Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004352

Physical Location & Seq

Genomic Coordinates Forward (+)

7887836 .. 7889124

Gene Structure 1289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0099700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTTTCATCTGGTTGGCGGATGGGACAATCAGTAAAAATTAACACCGCTTATCTCAGTGAGCTGATTTTGAAAGAGTGGAAGAAAAAGAAGCATGCACATTGGCGCTACAGAAACGCACGTACAGAGTTGATGACACACGATATTGGTCACATTAAACGAACTTGGAGAAAGGTTTTGCGCATTAGGAGGCAAAAGCATCGTGAACAAAACAGCTTTTTGGCTAAGTTCTACATCAAGCGTTTTGAGGATTTGAAACATGATATTGAGAACTCTTCCAATAATTGGACCAAGGGTGTTGCAGTAAGGGAAGTATCTAACTTCATGGTGTGTACTATAAATATGGGCAACGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chorein_N PH Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

119

Amino Acids

14.41

Weight (kDa)

10.32

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17140 AT4G17140 AT4G17140
fragaria_vesca	FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820
malus_domestica	MD04G1057200.v1.1 MD06G1043800.v1.1
prunus_persica	Prupe.5G050700_v2.0.a1 Prupe.5G050700_v2.0.a1 Prupe.5G050700_v2.0.a1 Prupe.5G050700_v2.0.a1
pyrus_communis	pycom04g05080 pycom06g03680 pycom06g03700
rosa_chinensis	RchiOBHm_Chr7g0207821
rosa_laevigata	RLG00000003286
rosa_multiflora	Rmu_sc0004647.1_g000014 Rmu_sc0010112.1_g000001
rosa_roxburghii	Rroxscaffold_3G00251130 Rroxscaffold_3G00251140
rosa_rugosa	Rorug07G0099700
rosa_samantha	Rh7AG232900 Rh7BG228200 Rh7CG246900 Rh7DG238900
rosa_wichuraiana	Rw7G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	285
AciI	CCGC	2 cut(s)	19, 48
AfaI	GTAC	2 cut(s)	124, 334
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	73, 256
AluBI	AGCT	2 cut(s)	64, 216
AluI	AGCT	2 cut(s)	64, 216
AspLEI	GCGC	2 cut(s)	108, 183
AspS9I	GGNCC	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	288
BccI	CCATC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmsI	GCATC	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	19, 48
BspCNI	CTCAG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	56, 225
BstF5I	GGATG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	108, 183
BstNSI	RCATGY	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	2 cut(s)	108, 183
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	123, 333
CviAII	CATG	3 cut(s)	95, 260, 325
CviJI	RGCY	3 cut(s)	64, 216, 224
CviKI_1	RGCY	3 cut(s)	64, 216, 224
CviQI	GTAC	2 cut(s)	123, 333
DdeI	CTNAG	2 cut(s)	56, 225
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	3 cut(s)	98, 263, 328
FaiI	YATR	5 cut(s)	96, 261, 326, 338, 344
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	94, 259, 324
FokI	GGATG	1 cut(s)	34
FspI	TGCGCA	1 cut(s)	182
GlaI	GCGC	2 cut(s)	107, 182
HaeII	RGCGCY	1 cut(s)	109
HhaI	GCGC	2 cut(s)	108, 183
Hin1II	CATG	3 cut(s)	98, 263, 328
Hin6I	GCGC	2 cut(s)	106, 181
HinP1I	GCGC	2 cut(s)	106, 181
Hpy166II	GTNNAC	2 cut(s)	206, 333
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	206, 333
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	98, 302
HpyF3I	CTNAG	2 cut(s)	56, 225
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	98, 263, 328
HspAI	GCGC	2 cut(s)	106, 181
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	94, 267
MluCI	AATT	2 cut(s)	39, 283
MnlI	CCTC	2 cut(s)	183, 241
MseI	TTAA	2 cut(s)	42, 156
NlaIII	CATG	3 cut(s)	98, 263, 328
NmuCI	GTSAC	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	182
NspI	RCATGY	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	288
RsaI	GTAC	2 cut(s)	124, 334
RsaNI	GTAC	2 cut(s)	123, 333
SaqAI	TTAA	2 cut(s)	42, 156
Sau96I	GGNCC	1 cut(s)	288
SetI	ASST	4 cut(s)	66, 124, 177, 218
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	288
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	2 cut(s)	39, 283
SsiI	CCGC	2 cut(s)	19, 48
StyI	CCWWGG	1 cut(s)	291
TaiI	ACGT	1 cut(s)	124
TasI	AATT	2 cut(s)	39, 283
TatI	WGTACW	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	42, 156
Tru9I	TTAA	2 cut(s)	42, 156
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	288
XceI	RCATGY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.