230, 358, 433, 730, 754, 772
SexAI	ACCWGGT	1 cut(s)	727
SfaNI	GCATC	5 cut(s)	40, 141, 666, 765, 909
SfcI	CTRYAG	2 cut(s)	75, 122
SinI	GGWCC	3 cut(s)	506, 575, 689
SmiMI	CAYNNNNRTG	1 cut(s)	855
SmlI	CTYRAG	1 cut(s)	891
SmoI	CTYRAG	1 cut(s)	891
Sse8387I	CCTGCAGG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	29, 408
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	562
SspMI	CTAG	2 cut(s)	143, 756
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	6 cut(s)	316, 355, 727, 736, 784, 811
StyI	CCWWGG	2 cut(s)	461, 755
TaaI	ACNGT	3 cut(s)	166, 915, 945
TaiI	ACGT	2 cut(s)	230, 433
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	29, 408
TfiI	GAWTC	3 cut(s)	25, 36, 81
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	796, 936
TseFI	GTSAC	3 cut(s)	278, 439, 516
TseI	GCWGC	5 cut(s)	121, 373, 590, 677, 749
Tsp45I	GTSAC	3 cut(s)	278, 439, 516
TspDTI	ATGAA	3 cut(s)	17, 81, 489
TspRI	CASTG	2 cut(s)	796, 936
Van91I	CCANNNNNTGG	1 cut(s)	653
VpaK11BI	GGWCC	3 cut(s)	506, 575, 689
XagI	CCTNNNNNAGG	1 cut(s)	810
XceI	RCATGY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	874
XmaJI	CCTAGG	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	2 cut(s)	143, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.