AT1G16380

cation H(

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014153
Physical Location & Seq
Reverse (-)
5598411 .. 5601367
2957 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16380.1

Sequence Viewer

Length: 2358 bp
ATGGATCCAAAGATGTTGTTTTGTTTGCCAGAAGGAGATGCATTGTTTAATCCACTCAATACAATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTCTTCTACCTATTCCTAAAACCCTGTGGCCAAGCCGGTCCCGTTGCCCAGATTCTCGCTGGGATTGTGTTGAGTTTGCTCACAATAATCCGCAAAGTCCACGAATTTTTCCTCCAGAAAGATTCAGCAAGCTATTACATCTTTTTCTCATTCCTTTTACGAACAGCCTTTGTGTTCTTGATCGGTCTCGAGATCGATCTTGACTTCATGAAACGAAACTTGAAGAACTCCATTGTCATAACTTTGGGCTCCTTAGTCATTTCTGGCATCATCTGGCTCCCTTTCCTCTGGTTTCTCATCCGTTTCATGCAGATCAAAGGCGATTTCTTAACATTTTACTTAGCCTTCCTCATTACCTTGTCCAACACGGCAGCTCCTGTCGTCATCCGTTCGATCATCGATTGGAAACTGCACACATCTGAGATCGGACGGCTAGCAATCTCATGCGGATTGTTCATAGAGATAACCAACATATTTATCTACACTATCGTCCTTTCTTTCATCTCCGGGACTATGACTGCTGATATTTTTATCTACTCATTTGCCACAGGAGTTATAATCTTGACTAATAGATTCTTAGCTTCATGGCTCCCAAAAAGAAACCCTAAAGAGAAATATCTCTCCAAAGCTGAAACGCTTGCTTTCATCATCCTTATTCTAATCATCGCGTTAACCATCGAATCCAGCAACTTAAACTCAACGCTTTTTGTGTTTATCATCGGATTAATGTTTCCAAGAGAAGGAAAAACTTACAGAACGTTGATCCAACGGTTGAGTTACCCGATTCACGAGTTTGTCCTTCCGGTTTACTTTGGTTACATCGGATTTAGATTCAGCGTCAATTCGTTAACCAAACGCCACTACCTCGTCCTTGGTATGACTGTGGCTTTAAGCCTACTGGGGAAGCTTCTAGGAGTTTTATTCGCTTGTTCATTCTTGAAGATCCCAAAGCAGTATTGGCTTTTCTTGTCAACCATGCTTTCCGTCAAAGGTCATATAGGTCTTGTTCTTCTCGACTCTAACTTGATGTACAAGAAATGGTTTACTCCGGTAGTTCATGATATGTTCGTTGCGGCTCTAGTGATCATGACTTTGTTAAGCGGAGTTATAACATCTTTGTTGCTTAGAAGTCAAGAAAAGAGTTTCGCACATATAAAAACATCACTTGAGTTATTTGACACTACCGAGGAGCTACGAGTGTTGACGTGCGTCTATGGCGTTCGTCATGCTCGTGGATCGATCTCTTTAGTCTCTGCTCTAAGTGGCTTTTCTCCTGGAACTTCTTCTTCGCCGTTCACGCCTTACCTTATGCACCTCATACCGCTCCCGAAGAAGCGGAAAACTGAATTGTTGTACCACGAATTAGACGAAGATGCAGGAAATTCCAACGGCGGAGACGATGAGTTCGGGACTAATGAAGGACTAGAGATCAATGACTCGATCGATTCGTTTACTAGAGACAGAAAAATAATGGTCCGGCAGGTGAAACTTGTGGCGCCGATGGAGAATATGCACGAAGAGATCTGTAACGCCACTGAAGATCTTCGTGTATCGATCGTGTTTCTACCTTTCCATAAACACCAGAGGATCGACGGGAAAACCACGAATGACGGGGAAGTTTTTCGACATATGAACCGGAAGGTTCTAAAGCAAGCTCAATGTTCGATTGGTATCTTTGTGGATAGAAACATAACAGGGTTTCACCAGCTTCACGGGTCTGATTCGGTACAACACGTTGCTGCATTGTTCTTCGGTGGTCCTGATGATCGTGAGGCTCTGTCCTTGTGCAAGTGGCTTACCAATAACTCTCAGATTCACCTCACTGTCATACAGTTTGTGGCGGATGACTCAAAGACAGAGAAAATTGTCGGAGACGCGGTGACCAAGGAAAACAACGAAGTATTCTTGGAGATTGTTAGTGAAGATCAAACCGAAAACGAAACAGATCGAATCTTCTTAGAAGAATTCTATCACAGATTTGTGACGACGGGGCAAGTTGGATTCATAGAGAAGCGAGTGAGCAACGGAATGCAGACGCTGACAATTCTAAGAGAGATCGGGGAGATGTATTCACTGTTTGTGGTAGGAAAAAACAGAGGAGATTGTCCAATGACTTCAGGAATGAATGATTGGGAAGAGTGTCCGGAATTAGGAACGGTCGGAGATTTCTTGGCTTCATCAAATATGGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACATAGAAACTCATTTGATAGCTTTGTAGATGAATAG

Protein Analysis

785

Amino Acids

88.91

Weight (kDa)

6.31

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 35 - 409 1.6e-23 Sodium/hydrogen exchanger, transmembrane
CHX17_2nd PF23256 515 - 604 1.2e-10 Plant cation/H(+) antiporter domain
CHX17_C PF23259 613 - 775 2.2e-09 Plant cation/H(+) antiporter, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16380 AT1G79400
fragaria_vesca FvH4_5g20830 FvH4_5g20830
malus_domestica MD06G1082400.v1.1
prunus_persica Prupe.5G050500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0207831
rosa_laevigata RLG00000003284
rosa_multiflora Rmu_sc0004647.1_g000005
rosa_roxburghii Rroxscaffold_3G00251120
rosa_rugosa Rorug07G0099700 Rorug07G0099800
rosa_samantha Rh7AG233000 Rh7BG228300 Rh7CG248000 Rh7DG239000
rosa_wichuraiana Rw7G019980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 659, 1211
AarI CACCTGC 1 cut(s) 1573
Acc36I ACCTGC 1 cut(s) 1573
AccB1I GGYRCC 1 cut(s) 1597
AccBSI CCGCTC 1 cut(s) 1426
AccII CGCG 2 cut(s) 770, 1979
AccIII TCCGGA 1 cut(s) 2245
AciI CCGC 9 cut(s) 193, 549, 1175, 1203, 1424, 1438, 1494, 1943, 1979
AclI AACGTT 1 cut(s) 860
AclWI GGATC 5 cut(s) 12, 859, 1039, 1345, 1697
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 3 cut(s) 206, 1483, 2066
AcuI CTGAAG 2 cut(s) 1659, 2202
AcyI GRCGYC 1 cut(s) 1598
AfaI GTAC 3 cut(s) 1133, 1457, 1830
AfiI CCNNNNNNNGG 2 cut(s) 842, 2252
AflIII ACRYGT 1 cut(s) 1834
AgsI TTSAA 4 cut(s) 74, 325, 1042, 2318
AjiI CACGTC 1 cut(s) 1308
AjnI CCWGG 1 cut(s) 1375
AjuI GAANNNNNNNTTGG 2 cut(s) 2215, 2247
AluBI AGCT 9 cut(s) 234, 476, 683, 731, 1009, 1294, 1757, 1810, 2343
AluI AGCT 9 cut(s) 234, 476, 683, 731, 1009, 1294, 1757, 1810, 2343
Alw26I GTCTC 5 cut(s) 293, 1357, 1491, 1554, 1968
AlwI GGATC 5 cut(s) 12, 859, 1039, 1345, 1697
AlwNI CAGNNNCTG 2 cut(s) 479, 2140
Ama87I CYCGRG 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 2245
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 473, 1841
ApoI RAATTY 3 cut(s) 206, 1483, 2066
ArsI GACNNNNNNTTYG 2 cut(s) 1490, 1522
AseI ATTAAT 1 cut(s) 827
Asp700I GAANNNNTTC 3 cut(s) 1384, 1644, 1722
AspLEI GCGC 1 cut(s) 1600
AspS9I GGNCC 3 cut(s) 140, 1576, 1859
AsuC2I CCSGG 1 cut(s) 610
AsuHPI GGTGA 4 cut(s) 1597, 1796, 1910, 1993
AsuNHI GCTAGC 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 3 cut(s) 140, 1576, 1859
BalI TGGCCA 1 cut(s) 132
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 1597
BanII GRGCYC 1 cut(s) 353
BauI CACGAG 2 cut(s) 890, 1332
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 485, 1828
BccI CCATC 2 cut(s) 785, 1597
BceAI ACGGC 4 cut(s) 486, 548, 1378, 1507
BciT130I CCWGG 1 cut(s) 1377
BclI TGATCA 1 cut(s) 1185
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 5 cut(s) 293, 1357, 1491, 1554, 1968
BfaI CTAG 5 cut(s) 536, 1013, 1181, 1526, 1557
BfoI RGCGCY 1 cut(s) 1601
BfuAI ACCTGC 1 cut(s) 1573
BglII AGATCT 2 cut(s) 1623, 1642
BisI GCNGC 3 cut(s) 474, 1176, 1842
BlsI GCNGC 3 cut(s) 475, 1177, 1843
Bme1390I CCNGG 2 cut(s) 610, 1377
Bme18I GGWCC 3 cut(s) 140, 1576, 1859
BmeT110I CYCGRG 1 cut(s) 290
BmgBI CACGTC 1 cut(s) 1308
BmgT120I GGNCC 3 cut(s) 140, 1576, 1859
BmiI GGNNCC 6 cut(s) 6, 142, 352, 380, 692, 1599
BmrFI CCNGG 2 cut(s) 610, 1377
BmrI ACTGGG 1 cut(s) 1010
BmsI GCATC 3 cut(s) 28, 378, 1465
BmtI GCTAGC 1 cut(s) 539
BmuI ACTGGG 1 cut(s) 1010
BoxI GACNNNNGTC 1 cut(s) 1310
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 1289
BpuMI CCSGG 1 cut(s) 610
Bsa29I ATCGAT 5 cut(s) 297, 501, 1340, 1545, 1655
BsaBI GATNNNNATC 1 cut(s) 1772
BsaHI GRCGYC 1 cut(s) 1598
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 973, 1287, 1986
BsaWI WCCGGW 4 cut(s) 904, 1150, 1737, 2245
BsaXI ACNNNNNCTCC 4 cut(s) 460, 490, 1965, 1995
Bsc4I CCNNNNNNNGG 2 cut(s) 842, 2252
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 1005
Bse8I GATNNNNATC 1 cut(s) 1772
BseAI TCCGGA 1 cut(s) 2245
BseBI CCWGG 1 cut(s) 1377
BseCI ATCGAT 5 cut(s) 297, 501, 1340, 1545, 1655
BseDI CCNNGG 3 cut(s) 973, 1287, 1986
BseGI GGATG 5 cut(s) 399, 486, 750, 1951, 2296
BseJI GATNNNNATC 1 cut(s) 1772
BseLI CCNNNNNNNGG 2 cut(s) 842, 2252
BseMII CTCAG 2 cut(s) 513, 1925
BseNI ACTGG 1 cut(s) 1005
BseRI GAGGAG 2 cut(s) 1304, 2214
BseXI GCAGC 2 cut(s) 485, 1828
BseYI CCCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 2 cut(s) 770, 1979
Bsh1285I CGRYCG 3 cut(s) 1545, 1659, 2262
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 1597
BshVI ATCGAT 5 cut(s) 297, 501, 1340, 1545, 1655
BsiEI CGRYCG 3 cut(s) 1545, 1659, 2262
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 7 cut(s) 138, 609, 905, 1151, 1579, 1738, 2246
BslFI GGGAC 3 cut(s) 126, 625, 1525
BslI CCNNNNNNNGG 2 cut(s) 842, 2252
BsmAI GTCTC 5 cut(s) 293, 1357, 1491, 1554, 1968
BsmBI CGTCTC 2 cut(s) 1491, 1968
BsmFI GGGAC 3 cut(s) 126, 625, 1525
BsmI GAATGC 2 cut(s) 84, 2136
BsnI GGCC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 2245
Bsp1407I TGTACA 1 cut(s) 1131
BspACI CCGC 9 cut(s) 193, 549, 1175, 1203, 1424, 1438, 1494, 1943, 1979
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 2 cut(s) 514, 1924
BspDI ATCGAT 5 cut(s) 297, 501, 1340, 1545, 1655
BspEI TCCGGA 1 cut(s) 2245
BspFNI CGCG 2 cut(s) 770, 1979
BspHI TCATGA 3 cut(s) 309, 1159, 1188
BspLI GGNNCC 6 cut(s) 6, 142, 352, 380, 692, 1599
BspMI ACCTGC 1 cut(s) 1573
BspOI GCTAGC 1 cut(s) 539
BspPI GGATC 5 cut(s) 12, 859, 1039, 1345, 1697
BspT107I GGYRCC 1 cut(s) 1597
BspTNI GGTCTC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 1426
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 1131
BsrI ACTGG 1 cut(s) 1005
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 973, 1287, 1986
BssNI GRCGYC 1 cut(s) 1598
BssSI CACGAG 2 cut(s) 890, 1332
BssT1I CCWWGG 2 cut(s) 973, 1986
Bst2BI CACGAG 2 cut(s) 890, 1332
Bst2UI CCWGG 1 cut(s) 1377
Bst4CI ACNGT 6 cut(s) 873, 985, 1927, 1935, 2178, 2260
Bst6I CTCTTC 2 cut(s) 1614, 2232
BstACI GRCGYC 1 cut(s) 1598
BstAUI TGTACA 1 cut(s) 1131
BstC8I GCNNGC 5 cut(s) 82, 232, 537, 741, 1755
BstDEI CTNAG 9 cut(s) 355, 442, 522, 679, 1226, 1361, 1911, 2059, 2150
BstEII GGTNACC 1 cut(s) 1981
BstF5I GGATG 5 cut(s) 399, 486, 750, 1951, 2296
BstFNI CGCG 2 cut(s) 770, 1979
BstH2I RGCGCY 1 cut(s) 1601
BstHHI GCGC 1 cut(s) 1600
BstMAI GTCTC 5 cut(s) 293, 1357, 1491, 1554, 1968
BstMCI CGRYCG 3 cut(s) 1545, 1659, 2262
BstMWI GCNNNNNNNGC 3 cut(s) 1060, 1317, 1399
BstNI CCWGG 1 cut(s) 1377
BstPAI GACNNNNGTC 1 cut(s) 1310
BstPI GGTNACC 1 cut(s) 1981
BstSCI CCNGG 2 cut(s) 608, 1375
BstUI CGCG 2 cut(s) 770, 1979
BstV1I GCAGC 2 cut(s) 485, 1828
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 4 cut(s) 4, 1044, 1623, 1642
BstYI RGATCY 4 cut(s) 4, 1044, 1623, 1642
Bsu15I ATCGAT 5 cut(s) 297, 501, 1340, 1545, 1655
BsuRI GGCC 1 cut(s) 132
BsuTUI ATCGAT 5 cut(s) 297, 501, 1340, 1545, 1655
BtgZI GCGATG 1 cut(s) 751
BtrI CACGTC 1 cut(s) 1308
BtsCI GGATG 5 cut(s) 399, 486, 750, 1951, 2296
BtsIMutI CAGTG 3 cut(s) 1635, 1923, 2174
BveI ACCTGC 1 cut(s) 1573
Cac8I GCNNGC 5 cut(s) 82, 232, 537, 741, 1755
CaiI CAGNNNCTG 2 cut(s) 479, 2140
CciI TCATGA 3 cut(s) 309, 1159, 1188
CfoI GCGC 1 cut(s) 1600
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 140, 1576, 1859
ClaI ATCGAT 5 cut(s) 297, 501, 1340, 1545, 1655
CseI GACGC 4 cut(s) 928, 1300, 1985, 2146
Csp6I GTAC 3 cut(s) 1132, 1456, 1829
CviAII CATG 8 cut(s) 310, 409, 546, 687, 1078, 1160, 1189, 1328
CviQI GTAC 3 cut(s) 1132, 1456, 1829
DdeI CTNAG 9 cut(s) 355, 442, 522, 679, 1226, 1361, 1911, 2059, 2150
DinI GGCGCC 1 cut(s) 1599
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 1614, 2232
EarI CTCTTC 2 cut(s) 1614, 2232
EciI GGCGGA 2 cut(s) 1509, 1958
Eco130I CCWWGG 2 cut(s) 973, 1986
Eco24I GRGCYC 1 cut(s) 353
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 3 cut(s) 140, 1576, 1859
Eco57I CTGAAG 2 cut(s) 1659, 2202
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 1981
EcoO65I GGTNACC 1 cut(s) 1981
EcoRI GAATTC 1 cut(s) 2066
EcoRII CCWGG 1 cut(s) 1375
EcoT14I CCWWGG 2 cut(s) 973, 1986
EcoT22I ATGCAT 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 353
EgeI GGCGCC 1 cut(s) 1599
EheI GGCGCC 1 cut(s) 1599
ErhI CCWWGG 2 cut(s) 973, 1986
Esp3I CGTCTC 2 cut(s) 1491, 1968
FaeI CATG 8 cut(s) 313, 412, 549, 690, 1081, 1163, 1192, 1331
FaqI GGGAC 3 cut(s) 126, 625, 1525
FatI CATG 8 cut(s) 309, 408, 545, 686, 1077, 1159, 1188, 1327
FauNDI CATATG 1 cut(s) 1731
FbaI TGATCA 1 cut(s) 1185
Fnu4HI GCNGC 3 cut(s) 474, 1176, 1842
FokI GGATG 5 cut(s) 386, 473, 737, 1958, 2303
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 3 cut(s) 474, 1176, 1842
FspBI CTAG 5 cut(s) 536, 1013, 1181, 1526, 1557
GlaI GCGC 1 cut(s) 1599
GluI GCNGC 3 cut(s) 474, 1176, 1842
GsaI CCCAGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 1601
HaeIII GGCC 1 cut(s) 132
HapII CCGG 7 cut(s) 138, 609, 905, 1151, 1579, 1738, 2246
HgaI GACGC 4 cut(s) 928, 1300, 1985, 2146
HhaI GCGC 1 cut(s) 1600
Hin1I GRCGYC 1 cut(s) 1598
Hin1II CATG 8 cut(s) 313, 412, 549, 690, 1081, 1163, 1192, 1331
Hin6I GCGC 1 cut(s) 1598
HinP1I GCGC 1 cut(s) 1598
HincII GTYRAC 4 cut(s) 774, 951, 1074, 1305
HindII GTYRAC 4 cut(s) 774, 951, 1074, 1305
HindIII AAGCTT 1 cut(s) 1007
HpaI GTTAAC 2 cut(s) 774, 951
HpaII CCGG 7 cut(s) 138, 609, 905, 1151, 1579, 1738, 2246
HphI GGTGA 4 cut(s) 1597, 1796, 1910, 1993
Hpy166II GTNNAC 9 cut(s) 202, 774, 910, 951, 1074, 1146, 1305, 1398, 1554
Hpy188I TCNGA 8 cut(s) 523, 530, 824, 926, 1822, 1914, 1973, 2264
Hpy8I GTNNAC 9 cut(s) 202, 774, 910, 951, 1074, 1146, 1305, 1398, 1554
Hpy99I CGWCG 2 cut(s) 1697, 2092
HpyAV CCTTC 6 cut(s) 26, 457, 836, 911, 1514, 1735
HpyCH4III ACNGT 6 cut(s) 873, 985, 1927, 1935, 2178, 2260
HpyCH4IV ACGT 3 cut(s) 860, 1307, 1836
HpyF10VI GCNNNNNNNGC 3 cut(s) 1060, 1317, 1399
HpyF3I CTNAG 9 cut(s) 355, 442, 522, 679, 1226, 1361, 1911, 2059, 2150
HpySE526I ACGT 3 cut(s) 860, 1307, 1836
Hsp92I GRCGYC 1 cut(s) 1598
Hsp92II CATG 8 cut(s) 313, 412, 549, 690, 1081, 1163, 1192, 1331
HspAI GCGC 1 cut(s) 1598
KasI GGCGCC 1 cut(s) 1597
Kpn2I TCCGGA 1 cut(s) 2245
Ksp22I TGATCA 1 cut(s) 1185
KspAI GTTAAC 2 cut(s) 774, 951
LmnI GCTCC 6 cut(s) 356, 384, 481, 696, 1291, 1431
Lsp1109I GCAGC 2 cut(s) 485, 1828
LweI GCATC 3 cut(s) 28, 378, 1465
MaeI CTAG 5 cut(s) 536, 1013, 1181, 1526, 1557
MaeII ACGT 3 cut(s) 860, 1307, 1836
MaeIII GTNAC 5 cut(s) 878, 917, 1628, 1981, 2083
MbiI CCGCTC 1 cut(s) 1426
MflI RGATCY 4 cut(s) 4, 1044, 1623, 1642
MhlI GDGCHC 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 132
MluNI TGGCCA 1 cut(s) 132
Mly113I GGCGCC 1 cut(s) 1598
MlyI GAGTC 3 cut(s) 1112, 1532, 1943
MmeI TCCRAC 6 cut(s) 489, 892, 1512, 1951, 2080, 2242
Mox20I TGGCCA 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 43
MroI TCCGGA 1 cut(s) 2245
MroXI GAANNNNTTC 3 cut(s) 1384, 1644, 1722
MscI TGGCCA 1 cut(s) 132
MseI TTAA 8 cut(s) 48, 431, 773, 794, 827, 950, 992, 1199
MslI CAYNNNNRTG 1 cut(s) 1332
Msp20I TGGCCA 1 cut(s) 132
MspI CCGG 7 cut(s) 138, 609, 905, 1151, 1579, 1738, 2246
MspR9I CCNGG 2 cut(s) 610, 1377
Mva1269I GAATGC 2 cut(s) 84, 2136
MvaI CCWGG 1 cut(s) 1377
MvnI CGCG 2 cut(s) 770, 1979
MwoI GCNNNNNNNGC 3 cut(s) 1060, 1317, 1399
NarI GGCGCC 1 cut(s) 1598
NciI CCSGG 1 cut(s) 610
NdeI CATATG 1 cut(s) 1731
NheI GCTAGC 1 cut(s) 535
NlaIII CATG 8 cut(s) 313, 412, 549, 690, 1081, 1163, 1192, 1331
NlaIV GGNNCC 6 cut(s) 6, 142, 352, 380, 692, 1599
NmuCI GTSAC 2 cut(s) 1981, 2083
NsiI ATGCAT 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 290
PagI TCATGA 3 cut(s) 309, 1159, 1188
PaqCI CACCTGC 1 cut(s) 1573
PcsI WCGNNNNNNNCGW 4 cut(s) 1330, 1467, 1497, 1547
PctI GAATGC 2 cut(s) 84, 2136
PdmI GAANNNNTTC 3 cut(s) 1384, 1644, 1722
PfoI TCCNGGA 2 cut(s) 608, 1375
PkrI GCNGC 3 cut(s) 475, 1177, 1843
Ple19I CGATCG 2 cut(s) 1545, 1659
PleI GAGTC 3 cut(s) 1112, 1532, 1943
PluTI GGCGCC 1 cut(s) 1601
PpsI GAGTC 3 cut(s) 1112, 1532, 1943
PshAI GACNNNNGTC 1 cut(s) 1310
PshBI ATTAAT 1 cut(s) 827
PsiI TTATAA 2 cut(s) 659, 1211
Psp1406I AACGTT 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 1375
PspEI GGTNACC 1 cut(s) 1981
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 1375
PspN4I GGNNCC 6 cut(s) 6, 142, 352, 380, 692, 1599
PspPI GGNCC 3 cut(s) 140, 1576, 1859
PsrI GAACNNNNNNTAC 2 cut(s) 2298, 2330
PstNI CAGNNNCTG 2 cut(s) 479, 2140
PsuI RGATCY 4 cut(s) 4, 1044, 1623, 1642
PvuI CGATCG 2 cut(s) 1545, 1659
RsaI GTAC 3 cut(s) 1133, 1457, 1830
RsaNI GTAC 3 cut(s) 1132, 1456, 1829
RseI CAYNNNNRTG 1 cut(s) 1332
SaqAI TTAA 8 cut(s) 48, 431, 773, 794, 827, 950, 992, 1199
SatI GCNGC 3 cut(s) 474, 1176, 1842
Sau96I GGNCC 3 cut(s) 140, 1576, 1859
SchI GAGTC 3 cut(s) 1112, 1532, 1943
ScrFI CCNGG 2 cut(s) 610, 1377
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 3 cut(s) 28, 378, 1465
SfoI GGCGCC 1 cut(s) 1599
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 3 cut(s) 140, 1576, 1859
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 1332
SmlI CTYRAG 2 cut(s) 290, 1268
SmoI CTYRAG 2 cut(s) 290, 1268
SsiI CCGC 9 cut(s) 193, 549, 1175, 1203, 1424, 1438, 1494, 1943, 1979
SspDI GGCGCC 1 cut(s) 1597
SspMI CTAG 5 cut(s) 536, 1013, 1181, 1526, 1557
StyD4I CCNGG 2 cut(s) 608, 1375
StyI CCWWGG 2 cut(s) 973, 1986
TaaI ACNGT 6 cut(s) 873, 985, 1927, 1935, 2178, 2260
TaiI ACGT 3 cut(s) 863, 1310, 1839
TaqII GACCGA 1 cut(s) 275
TatI WGTACW 1 cut(s) 1131
TauI GCSGC 1 cut(s) 1178
Tru1I TTAA 8 cut(s) 48, 431, 773, 794, 827, 950, 992, 1199
Tru9I TTAA 8 cut(s) 48, 431, 773, 794, 827, 950, 992, 1199
TscAI CASTG 3 cut(s) 1642, 1930, 2181
TseFI GTSAC 2 cut(s) 1981, 2083
TseI GCWGC 2 cut(s) 473, 1841
Tsp45I GTSAC 2 cut(s) 1981, 2083
TspGWI ACGGA 4 cut(s) 392, 479, 1075, 2142
TspRI CASTG 3 cut(s) 1642, 1930, 2181
VpaK11BI GGWCC 3 cut(s) 140, 1576, 1859
VspI ATTAAT 1 cut(s) 827
XapI RAATTY 3 cut(s) 206, 1483, 2066
XcmI CCANNNNNNNNNTGG 2 cut(s) 158, 1056
XhoI CTCGAG 1 cut(s) 290
XmnI GAANNNNTTC 3 cut(s) 1384, 1644, 1722
XspI CTAG 5 cut(s) 536, 1013, 1181, 1526, 1557
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.