Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013330

Physical Location & Seq

Genomic Coordinates Reverse (-)

31692253 .. 31695362

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33460.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGGAAAGCCAAGAAACTGCACTGACCCAGATGAGAACATCAGTTCAGAAGCTTGGGTCTTCCACTGAGTTTGGAGACCCAACACTGATGAGGTTCTTGATTGCAAGATCAATGGACCCGGAGAAGGCAGCAAAGATGTTTGTGCAGTGGCGGAAATGGAGGGCTTCGTTTGTTCCCAATGGGTTCATTTCGGATTCTGAAGTTAAGGATCAATTGGAAGACAGAAAGATTTACTTGCAGGATTTGTGTAATGGATGTCCTGTGATGATTATTAAGGCAAGCAAGCATTATCCTGCCAAGGACCAACTCCAATTCAAGAAATTTGTGGTTCATCTGCTTGACAAAGTTATTGCAAGCTCTTTCAGAGGAAGAGAAATCGGGAACGAAAAGTTGATTGGCATTCTTGATTTGCAACAAATTTCCTATAAAAATGTTGATGCACGTGGATTAATAACTGGATTTCAATTTCTACAGGCTTACTACCCTGAAAGGTTAGGAAAGCTCTTCATTCTAAACATGCCAGGCTTTTTTGTAAGTGTCTGGAGGATGGTTTCTCGCTTTCTTGAGAAGGCAACTGCAGAAAAGGTTGTAATAGTGAGCAATGAGAATGAAAAGAGAGAGTTCATAAGGGAAATAGGCGAGGAAGTCTTGCCGGAAGAGTATGGTGGTCGAGCAAAGCTTGTAGCTATTCAAGATGTTGAACTGACCCCGGTAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

242

Amino Acids

27.72

Weight (kDa)

6.78

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	86 - 225	1.2e-26	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	87 - 224	5.8e-07	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14820 AT1G14820 AT1G14820
fragaria_vesca	FvH4_4g33460 FvH4_4g33460
malus_domestica	MD13G1019700.v1.1 MD16G1017800.v1.1
prunus_persica	Prupe.1G334300_v2.0.a1
pyrus_communis	pycom13g01670
rosa_chinensis	RchiOBHm_Chr4g0442771
rosa_laevigata	RLG00000005985
rosa_roxburghii	Rroxscaffold_5G00383550
rosa_rugosa	Rorug04G0342900
rosa_samantha	Rh4AG395500 Rh4BG408200 Rh4CG424000 Rh4DG402400
rosa_wichuraiana	Rw4G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	323, 420
AcuI	CTGAAG	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	127, 718
AgsI	TTSAA	4 cut(s)	319, 467, 695, 704
AjnI	CCWGG	1 cut(s)	523
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	5 cut(s)	55, 360, 505, 682, 689
AluI	AGCT	5 cut(s)	55, 360, 505, 682, 689
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	323, 420
AseI	ATTAAT	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	118, 304
AsuC2I	CCSGG	2 cut(s)	122, 713
AvaII	GGWCC	2 cut(s)	118, 304
BbrPI	CACGTG	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	54, 228
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	525
BcnI	CCSGG	2 cut(s)	122, 713
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	473, 579
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	3 cut(s)	122, 525, 713
Bme18I	GGWCC	2 cut(s)	118, 304
BmgT120I	GGNCC	2 cut(s)	118, 304
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	3 cut(s)	122, 525, 713
BmsI	GCATC	1 cut(s)	430
BpiI	GAAGAC	2 cut(s)	54, 228
BpmI	CTGGAG	1 cut(s)	565
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	2 cut(s)	122, 713
BsaAI	YACGTR	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	300, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 718
Bse1I	ACTGG	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	300, 711
BseGI	GGATG	2 cut(s)	263, 555
BseLI	CCNNNNNNNGG	2 cut(s)	127, 718
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	143
BsgI	GTGCAG	2 cut(s)	6, 167
BsiSI	CCGG	3 cut(s)	122, 656, 713
BslI	CCNNNNNNNGG	2 cut(s)	127, 718
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	402
Bso31I	GGTCTC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	110, 211
BspACI	CCGC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	583
BspPI	GGATC	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	300, 711
BssMI	GATC	2 cut(s)	110, 211
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	525
Bst6I	CTCTTC	3 cut(s)	367, 512, 654
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	283, 287, 358
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	263, 555
BstKTI	GATC	2 cut(s)	113, 214
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	110, 211
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	3 cut(s)	120, 523, 711
BstSFI	CTRYAG	2 cut(s)	473, 579
BstV1I	GCAGC	1 cut(s)	143
BstV2I	GAAGAC	2 cut(s)	54, 228
BtsCI	GGATG	2 cut(s)	263, 555
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	4 cut(s)	23, 66, 86, 155
Cac8I	GCNNGC	3 cut(s)	283, 287, 358
Cfr13I	GGNCC	2 cut(s)	118, 304
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	1 cut(s)	520
CviJI	RGCY	9 cut(s)	12, 55, 167, 360, 479, 505, 528, 682, 689
CviKI_1	RGCY	9 cut(s)	12, 55, 167, 360, 479, 505, 528, 682, 689
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	112, 213
DpnII	GATC	2 cut(s)	110, 211
Eam1104I	CTCTTC	3 cut(s)	367, 512, 654
EarI	CTCTTC	3 cut(s)	367, 512, 654
EciI	GGCGGA	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	118, 304
Eco57I	CTGAAG	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	523
FaiI	YATR	4 cut(s)	429, 521, 629, 666
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	270, 562
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	565
HapII	CCGG	3 cut(s)	122, 656, 713
Hin1II	CATG	1 cut(s)	523
HindIII	AAGCTT	2 cut(s)	53, 680
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	3 cut(s)	122, 656, 713
Hpy188I	TCNGA	4 cut(s)	51, 196, 202, 368
Hpy188III	TCNNGA	7 cut(s)	100, 319, 382, 407, 544, 566, 695
HpyAV	CCTTC	2 cut(s)	121, 565
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	8 cut(s)	23, 107, 148, 241, 356, 415, 443, 581
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	110, 211
LguI	GCTCTTC	1 cut(s)	512
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	430
MaeII	ACGT	1 cut(s)	445
MalI	GATC	2 cut(s)	112, 213
MboI	GATC	2 cut(s)	110, 211
MboII	GAAGA	5 cut(s)	54, 233, 384, 499, 671
MfeI	CAATTG	1 cut(s)	215
MluCI	AATT	5 cut(s)	215, 314, 323, 420, 467
MnlI	CCTC	6 cut(s)	87, 156, 362, 540, 637, 712
MseI	TTAA	3 cut(s)	207, 276, 452
MspI	CCGG	3 cut(s)	122, 656, 713
MspR9I	CCNGG	3 cut(s)	122, 525, 713
MunI	CAATTG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	525
NciI	CCSGG	2 cut(s)	122, 713
NdeII	GATC	2 cut(s)	110, 211
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	512
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	133
PmaCI	CACGTG	1 cut(s)	446
PmlI	CACGTG	1 cut(s)	446
Ppu21I	YACGTR	1 cut(s)	446
PshBI	ATTAAT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	523
PspCI	CACGTG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	118, 304
PstI	CTGCAG	1 cut(s)	583
SapI	GCTCTTC	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	207, 276, 452
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	110, 211
Sau96I	GGNCC	2 cut(s)	118, 304
ScrFI	CCNGG	3 cut(s)	122, 525, 713
SetI	ASST	9 cut(s)	57, 98, 362, 448, 497, 507, 591, 684, 691
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	2 cut(s)	473, 579
SinI	GGWCC	2 cut(s)	118, 304
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	5 cut(s)	215, 314, 323, 420, 467
SsiI	CCGC	1 cut(s)	154
StyD4I	CCNGG	3 cut(s)	120, 523, 711
StyI	CCWWGG	1 cut(s)	300
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	673
TasI	AATT	5 cut(s)	215, 314, 323, 420, 467
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	3 cut(s)	207, 276, 452
Tru9I	TTAA	3 cut(s)	207, 276, 452
TscAI	CASTG	4 cut(s)	30, 73, 93, 155
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	5 cut(s)	178, 323, 499, 616, 627
TspRI	CASTG	4 cut(s)	30, 73, 93, 155
VpaK11BI	GGWCC	2 cut(s)	118, 304
VspI	ATTAAT	1 cut(s)	452
XapI	RAATTY	2 cut(s)	323, 420
XceI	RCATGY	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.