AT1G14820

SEC14 cytosolic factor family protein phosphoglyceride transfer family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013330
Physical Location & Seq
Reverse (-)
5104975 .. 5107107
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14820.2

Sequence Viewer

Length: 720 bp
ATGGTTTTTGTTGTTGTTGTTTCCTCTGAAAAGGGATATGACAAACCAACATTGATGAGGTTCCTGGTGGCAAGATCAATGGACCCAGTCAAGGCAGCAAAGATGTTTGTAGATTGGCAAAAATGGAGAGCCTCCATGGTTCCTCCAACTGGATTCATCCCTGAGTCAGAAGTGCAGGATGAATTGGAATTCAGAAAGGTCTGTCTTCAGGGTCCGACCAAATCCGGACACCCATTGGTGCTTGTCATAACCTCTAAGCATTTTGCTTCTAAGGATCCAGCTAACTTCAAGAAGTTTGTTGTTTATGCGCTAGACAAAACAATCGCAAGTGGCAACAATGGCAAAGAAGTTGGAGGTGAGAAATTAGTAGCCGTTATTGATCTGGCAAACATTACATACAAGAACCTTGATGCTCGTGGATTGATCACTGGCTTTCAATTCTTACAATCTTACTACCCGGAACGCCTTGCAAAATGCTACATTTTGCATATGCCCGGATTCTTCGTGACCGTTTGGAAATTCGTCTGCCGTTTTCTAGAGAAAGCAACTCAGGAAAAGATTGTGATAGTTACGGATGGAGAAGAACAGAGAAAATTCGAGGAGGAGATCGGAGCAGATGCTTTACCGGAAGAGTACGGTGGCCGAGCTAAGCTCACAGCAATCCAAGATGTTCTTCTTCCTCAGGCTGCTCCAGTAACTCTAACAAACAATAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

239

Amino Acids

26.8

Weight (kDa)

8.31

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 66 - 214 5.5e-26 CRAL/TRIO domain
CRAL_TRIO_2 PF13716 76 - 214 1e-08 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14820 AT1G14820 AT1G14820
fragaria_vesca FvH4_4g33460 FvH4_4g33460
malus_domestica MD13G1019700.v1.1 MD16G1017800.v1.1
prunus_persica Prupe.1G334300_v2.0.a1
pyrus_communis pycom13g01670
rosa_chinensis RchiOBHm_Chr4g0442771
rosa_laevigata RLG00000005985
rosa_roxburghii Rroxscaffold_5G00383550
rosa_rugosa Rorug04G0342900
rosa_samantha Rh4AG395500 Rh4BG408200 Rh4CG424000 Rh4DG402400
rosa_wichuraiana Rw4G034180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 224
AclWI GGATC 2 cut(s) 269, 282
AcoI YGGCCR 1 cut(s) 640
AcsI RAATTY 3 cut(s) 188, 518, 593
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 2 cut(s) 91, 149
AgsI TTSAA 2 cut(s) 289, 437
AjnI CCWGG 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 3 cut(s) 281, 647, 652
AluI AGCT 3 cut(s) 281, 647, 652
AlwI GGATC 2 cut(s) 269, 282
Aor13HI TCCGGA 1 cut(s) 224
AoxI GGCC 1 cut(s) 640
ApeKI GCWGC 2 cut(s) 95, 686
ApoI RAATTY 3 cut(s) 188, 518, 593
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 82, 212
AsuC2I CCSGG 2 cut(s) 458, 495
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 2 cut(s) 82, 212
AxyI CCTNAGG 1 cut(s) 681
BamHI GGATCC 1 cut(s) 274
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 107, 673
BccI CCATC 1 cut(s) 569
BceAI ACGGC 2 cut(s) 356, 513
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 1 cut(s) 423
BcnI CCSGG 2 cut(s) 458, 495
BfaI CTAG 2 cut(s) 311, 536
BisI GCNGC 2 cut(s) 96, 687
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 2 cut(s) 97, 688
Bme1390I CCNGG 3 cut(s) 65, 458, 495
Bme18I GGWCC 2 cut(s) 82, 212
BmgT120I GGNCC 2 cut(s) 82, 212
BmiI GGNNCC 5 cut(s) 62, 84, 141, 213, 276
BmrFI CCNGG 3 cut(s) 65, 458, 495
BmrI ACTGGG 1 cut(s) 80
BmsI GCATC 2 cut(s) 400, 607
BmuI ACTGGG 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 636, 668
BpmI CTGGAG 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 648
BpuMI CCSGG 2 cut(s) 458, 495
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 224, 625
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 149
Bse1I ACTGG 4 cut(s) 86, 154, 433, 692
Bse21I CCTNAGG 1 cut(s) 681
BseAI TCCGGA 1 cut(s) 224
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 3 cut(s) 156, 184, 580
BseLI CCNNNNNNNGG 2 cut(s) 91, 149
BseMII CTCAG 3 cut(s) 153, 563, 695
BseNI ACTGG 4 cut(s) 86, 154, 433, 692
BseRI GAGGAG 2 cut(s) 614, 617
BseXI GCAGC 2 cut(s) 107, 673
BsgI GTGCAG 1 cut(s) 194
BshFI GGCC 1 cut(s) 642
BsiSI CCGG 4 cut(s) 225, 458, 495, 626
BslI CCNNNNNNNGG 2 cut(s) 91, 149
BsnI GGCC 1 cut(s) 642
Bsp13I TCCGGA 1 cut(s) 224
Bsp143I GATC 5 cut(s) 74, 274, 379, 423, 606
Bsp1720I GCTNAGC 1 cut(s) 648
Bsp19I CCATGG 1 cut(s) 135
BspANI GGCC 1 cut(s) 642
BspCNI CTCAG 3 cut(s) 154, 562, 694
BspEI TCCGGA 1 cut(s) 224
BspLI GGNNCC 5 cut(s) 62, 84, 141, 213, 276
BspPI GGATC 2 cut(s) 269, 282
BsrI ACTGG 4 cut(s) 86, 154, 433, 692
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 5 cut(s) 74, 274, 379, 423, 606
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 511, 638
Bst6I CTCTTC 1 cut(s) 624
BstDEI CTNAG 6 cut(s) 162, 255, 270, 549, 648, 681
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 3 cut(s) 156, 184, 580
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 5 cut(s) 77, 277, 382, 426, 609
BstMBI GATC 5 cut(s) 74, 274, 379, 423, 606
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 3 cut(s) 63, 456, 493
BstV1I GCAGC 2 cut(s) 107, 673
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 681
BsuRI GGCC 1 cut(s) 642
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 3 cut(s) 156, 184, 580
BtsIMutI CAGTG 1 cut(s) 426
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 82, 212
Csp6I GTAC 1 cut(s) 634
CviAII CATG 1 cut(s) 136
CviJI RGCY 8 cut(s) 131, 281, 371, 432, 642, 647, 652, 686
CviKI_1 RGCY 8 cut(s) 131, 281, 371, 432, 642, 647, 652, 686
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 6 cut(s) 162, 255, 270, 549, 648, 681
DpnI GATC 5 cut(s) 76, 276, 381, 425, 608
DpnII GATC 5 cut(s) 74, 274, 379, 423, 606
EaeI YGGCCR 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 82, 212
Eco57I CTGAAG 1 cut(s) 191
Eco81I CCTNAGG 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 139
FaiI YATR 7 cut(s) 39, 137, 248, 306, 397, 489, 491
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FatI CATG 1 cut(s) 135
FauNDI CATATG 1 cut(s) 489
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 2 cut(s) 96, 687
FokI GGATG 3 cut(s) 143, 191, 587
Fsp4HI GCNGC 2 cut(s) 96, 687
FspBI CTAG 2 cut(s) 311, 536
GlaI GCGC 1 cut(s) 309
GluI GCNGC 2 cut(s) 96, 687
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 1 cut(s) 642
HapII CCGG 4 cut(s) 225, 458, 495, 626
HhaI GCGC 1 cut(s) 310
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 3 cut(s) 153, 164, 498
HpaII CCGG 4 cut(s) 225, 458, 495, 626
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 5 cut(s) 28, 169, 194, 216, 611
Hpy188III TCNNGA 5 cut(s) 225, 289, 505, 536, 551
HpyCH4III ACNGT 2 cut(s) 511, 638
HpyCH4V TGCA 3 cut(s) 175, 470, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 6 cut(s) 162, 255, 270, 549, 648, 681
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 308
Kpn2I TCCGGA 1 cut(s) 224
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 5 cut(s) 74, 274, 379, 423, 606
LmnI GCTCC 2 cut(s) 611, 694
Lsp1109I GCAGC 2 cut(s) 107, 673
LweI GCATC 2 cut(s) 400, 607
MaeI CTAG 2 cut(s) 311, 536
MaeIII GTNAC 3 cut(s) 505, 568, 694
MalI GATC 5 cut(s) 76, 276, 381, 425, 608
MboI GATC 5 cut(s) 74, 274, 379, 423, 606
MboII GAAGA 6 cut(s) 197, 493, 593, 641, 665, 668
MflI RGATCY 1 cut(s) 274
MluCI AATT 6 cut(s) 182, 188, 362, 437, 518, 593
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 3 cut(s) 170, 239, 331
MnlI CCTC 9 cut(s) 34, 51, 142, 153, 262, 347, 592, 595, 690
MroI TCCGGA 1 cut(s) 224
MspI CCGG 4 cut(s) 225, 458, 495, 626
MspR9I CCNGG 3 cut(s) 65, 458, 495
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 339
NciI CCSGG 2 cut(s) 458, 495
NcoI CCATGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 489
NdeII GATC 5 cut(s) 74, 274, 379, 423, 606
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 5 cut(s) 62, 84, 141, 213, 276
NmeAIII GCCGAG 1 cut(s) 668
NmuCI GTSAC 1 cut(s) 505
PfeI GAWTC 2 cut(s) 153, 498
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 97, 688
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 5 cut(s) 62, 84, 141, 213, 276
PspPI GGNCC 2 cut(s) 82, 212
PsuI RGATCY 1 cut(s) 274
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
SatI GCNGC 2 cut(s) 96, 687
Sau3AI GATC 5 cut(s) 74, 274, 379, 423, 606
Sau96I GGNCC 2 cut(s) 82, 212
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 3 cut(s) 65, 458, 495
SetI ASST 8 cut(s) 62, 201, 254, 283, 358, 408, 649, 654
SfaNI GCATC 2 cut(s) 400, 607
SinI GGWCC 2 cut(s) 82, 212
Sse9I AATT 6 cut(s) 182, 188, 362, 437, 518, 593
SspMI CTAG 2 cut(s) 311, 536
StyD4I CCNGG 3 cut(s) 63, 456, 493
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 511, 638
TaqI TCGA 1 cut(s) 597
TasI AATT 6 cut(s) 182, 188, 362, 437, 518, 593
TfiI GAWTC 2 cut(s) 153, 498
TscAI CASTG 1 cut(s) 433
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 95, 686
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 145, 195
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 1 cut(s) 433
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 82, 212
XapI RAATTY 3 cut(s) 188, 518, 593
XbaI TCTAGA 1 cut(s) 535
XspI CTAG 2 cut(s) 311, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.