Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008548

Physical Location & Seq

Genomic Coordinates Reverse (-)

1035517 .. 1038700

Gene Structure 3184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1016300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGACAATGCCGTCGGGGAATGTGGTTTTATCGGACAAAATGCAGTTTCCTAGTGGTGGTGGCGCCGCGGCCGTTGGAGGCGGCGAGATCCCCCAGCTCCCCCGTCAGTGGTTCCCGGATGAGCGTGATGGGTTCATCTCATGGTTGCGCGGAGAATTCGCGGCAGCTAATGCGATTATAGACTCCCTTTGCCACCATTTACGTGTAGTTGGTGAGCCAGGCGAGTACGACGGCGTTATCAGCTGTATTCAGCAGAGGAGGTGCAATTGGAATCCTGTGCTTCATATGCAGCAGTACTTTTCGGTTGCGGAGGTGATATATGCACTGCAACATGTTGCCTGGAGGAGGCAGCAGAGGCAATATGATCATGTAAAAGTGGGGGCCAAGGAGTATAAGAGATCCGGTTCCGGGTTTAACAAGGGCCAACATAGGGCTGAGCATTTCAAGGAAGGACATAATTTTAGTACAGAGGTTCATAGTTATGATGGGAATTCTTCGGGGCTTGTTGCTTCGGAGAAAGTTGAGCGGGGAAGCGAGGTAGCTGAGGAACTCAAGCCCGGTGGAGAGGTTGGGAAGTTGGATGGTAACGGTTTAGCAGCTGCTGGAGAGAAAACAGAACCTCAAGAAGATAGTAGATTAAGGAGTTCGGAGAATTCACAACTGACCATATATGGCAATTCAGAACCTGAAGTTGCGGTAGGAGATGGATGCACCTCAAGCTCCAAAGAGAATGAATCACATTCTATCCAAATTCAGAATGCGAAGCAGAACCTCTCCATTGTTCCTAAAACTTTTGTTGGCAACGAGTTATTAGATGGAAAGACGGTTAACGTGGTCGATGGACTGAAATTGTATGAAGGATTGCTTGGTGACACAGAAGTCTCCAAACTTGTTTCTTTGGCTAATGATTTAAGGGTTGCAGGGAAAAGAGGACAATTTCAAGGCGAGTTTAATAATCCTTTGTGTTTAGAAATAAGCAGAAGATATGAAAAACTTGTGGTTGATTCCAGTACTAAACATAAATCCGCCATGTGGTTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

348

Amino Acids

38.09

Weight (kDa)

5.92

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14710 AT1G14710
fragaria_vesca	FvH4_4g33050 FvH4_4g33050 FvH4_4g33050
malus_domestica	MD13G1016200.v1.1 MD13G1016300.v1.1 MD16G1013800.v1.1
prunus_persica	Prupe.1G337300_v2.0.a1
pyrus_communis	pycom13g01400 pycom16g01300
rosa_chinensis	RchiOBHm_Chr4g0442091
rosa_laevigata	RLG00000006041
rosa_multiflora	Rmu_co8051702.1_g000001 Rmu_co8386629.1_g000001 Rmu_sc0002501.1_g000005
rosa_roxburghii	Rroxscaffold_5G00383000
rosa_rugosa	Rorug04G0338800.1
rosa_samantha	Rh4AG390300 Rh4BG403900 Rh4CG418900 Rh4DG396900
rosa_wichuraiana	Rw4G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	10, 878
AccB1I	GGYRCC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	526
AccII	CGCG	3 cut(s)	68, 150, 161
AciI	CCGC	9 cut(s)	66, 68, 81, 150, 161, 308, 526, 695, 1026
AclWI	GGATC	2 cut(s)	82, 393
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	4 cut(s)	155, 490, 652, 750
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	4 cut(s)	227, 296, 466, 1012
AfiI	CCNNNNNNNGG	6 cut(s)	56, 108, 345, 408, 430, 1032
AflIII	ACRYGT	2 cut(s)	202, 331
AgsI	TTSAA	2 cut(s)	445, 941
AjnI	CCWGG	2 cut(s)	217, 338
AjuI	GAANNNNNNNTTGG	2 cut(s)	849, 881
AluBI	AGCT	6 cut(s)	97, 167, 243, 542, 599, 720
AluI	AGCT	6 cut(s)	97, 167, 243, 542, 599, 720
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	2 cut(s)	82, 393
AlwNI	CAGNNNCTG	2 cut(s)	602, 686
AoxI	GGCC	3 cut(s)	69, 381, 421
ApeKI	GCWGC	5 cut(s)	164, 289, 349, 596, 599
ApoI	RAATTY	4 cut(s)	155, 490, 652, 750
AspLEI	GCGC	2 cut(s)	65, 150
AspS9I	GGNCC	2 cut(s)	381, 421
AsuC2I	CCSGG	3 cut(s)	116, 409, 558
AsuHPI	GGTGA	3 cut(s)	224, 325, 881
BanI	GGYRCC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	5 cut(s)	176, 301, 361, 586, 608
BccI	CCATC	6 cut(s)	122, 479, 575, 698, 809, 833
BceAI	ACGGC	2 cut(s)	56, 247
BciT130I	CCWGG	2 cut(s)	219, 340
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	3 cut(s)	116, 409, 558
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	9 cut(s)	66, 69, 82, 162, 165, 290, 350, 597, 600
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	9 cut(s)	67, 70, 83, 163, 166, 291, 351, 598, 601
BmcAI	AGTACT	2 cut(s)	296, 1012
Bme1390I	CCNGG	5 cut(s)	116, 219, 340, 409, 558
BmgT120I	GGNCC	2 cut(s)	381, 421
BmiI	GGNNCC	4 cut(s)	64, 113, 382, 406
BmrFI	CCNGG	5 cut(s)	116, 219, 340, 409, 558
BmsI	GCATC	1 cut(s)	698
BpmI	CTGGAG	2 cut(s)	361, 624
Bpu10I	CCTNAGC	1 cut(s)	543
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	3 cut(s)	536, 606, 700
BpuMI	CCSGG	3 cut(s)	116, 409, 558
BsaAI	YACGTR	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	66, 384
BsaWI	WCCGGW	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 108, 345, 408, 430, 1032
Bse1I	ACTGG	1 cut(s)	1008
BseBI	CCWGG	2 cut(s)	219, 340
BseDI	CCNNGG	2 cut(s)	66, 384
BseGI	GGATG	3 cut(s)	124, 586, 713
BseLI	CCNNNNNNNGG	6 cut(s)	56, 108, 345, 408, 430, 1032
BseMII	CTCAG	2 cut(s)	426, 534
BseNI	ACTGG	1 cut(s)	1008
BseRI	GAGGAG	2 cut(s)	271, 358
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	5 cut(s)	176, 301, 361, 586, 608
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	3 cut(s)	68, 150, 161
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	71, 383, 423
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	4 cut(s)	116, 402, 408, 558
BslI	CCNNNNNNNGG	6 cut(s)	56, 108, 345, 408, 430, 1032
BsmAI	GTCTC	1 cut(s)	886
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	3 cut(s)	71, 383, 423
Bsp143I	GATC	3 cut(s)	87, 364, 398
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	9 cut(s)	66, 68, 81, 150, 161, 308, 526, 695, 1026
BspANI	GGCC	3 cut(s)	71, 383, 423
BspCNI	CTCAG	2 cut(s)	427, 535
BspFNI	CGCG	3 cut(s)	68, 150, 161
BspHI	TCATGA	1 cut(s)	1040
BspLI	GGNNCC	4 cut(s)	64, 113, 382, 406
BspPI	GGATC	2 cut(s)	82, 393
BspT107I	GGYRCC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	1008
BssECI	CCNNGG	2 cut(s)	66, 384
BssMI	GATC	3 cut(s)	87, 364, 398
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	219, 340
Bst4CI	ACNGT	2 cut(s)	590, 826
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	435, 543
BstDSI	CCRYGG	1 cut(s)	66
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	3 cut(s)	124, 586, 713
BstFNI	CGCG	3 cut(s)	68, 150, 161
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 150
BstKTI	GATC	3 cut(s)	90, 367, 401
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	3 cut(s)	87, 364, 398
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 240, 286, 355, 717
BstNI	CCWGG	2 cut(s)	219, 340
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	5 cut(s)	114, 217, 338, 407, 556
BstUI	CGCG	3 cut(s)	68, 150, 161
BstV1I	GCAGC	5 cut(s)	176, 301, 361, 586, 608
BstX2I	RGATCY	2 cut(s)	87, 398
BstYI	RGATCY	2 cut(s)	87, 398
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	71, 383, 423
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	124, 586, 713
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	2 cut(s)	113, 323
CaiI	CAGNNNCTG	2 cut(s)	602, 686
CciI	TCATGA	1 cut(s)	1040
CfoI	GCGC	2 cut(s)	65, 150
Cfr13I	GGNCC	2 cut(s)	381, 421
Cfr42I	CCGCGG	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	226, 295, 465, 1011
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	5 cut(s)	141, 332, 368, 1030, 1041
CviQI	GTAC	4 cut(s)	226, 295, 465, 1011
DdeI	CTNAG	2 cut(s)	435, 543
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	3 cut(s)	89, 366, 400
DpnII	GATC	3 cut(s)	87, 364, 398
DrdI	GACNNNNNNGTC	2 cut(s)	10, 878
DseDI	GACNNNNNNGTC	2 cut(s)	10, 878
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	1015
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	384
Eco52I	CGGCCG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	708
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoRI	GAATTC	3 cut(s)	155, 490, 652
EcoRII	CCWGG	2 cut(s)	217, 338
EcoT14I	CCWWGG	1 cut(s)	384
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	5 cut(s)	144, 335, 371, 1033, 1044
FalI	AAGNNNNNCTT	2 cut(s)	849, 881
FatI	CATG	5 cut(s)	140, 331, 367, 1029, 1040
FauI	CCCGC	1 cut(s)	519
FauNDI	CATATG	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	9 cut(s)	66, 69, 82, 162, 165, 290, 350, 597, 600
FokI	GGATG	3 cut(s)	131, 593, 720
Fsp4HI	GCNGC	9 cut(s)	66, 69, 82, 162, 165, 290, 350, 597, 600
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	2 cut(s)	64, 149
GluI	GCNGC	9 cut(s)	66, 69, 82, 162, 165, 290, 350, 597, 600
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	2 cut(s)	361, 624
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	3 cut(s)	71, 383, 423
HapII	CCGG	4 cut(s)	116, 402, 408, 558
HhaI	GCGC	2 cut(s)	65, 150
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	144, 335, 371, 1033, 1044
Hin6I	GCGC	2 cut(s)	63, 148
HinP1I	GCGC	2 cut(s)	63, 148
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HinfI	GANTC	4 cut(s)	182, 271, 734, 1004
HpaI	GTTAAC	1 cut(s)	829
HpaII	CCGG	4 cut(s)	116, 402, 408, 558
HphI	GGTGA	3 cut(s)	224, 325, 881
Hpy166II	GTNNAC	1 cut(s)	829
Hpy188I	TCNGA	5 cut(s)	34, 514, 649, 682, 756
Hpy188III	TCNNGA	2 cut(s)	623, 1041
Hpy8I	GTNNAC	1 cut(s)	829
Hpy99I	CGWCG	2 cut(s)	16, 233
HpyAV	CCTTC	2 cut(s)	443, 851
HpyCH4III	ACNGT	2 cut(s)	590, 826
HpyCH4IV	ACGT	2 cut(s)	202, 831
HpyCH4V	TGCA	7 cut(s)	43, 264, 289, 323, 328, 711, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 240, 286, 355, 717
HpyF3I	CTNAG	2 cut(s)	435, 543
HpySE526I	ACGT	2 cut(s)	202, 831
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	144, 335, 371, 1033, 1044
HspAI	GCGC	2 cut(s)	63, 148
KasI	GGCGCC	1 cut(s)	62
Ksp22I	TGATCA	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	829
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	87, 364, 398
LmnI	GCTCC	2 cut(s)	102, 725
Lsp1109I	GCAGC	5 cut(s)	176, 301, 361, 586, 608
LweI	GCATC	1 cut(s)	698
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	2 cut(s)	202, 831
MaeIII	GTNAC	2 cut(s)	584, 869
MalI	GATC	3 cut(s)	89, 366, 400
MbiI	CCGCTC	1 cut(s)	526
MboI	GATC	3 cut(s)	87, 364, 398
MboII	GAAGA	3 cut(s)	486, 638, 993
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	2 cut(s)	87, 398
MluCI	AATT	9 cut(s)	155, 265, 457, 490, 652, 676, 750, 848, 935
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	2 cut(s)	55, 558
MseI	TTAA	5 cut(s)	414, 638, 828, 911, 951
MslI	CAYNNNNRTG	2 cut(s)	201, 480
MspA1I	CMGCKG	3 cut(s)	68, 243, 599
MspI	CCGG	4 cut(s)	116, 402, 408, 558
MspR9I	CCNGG	5 cut(s)	116, 219, 340, 409, 558
MunI	CAATTG	1 cut(s)	265
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	2 cut(s)	219, 340
MvnI	CGCG	3 cut(s)	68, 150, 161
MwoI	GCNNNNNNNGC	5 cut(s)	170, 240, 286, 355, 717
NarI	GGCGCC	1 cut(s)	63
NciI	CCSGG	3 cut(s)	116, 409, 558
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	3 cut(s)	87, 364, 398
NlaIII	CATG	5 cut(s)	144, 335, 371, 1033, 1044
NlaIV	GGNNCC	4 cut(s)	64, 113, 382, 406
NmuCI	GTSAC	1 cut(s)	869
NspI	RCATGY	1 cut(s)	335
PagI	TCATGA	1 cut(s)	1040
PciI	ACATGT	1 cut(s)	331
PctI	GAATGC	1 cut(s)	763
PfeI	GAWTC	3 cut(s)	271, 734, 1004
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	9 cut(s)	67, 70, 83, 163, 166, 291, 351, 598, 601
PleI	GAGTC	1 cut(s)	176
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	203
PscI	ACATGT	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	217, 338
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	2 cut(s)	217, 338
PspN4I	GGNNCC	4 cut(s)	64, 113, 382, 406
PspPI	GGNCC	2 cut(s)	381, 421
PstNI	CAGNNNCTG	2 cut(s)	602, 686
PsuI	RGATCY	2 cut(s)	87, 398
PvuII	CAGCTG	2 cut(s)	243, 599
RsaI	GTAC	4 cut(s)	227, 296, 466, 1012
RsaNI	GTAC	4 cut(s)	226, 295, 465, 1011
RseI	CAYNNNNRTG	2 cut(s)	201, 480
SacII	CCGCGG	1 cut(s)	69
SaqAI	TTAA	5 cut(s)	414, 638, 828, 911, 951
SatI	GCNGC	9 cut(s)	66, 69, 82, 162, 165, 290, 350, 597, 600
Sau3AI	GATC	3 cut(s)	87, 364, 398
Sau96I	GGNCC	2 cut(s)	381, 421
ScaI	AGTACT	2 cut(s)	296, 1012
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	5 cut(s)	116, 219, 340, 409, 558
SfaNI	GCATC	1 cut(s)	698
SfoI	GGCGCC	1 cut(s)	64
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SmiMI	CAYNNNNRTG	2 cut(s)	201, 480
SmlI	CTYRAG	3 cut(s)	551, 621, 715
SmoI	CTYRAG	3 cut(s)	551, 621, 715
Sse9I	AATT	9 cut(s)	155, 265, 457, 490, 652, 676, 750, 848, 935
SsiI	CCGC	9 cut(s)	66, 68, 81, 150, 161, 308, 526, 695, 1026
SspDI	GGCGCC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	5 cut(s)	114, 217, 338, 407, 556
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	590, 826
TaiI	ACGT	2 cut(s)	205, 834
TaqI	TCGA	1 cut(s)	837
TasI	AATT	9 cut(s)	155, 265, 457, 490, 652, 676, 750, 848, 935
TatI	WGTACW	3 cut(s)	294, 464, 1010
TauI	GCSGC	4 cut(s)	68, 71, 84, 164
TfiI	GAWTC	3 cut(s)	271, 734, 1004
Tru1I	TTAA	5 cut(s)	414, 638, 828, 911, 951
Tru9I	TTAA	5 cut(s)	414, 638, 828, 911, 951
TscAI	CASTG	2 cut(s)	113, 330
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	5 cut(s)	164, 289, 349, 596, 599
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	6 cut(s)	124, 272, 464, 747, 870, 1002
TspRI	CASTG	2 cut(s)	113, 330
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	4 cut(s)	155, 490, 652, 750
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	1 cut(s)	51
ZrmI	AGTACT	2 cut(s)	296, 1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.