Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8051702.1

Orthogroup ID

OG0008548

Physical Location & Seq

Genomic Coordinates Reverse (-)

17 .. 561

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8051702.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 545 bp

gtccaccaccaagtagatctccaaaccacatccgccatcctgttggtcccaagcactatgcagcagtttcaacaactggtgtattgcctgcaccacctaatcgtccccaacttccacctccaaatggcatccagcctttgtttgtggctgcccctgttggaccagccatgcctttccctgctccagttgtcatcccacctggttcgcctggatgggtagcagctcctaggcaccctccacctcggatgcctctccccggcactggagttttccttcctcccccagggtcaggtagttcatcagctcctcaacagtttccaagttctgcaacagaaatgaacctcactgttgagactgcttcttcaacagagaaagacaatgggactggaaaatcaaatcatgcaagtgcttctcccaaagcaaagttggatgggaaatctcaaaggcaagactgcaatggaactgtggatgcaactggcagtggaagaggaacagtgaagcaagagcaacagcagaactctaacaatccggctggagcagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

180

Amino Acids

18.33

Weight (kDa)

10.01

Isoelectric Point (pI)

75.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14710 AT1G14710
fragaria_vesca	FvH4_4g33050 FvH4_4g33050 FvH4_4g33050
malus_domestica	MD13G1016200.v1.1 MD13G1016300.v1.1 MD16G1013800.v1.1
prunus_persica	Prupe.1G337300_v2.0.a1
pyrus_communis	pycom13g01400 pycom16g01300
rosa_chinensis	RchiOBHm_Chr4g0442091
rosa_laevigata	RLG00000006041
rosa_multiflora	Rmu_co8051702.1_g000001 Rmu_co8386629.1_g000001 Rmu_sc0002501.1_g000005
rosa_roxburghii	Rroxscaffold_5G00383000
rosa_rugosa	Rorug04G0338800.1
rosa_samantha	Rh4AG390300 Rh4BG403900 Rh4CG418900 Rh4DG396900
rosa_wichuraiana	Rw4G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	1 cut(s)	33
AfiI	CCNNNNNNNGG	5 cut(s)	124, 256, 262, 283, 289
AgsI	TTSAA	2 cut(s)	71, 365
AjnI	CCWGG	3 cut(s)	198, 207, 282
AluBI	AGCT	2 cut(s)	223, 304
AluI	AGCT	2 cut(s)	223, 304
Alw26I	GTCTC	1 cut(s)	346
ApeKI	GCWGC	3 cut(s)	61, 148, 220
AspA2I	CCTAGG	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	46, 160
AsuC2I	CCSGG	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	46, 160
AvrII	CCTAGG	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	230
BbvI	GCAGC	3 cut(s)	73, 135, 232
BccI	CCATC	3 cut(s)	44, 206, 424
BciT130I	CCWGG	3 cut(s)	200, 209, 284
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	227
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	3 cut(s)	62, 149, 221
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	3 cut(s)	63, 150, 222
Bme1390I	CCNGG	4 cut(s)	200, 209, 257, 284
Bme18I	GGWCC	2 cut(s)	46, 160
BmgT120I	GGNCC	2 cut(s)	46, 160
BmiI	GGNNCC	2 cut(s)	48, 232
BmrFI	CCNGG	4 cut(s)	200, 209, 257, 284
BmsI	GCATC	3 cut(s)	137, 236, 459
BpmI	CTGGAG	2 cut(s)	167, 284
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	5 cut(s)	226, 241, 255, 282, 283
Bsc4I	CCNNNNNNNGG	5 cut(s)	124, 256, 262, 283, 289
Bse1I	ACTGG	5 cut(s)	81, 184, 267, 390, 480
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	3 cut(s)	200, 209, 284
BseDI	CCNNGG	5 cut(s)	226, 241, 255, 282, 283
BseGI	GGATG	8 cut(s)	29, 36, 128, 191, 217, 251, 435, 474
BseLI	CCNNNNNNNGG	5 cut(s)	124, 256, 262, 283, 289
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	5 cut(s)	81, 184, 267, 390, 480
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	73, 135, 232
BsgI	GTGCAG	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	257, 529
BslFI	GGGAC	3 cut(s)	32, 89, 396
BslI	CCNNNNNNNGG	5 cut(s)	124, 256, 262, 283, 289
BsmAI	GTCTC	1 cut(s)	346
BsmFI	GGGAC	3 cut(s)	32, 89, 396
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	48, 232
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	5 cut(s)	81, 184, 267, 390, 480
BssECI	CCNNGG	5 cut(s)	226, 241, 255, 282, 283
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	3 cut(s)	200, 209, 284
Bst4CI	ACNGT	4 cut(s)	314, 348, 465, 495
Bst6I	CTCTTC	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	89
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	8 cut(s)	29, 36, 128, 191, 217, 251, 435, 474
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	16
BstNI	CCWGG	3 cut(s)	200, 209, 284
BstSCI	CCNGG	4 cut(s)	198, 207, 255, 282
BstV1I	GCAGC	3 cut(s)	73, 135, 232
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	16
BtsCI	GGATG	8 cut(s)	29, 36, 128, 191, 217, 251, 435, 474
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	4 cut(s)	260, 344, 486, 500
Cac8I	GCNNGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	46, 160
CsiI	ACCWGGT	1 cut(s)	198
CviAII	CATG	2 cut(s)	168, 400
CviJI	RGCY	6 cut(s)	135, 148, 166, 223, 304, 532
CviKI_1	RGCY	6 cut(s)	135, 148, 166, 223, 304, 532
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	46, 160
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoRII	CCWGG	3 cut(s)	198, 207, 282
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	171, 403
FaiI	YATR	3 cut(s)	59, 169, 401
FaqI	GGGAC	3 cut(s)	32, 89, 396
FatI	CATG	2 cut(s)	167, 399
Fnu4HI	GCNGC	3 cut(s)	62, 149, 221
FokI	GGATG	8 cut(s)	16, 23, 115, 178, 224, 258, 442, 481
Fsp4HI	GCNGC	3 cut(s)	62, 149, 221
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	3 cut(s)	62, 149, 221
GsuI	CTGGAG	2 cut(s)	167, 284
HapII	CCGG	2 cut(s)	257, 529
Hin1II	CATG	2 cut(s)	171, 403
HpaII	CCGG	2 cut(s)	257, 529
Hpy166II	GTNNAC	1 cut(s)	4
Hpy188I	TCNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	4
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	4 cut(s)	314, 348, 465, 495
HpyCH4V	TGCA	6 cut(s)	61, 91, 328, 403, 455, 472
Hsp92II	CATG	2 cut(s)	171, 403
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	4 cut(s)	186, 228, 309, 535
Lsp1109I	GCAGC	3 cut(s)	73, 135, 232
LweI	GCATC	3 cut(s)	137, 236, 459
MabI	ACCWGGT	1 cut(s)	198
MaeI	CTAG	1 cut(s)	227
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	353, 497
MflI	RGATCY	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	138, 407
MnlI	CCTC	8 cut(s)	128, 245, 251, 260, 287, 317, 352, 481
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	2 cut(s)	257, 529
MspR9I	CCNGG	4 cut(s)	200, 209, 257, 284
MvaI	CCWGG	3 cut(s)	200, 209, 284
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	171, 403
NlaIV	GGNNCC	2 cut(s)	48, 232
PasI	CCCWGGG	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	63, 150, 222
Psp6I	CCWGG	3 cut(s)	198, 207, 282
PspGI	CCWGG	3 cut(s)	198, 207, 282
PspN4I	GGNNCC	2 cut(s)	48, 232
PspPI	GGNCC	2 cut(s)	46, 160
PsuI	RGATCY	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	404
SatI	GCNGC	3 cut(s)	62, 149, 221
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	2 cut(s)	46, 160
ScrFI	CCNGG	4 cut(s)	200, 209, 257, 284
SetI	ASST	8 cut(s)	99, 120, 201, 225, 243, 294, 306, 344
SexAI	ACCWGGT	1 cut(s)	198
SfaNI	GCATC	3 cut(s)	137, 236, 459
SinI	GGWCC	2 cut(s)	46, 160
SmiMI	CAYNNNNRTG	1 cut(s)	404
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	4 cut(s)	198, 207, 255, 282
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	4 cut(s)	314, 348, 465, 495
TscAI	CASTG	4 cut(s)	267, 351, 486, 500
TseI	GCWGC	3 cut(s)	61, 148, 220
TspDTI	ATGAA	2 cut(s)	287, 352
TspRI	CASTG	4 cut(s)	267, 351, 486, 500
VpaK11BI	GGWCC	2 cut(s)	46, 160
XagI	CCTNNNNNAGG	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.