AT1G14730

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016051
Physical Location & Seq
Forward (+)
5073031 .. 5074798
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14730.1

Sequence Viewer

Length: 675 bp
ATGAATCTCTCAGGGGATCGAACAACTCTAAAGCGTCACTCGTCGCTTTCAACACTTGTGGCTCATTTCTTTGGCATCTTAGCTGTTGTTCTGATGCTAATTTGGCTTCTCCACTACCGTGAAGGCATCGAGTATGGCTCCGACAACCCCCTTAAGGTTTTAAATGTGCACCCATTTCTCATGTACTGTGGATTTCTCTTCCTCGTGGGCCAAGCAATGATGACTTACAAAACGGCGTACGCGTCGCACCAAGTTCAGAAAATGGTTCACGGTGGGCTTCACTTAATAGGCTTAGTTCTAGGTATTGTCGGAATCTGCGCCGCCTTTAGATTCCACGACAAAGTAAACCTAAAAGACATGGTCTCTCTTCACTCCTGGATCGGTCTCACCACTTTCATCCTCCTCGGCGTCCAGTGGCTATTCGGTGCGTTCACATTCTTAGCGCCGCAATCATCGTCGGGAACAAGGACGAGGATGATGCCGTGGCACGTCTTAGGTGGTCGGGCTCTACTTTATATGGGTATTGTCGCAGCACTGACCGGACTCATGCAGAGAGCTACGATGCTTGGTCAGAGCACAAACGCTGAGTCACGTCTAATTAACTTCCTCGGGTTAGCCATTCTACTCTTTGGCGTTTCCGTCGACTTCTCCGTCGCCCTTGGCCGTTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

224

Amino Acids

24.78

Weight (kDa)

9.82

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 56 - 187 5.1e-38 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14730
malus_domestica MD13G1016600.v1.1 MD16G1014500.v1.1
prunus_persica Prupe.1G336800_v2.0.a1
pyrus_communis pycom16g01330
rosa_chinensis RchiOBHm_Chr4g0442131
rosa_laevigata RLG00000006038
rosa_multiflora Rmu_sc0010284.1_g000013
rosa_roxburghii Rroxscaffold_5G00383040
rosa_rugosa Rorug04G0339200
rosa_samantha Rh4AG390600 Rh4BG404200 Rh4CG419200 Rh4DG397200
rosa_wichuraiana Rw4G033760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 650
AccI GTMKAC 1 cut(s) 642
AccII CGCG 1 cut(s) 242
AciI CCGC 2 cut(s) 321, 446
AclWI GGATC 2 cut(s) 24, 386
AcoI YGGCCR 1 cut(s) 661
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 2 cut(s) 185, 239
AfiI CCNNNNNNNGG 1 cut(s) 154
AflII CTTAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 1 cut(s) 51
AjiI CACGTC 2 cut(s) 490, 593
AjnI CCWGG 1 cut(s) 374
AleI CACNNNNGTG 1 cut(s) 117
AluBI AGCT 2 cut(s) 83, 557
AluI AGCT 2 cut(s) 83, 557
Alw21I GWGCWC 2 cut(s) 171, 578
Alw26I GTCTC 2 cut(s) 367, 389
Alw44I GTGCAC 1 cut(s) 167
AlwI GGATC 2 cut(s) 24, 386
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 2 cut(s) 208, 661
ApaLI GTGCAC 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 530
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AspLEI GCGC 2 cut(s) 320, 445
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 508
BauI CACGAG 1 cut(s) 203
Bbv12I GWGCWC 2 cut(s) 171, 578
BbvI GCAGC 1 cut(s) 542
BceAI ACGGC 3 cut(s) 249, 466, 648
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 367, 389
BfaI CTAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 446
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 3 cut(s) 321, 446, 531
BlsI GCNGC 3 cut(s) 322, 447, 532
Bme1390I CCNGG 1 cut(s) 376
BmeT110I CYCGRG 1 cut(s) 608
BmgBI CACGTC 2 cut(s) 490, 593
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 5 cut(s) 84, 84, 135, 468, 552
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BsaHI GRCGYC 1 cut(s) 408
BsaI GGTCTC 2 cut(s) 367, 389
BsaJI CCNNGG 4 cut(s) 403, 482, 607, 658
BsaWI WCCGGW 1 cut(s) 539
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 4 cut(s) 403, 482, 607, 658
BseGI GGATG 2 cut(s) 396, 480
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 24, 576
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 1 cut(s) 542
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 2 cut(s) 210, 663
BsiHKAI GWGCWC 2 cut(s) 171, 578
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 1 cut(s) 540
BsiWI CGTACG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 367, 389
BsnI GGCC 2 cut(s) 210, 663
Bso31I GGTCTC 2 cut(s) 367, 389
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 3 cut(s) 171, 508, 578
Bsp143I GATC 2 cut(s) 16, 378
BspACI CCGC 2 cut(s) 321, 446
BspANI GGCC 2 cut(s) 210, 663
BspCNI CTCAG 2 cut(s) 23, 577
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 2 cut(s) 24, 386
BspTI CTTAAG 1 cut(s) 152
BspTNI GGTCTC 2 cut(s) 367, 389
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 4 cut(s) 403, 482, 607, 658
BssMI GATC 2 cut(s) 16, 378
BssNI GRCGYC 1 cut(s) 408
BssSI CACGAG 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 658
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 3 cut(s) 119, 188, 272
Bst6I CTCTTC 2 cut(s) 203, 372
BstACI GRCGYC 1 cut(s) 408
BstAFI CTTAAG 1 cut(s) 152
BstDEI CTNAG 6 cut(s) 10, 79, 292, 439, 493, 585
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 2 cut(s) 396, 480
BstFNI CGCG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 2 cut(s) 320, 445
BstKTI GATC 2 cut(s) 19, 381
BstMAI GTCTC 2 cut(s) 367, 389
BstMBI GATC 2 cut(s) 16, 378
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 374
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 542
BsuRI GGCC 2 cut(s) 210, 663
BtgI CCRYGG 1 cut(s) 482
BtrI CACGTC 2 cut(s) 490, 593
BtsCI GGATG 2 cut(s) 396, 480
BtsIMutI CAGTG 2 cut(s) 419, 533
CfoI GCGC 2 cut(s) 320, 445
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 3 cut(s) 23, 231, 397
Csp6I GTAC 2 cut(s) 184, 238
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 3 cut(s) 181, 358, 547
CviQI GTAC 2 cut(s) 184, 238
DdeI CTNAG 6 cut(s) 10, 79, 292, 439, 493, 585
DpnI GATC 2 cut(s) 18, 380
DpnII GATC 2 cut(s) 16, 378
DraI TTTAAA 1 cut(s) 162
DrdI GACNNNNNNGTC 1 cut(s) 650
DseDI GACNNNNNNGTC 1 cut(s) 650
EaeI YGGCCR 1 cut(s) 661
Eam1104I CTCTTC 2 cut(s) 203, 372
EarI CTCTTC 2 cut(s) 203, 372
Eco130I CCWWGG 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 508
Eco31I GGTCTC 2 cut(s) 367, 389
Eco88I CYCGRG 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 3 cut(s) 184, 361, 550
FaiI YATR 6 cut(s) 135, 182, 359, 516, 518, 548
FatI CATG 3 cut(s) 180, 357, 546
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 3 cut(s) 321, 446, 531
FokI GGATG 2 cut(s) 383, 487
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 3 cut(s) 321, 446, 531
FspBI CTAG 1 cut(s) 299
GlaI GCGC 2 cut(s) 319, 444
GluI GCNGC 3 cut(s) 321, 446, 531
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 2 cut(s) 210, 663
HapII CCGG 1 cut(s) 540
HgaI GACGC 3 cut(s) 23, 231, 397
HhaI GCGC 2 cut(s) 320, 445
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 3 cut(s) 184, 361, 550
Hin6I GCGC 2 cut(s) 318, 443
HinP1I GCGC 2 cut(s) 318, 443
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 5 cut(s) 4, 312, 330, 543, 587
HpaII CCGG 1 cut(s) 540
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 5 cut(s) 169, 268, 346, 432, 643
Hpy188I TCNGA 5 cut(s) 93, 142, 258, 311, 573
Hpy188III TCNNGA 1 cut(s) 459
Hpy8I GTNNAC 5 cut(s) 169, 268, 346, 432, 643
Hpy99I CGWCG 5 cut(s) 46, 247, 460, 644, 656
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 3 cut(s) 119, 188, 272
HpyCH4IV ACGT 2 cut(s) 489, 592
HpyCH4V TGCA 2 cut(s) 169, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 6 cut(s) 10, 79, 292, 439, 493, 585
HpySE526I ACGT 2 cut(s) 489, 592
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 3 cut(s) 184, 361, 550
HspAI GCGC 2 cut(s) 318, 443
Kzo9I GATC 2 cut(s) 16, 378
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 4 cut(s) 361, 388, 425, 553
Lsp1109I GCAGC 1 cut(s) 542
LweI GCATC 5 cut(s) 84, 84, 135, 468, 552
MaeI CTAG 1 cut(s) 299
MaeII ACGT 2 cut(s) 489, 592
MaeIII GTNAC 3 cut(s) 35, 588, 665
MalI GATC 2 cut(s) 18, 380
MboI GATC 2 cut(s) 16, 378
MboII GAAGA 2 cut(s) 190, 359
MhlI GDGCHC 3 cut(s) 171, 508, 578
MluCI AATT 2 cut(s) 99, 597
MluI ACGCGT 1 cut(s) 240
MlyI GAGTC 2 cut(s) 537, 596
MmeI TCCRAC 2 cut(s) 165, 289
MnlI CCTC 5 cut(s) 212, 410, 413, 465, 617
MseI TTAA 4 cut(s) 153, 161, 284, 600
MslI CAYNNNNRTG 1 cut(s) 117
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 2 cut(s) 16, 378
NlaIII CATG 3 cut(s) 184, 361, 550
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 35, 588
OliI CACNNNNGTG 1 cut(s) 117
PcsI WCGNNNNNNNCGW 2 cut(s) 239, 648
PfeI GAWTC 3 cut(s) 4, 312, 330
Pfl23II CGTACG 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 374
PkrI GCNGC 3 cut(s) 322, 447, 532
PleI GAGTC 2 cut(s) 537, 595
PpsI GAGTC 2 cut(s) 537, 595
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspLI CGTACG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 2 cut(s) 185, 239
RsaNI GTAC 2 cut(s) 184, 238
RseI CAYNNNNRTG 1 cut(s) 117
SalI GTCGAC 1 cut(s) 641
SaqAI TTAA 4 cut(s) 153, 161, 284, 600
SatI GCNGC 3 cut(s) 321, 446, 531
Sau3AI GATC 2 cut(s) 16, 378
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 2 cut(s) 537, 596
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 3 cut(s) 171, 508, 578
SetI ASST 8 cut(s) 85, 159, 304, 351, 492, 499, 559, 595
SfaNI GCATC 5 cut(s) 84, 84, 135, 468, 552
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 99, 597
SsiI CCGC 2 cut(s) 321, 446
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 3 cut(s) 119, 188, 272
TaiI ACGT 2 cut(s) 492, 595
TaqI TCGA 3 cut(s) 19, 129, 642
TaqII GACCGA 1 cut(s) 371
TasI AATT 2 cut(s) 99, 597
TatI WGTACW 1 cut(s) 183
TauI GCSGC 2 cut(s) 323, 448
TfiI GAWTC 3 cut(s) 4, 312, 330
Tru1I TTAA 4 cut(s) 153, 161, 284, 600
Tru9I TTAA 4 cut(s) 153, 161, 284, 600
TscAI CASTG 2 cut(s) 419, 540
TseFI GTSAC 2 cut(s) 35, 588
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 2 cut(s) 35, 588
TspDTI ATGAA 2 cut(s) 17, 385
TspGWI ACGGA 2 cut(s) 628, 640
TspRI CASTG 2 cut(s) 419, 540
Tth111I GACNNNGTC 1 cut(s) 359
Vha464I CTTAAG 1 cut(s) 152
VneI GTGCAC 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 642
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.