Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386629.1

Orthogroup ID

OG0008548

Physical Location & Seq

Genomic Coordinates Forward (+)

441 .. 1031

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgccatcggggaatgtggttttatccgacaaaatgcagtatcctagtggcgccgccggcgagatccaccagcagcctcctcggcagtggttcccggatgaacgtgacgggttcatctcgtggctgcggggtgagtttgcggcggccaatgcgataatagactcgctctgccaccatttgcgtgcagtgggtgagccgagtgagtatgacatggtgatcgggagtattcagcagaggaggtgcaattggacccccgtgcttcatatgcagcagtacttttccgtggcggaggtgatatatgcgctgcagcaggttgcgtggaggaagcagcagaggtaccatgagccagtgaaaatggggaacaaggagtataagaggtcgaattctggtgtggggtttaagccgagaagtgagcctgtcaaggaatggcataatgctagtgtagagtatcgtagttatgaggggagtggtttggagaaagtggggagcgagatacgtgaggaagtcaagcctggtggagaggcggggaaagtggatgataagggggtggcgccggctgcagagaagaaaggtagtcttttgggtttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

196

Amino Acids

22.0

Weight (kDa)

7.02

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14710 AT1G14710
fragaria_vesca	FvH4_4g33050 FvH4_4g33050 FvH4_4g33050
malus_domestica	MD13G1016200.v1.1 MD13G1016300.v1.1 MD16G1013800.v1.1
prunus_persica	Prupe.1G337300_v2.0.a1
pyrus_communis	pycom13g01400 pycom16g01300
rosa_chinensis	RchiOBHm_Chr4g0442091
rosa_laevigata	RLG00000006041
rosa_multiflora	Rmu_co8051702.1_g000001 Rmu_co8386629.1_g000001 Rmu_sc0002501.1_g000005
rosa_roxburghii	Rroxscaffold_5G00383000
rosa_rugosa	Rorug04G0338800.1
rosa_samantha	Rh4AG390300 Rh4BG403900 Rh4CG418900 Rh4DG396900
rosa_wichuraiana	Rw4G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	3 cut(s)	50, 336, 550
AciI	CCGC	6 cut(s)	54, 127, 140, 143, 287, 524
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	382
AcyI	GRCGYC	2 cut(s)	51, 551
AfaI	GTAC	2 cut(s)	275, 338
AjnI	CCWGG	1 cut(s)	511
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	7 cut(s)	73, 124, 268, 304, 307, 328, 557
ApoI	RAATTY	1 cut(s)	382
Asp718I	GGTACC	1 cut(s)	336
AspLEI	GCGC	3 cut(s)	53, 304, 553
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	4 cut(s)	143, 203, 226, 304
AvaII	GGWCC	1 cut(s)	249
BanI	GGYRCC	3 cut(s)	50, 336, 550
BauI	CACGAG	1 cut(s)	118
BbvI	GCAGC	7 cut(s)	85, 111, 280, 291, 319, 340, 544
BccI	CCATC	1 cut(s)	13
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	95
BfaI	CTAG	2 cut(s)	45, 438
BfmI	CTRYAG	2 cut(s)	305, 558
BfoI	RGCGCY	2 cut(s)	54, 554
BfuAI	ACCTGC	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	51
BglI	GCCNNNNNGGC	1 cut(s)	82
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	95, 513
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	5 cut(s)	52, 92, 251, 338, 552
BmrFI	CCNGG	2 cut(s)	95, 513
BpuMI	CCSGG	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	497
BsaHI	GRCGYC	2 cut(s)	51, 551
BsaJI	CCNNGG	2 cut(s)	80, 282
Bse118I	RCCGGY	2 cut(s)	56, 553
Bse1I	ACTGG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	80, 282
BseGI	GGATG	2 cut(s)	103, 541
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	2 cut(s)	69, 250
BseXI	GCAGC	7 cut(s)	85, 111, 280, 291, 319, 340, 544
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	3 cut(s)	50, 336, 550
BsiSI	CCGG	3 cut(s)	57, 95, 554
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	63, 216
BspACI	CCGC	6 cut(s)	54, 127, 140, 143, 287, 524
BspANI	GGCC	1 cut(s)	146
BspLI	GGNNCC	5 cut(s)	52, 92, 251, 338, 552
BspMAI	CTGCAG	2 cut(s)	309, 562
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	3 cut(s)	50, 336, 550
BsrFI	RCCGGY	2 cut(s)	56, 553
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	2 cut(s)	56, 553
BssECI	CCNNGG	2 cut(s)	80, 282
BssMI	GATC	2 cut(s)	63, 216
BssNI	GRCGYC	2 cut(s)	51, 551
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	513
BstACI	GRCGYC	2 cut(s)	51, 551
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	58, 183, 555
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	103, 541
BstH2I	RGCGCY	2 cut(s)	54, 554
BstHHI	GCGC	3 cut(s)	53, 304, 553
BstKTI	GATC	2 cut(s)	66, 219
BstMBI	GATC	2 cut(s)	63, 216
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 82, 149, 265, 557
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	2 cut(s)	93, 511
BstSFI	CTRYAG	2 cut(s)	305, 558
BstV1I	GCAGC	7 cut(s)	85, 111, 280, 291, 319, 340, 544
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	103, 541
BtsI	GCAGTG	2 cut(s)	92, 192
BtsIMutI	CAGTG	3 cut(s)	92, 192, 354
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	3 cut(s)	58, 183, 555
CfoI	GCGC	3 cut(s)	53, 304, 553
Cfr10I	RCCGGY	2 cut(s)	56, 553
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	274, 337
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	2 cut(s)	211, 341
CviJI	RGCY	9 cut(s)	76, 124, 146, 196, 346, 403, 415, 511, 557
CviKI_1	RGCY	9 cut(s)	76, 124, 146, 196, 346, 403, 415, 511, 557
CviQI	GTAC	2 cut(s)	274, 337
DinI	GGCGCC	2 cut(s)	52, 552
DpnI	GATC	2 cut(s)	65, 218
DpnII	GATC	2 cut(s)	63, 216
EaeI	YGGCCR	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	511
EgeI	GGCGCC	2 cut(s)	52, 552
EheI	GGCGCC	2 cut(s)	52, 552
FaeI	CATG	2 cut(s)	214, 344
FalI	AAGNNNNNCTT	1 cut(s)	561
FatI	CATG	2 cut(s)	210, 340
FauI	CCCGC	2 cut(s)	120, 517
FauNDI	CATATG	1 cut(s)	264
FokI	GGATG	2 cut(s)	110, 548
FspBI	CTAG	2 cut(s)	45, 438
GlaI	GCGC	3 cut(s)	52, 303, 552
HaeII	RGCGCY	2 cut(s)	54, 554
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	3 cut(s)	57, 95, 554
HhaI	GCGC	3 cut(s)	53, 304, 553
Hin1I	GRCGYC	2 cut(s)	51, 551
Hin1II	CATG	2 cut(s)	214, 344
Hin6I	GCGC	3 cut(s)	51, 302, 551
HinP1I	GCGC	3 cut(s)	51, 302, 551
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	3 cut(s)	57, 95, 554
HphI	GGTGA	4 cut(s)	143, 203, 226, 304
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	220
HpyCH4IV	ACGT	2 cut(s)	103, 496
HpyCH4V	TGCA	6 cut(s)	37, 185, 243, 268, 307, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 82, 149, 265, 557
HpySE526I	ACGT	2 cut(s)	103, 496
Hsp92I	GRCGYC	2 cut(s)	51, 551
Hsp92II	CATG	2 cut(s)	214, 344
HspAI	GCGC	3 cut(s)	51, 302, 551
KasI	GGCGCC	2 cut(s)	50, 550
KpnI	GGTACC	1 cut(s)	340
KroI	GCCGGC	2 cut(s)	56, 553
KroNI	GCCGGC	2 cut(s)	58, 555
Kzo9I	GATC	2 cut(s)	63, 216
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	7 cut(s)	85, 111, 280, 291, 319, 340, 544
MaeI	CTAG	2 cut(s)	45, 438
MaeII	ACGT	2 cut(s)	103, 496
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	65, 218
MboI	GATC	2 cut(s)	63, 216
MboII	GAAGA	1 cut(s)	577
MfeI	CAATTG	1 cut(s)	244
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	2 cut(s)	244, 382
Mly113I	GGCGCC	2 cut(s)	51, 551
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	51
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	2 cut(s)	56, 553
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	3 cut(s)	57, 95, 554
MspR9I	CCNGG	2 cut(s)	95, 513
MunI	CAATTG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	5 cut(s)	57, 82, 149, 265, 557
NaeI	GCCGGC	2 cut(s)	58, 555
NarI	GGCGCC	2 cut(s)	51, 551
NciI	CCSGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	2 cut(s)	63, 216
NgoMIV	GCCGGC	2 cut(s)	56, 553
NlaIII	CATG	2 cut(s)	214, 344
NlaIV	GGNNCC	5 cut(s)	52, 92, 251, 338, 552
NmeAIII	GCCGAG	3 cut(s)	61, 222, 429
NmuCI	GTSAC	1 cut(s)	104
PdiI	GCCGGC	2 cut(s)	58, 555
PfoI	TCCNGGA	1 cut(s)	93
PleI	GAGTC	1 cut(s)	155
PluTI	GGCGCC	2 cut(s)	54, 554
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	5 cut(s)	52, 92, 251, 338, 552
PspPI	GGNCC	1 cut(s)	249
PstI	CTGCAG	2 cut(s)	309, 562
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	2 cut(s)	275, 338
RsaNI	GTAC	2 cut(s)	274, 337
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	63, 216
Sau96I	GGNCC	1 cut(s)	249
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	95, 513
SetI	ASST	8 cut(s)	106, 242, 294, 315, 338, 380, 499, 574
SfcI	CTRYAG	2 cut(s)	305, 558
SfoI	GGCGCC	2 cut(s)	52, 552
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	244, 382
SsiI	CCGC	6 cut(s)	54, 127, 140, 143, 287, 524
SspDI	GGCGCC	2 cut(s)	50, 550
SspMI	CTAG	2 cut(s)	45, 438
StyD4I	CCNGG	2 cut(s)	93, 511
TaiI	ACGT	2 cut(s)	106, 499
TaqI	TCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	244, 382
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	3 cut(s)	56, 143, 146
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	92, 192, 354
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	7 cut(s)	73, 124, 268, 304, 307, 328, 557
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	103, 114, 251
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	3 cut(s)	92, 192, 354
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	382
XspI	CTAG	2 cut(s)	45, 438
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.