Repeating coiled region of VPS13
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17140 AT4G17140 AT4G17140 |
| fragaria_vesca | FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 FvH4_5g20820 |
| malus_domestica | MD04G1057200.v1.1 MD06G1043800.v1.1 |
| prunus_persica | Prupe.5G050700_v2.0.a1 Prupe.5G050700_v2.0.a1 Prupe.5G050700_v2.0.a1 Prupe.5G050700_v2.0.a1 |
| pyrus_communis | pycom04g05080 pycom06g03680 pycom06g03700 |
| rosa_chinensis | RchiOBHm_Chr7g0207821 |
| rosa_laevigata | RLG00000003286 |
| rosa_multiflora | Rmu_sc0004647.1_g000014 Rmu_sc0010112.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00251130 Rroxscaffold_3G00251140 |
| rosa_rugosa | Rorug07G0099700 |
| rosa_samantha | Rh7AG232900 Rh7BG228200 Rh7CG246900 Rh7DG238900 |
| rosa_wichuraiana | Rw7G019940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1763, 2981, 5139 |
| AarI | CACCTGC | 2 cut(s) | 3916, 5101 |
| AatII | GACGTC | 2 cut(s) | 2363, 5354 |
| Acc16I | TGCGCA | 1 cut(s) | 4228 |
| Acc36I | ACCTGC | 3 cut(s) | 3247, 3916, 5101 |
| Acc65I | GGTACC | 2 cut(s) | 36, 2009 |
| AccB1I | GGYRCC | 3 cut(s) | 36, 2009, 2272 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3143 |
| AccI | GTMKAC | 4 cut(s) | 3078, 3130, 3298, 4706 |
| AccII | CGCG | 2 cut(s) | 1919, 2938 |
| AciI | CCGC | 9 cut(s) | 542, 982, 1919, 2599, 2936, 3443, 4831, 5003, 5987 |
| AcoI | YGGCCR | 2 cut(s) | 256, 5576 |
| AcuI | CTGAAG | 8 cut(s) | 431, 968, 1136, 1472, 2817, 4674, 5703, 5946 |
| AcyI | GRCGYC | 3 cut(s) | 2360, 5351, 6104 |
| AflII | CTTAAG | 1 cut(s) | 233 |
| AflIII | ACRYGT | 1 cut(s) | 1009 |
| AgeI | ACCGGT | 1 cut(s) | 4494 |
| AhlI | ACTAGT | 1 cut(s) | 3887 |
| AjnI | CCWGG | 8 cut(s) | 39, 258, 735, 1892, 3270, 3786, 4525, 5455 |
| AleI | CACNNNNGTG | 1 cut(s) | 1688 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4551, 4583 |
| Alw21I | GWGCWC | 5 cut(s) | 372, 619, 2790, 3532, 3959 |
| Alw44I | GTGCAC | 2 cut(s) | 368, 615 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 90, 1363, 2627, 2666 |
| Ama87I | CYCGRG | 2 cut(s) | 1309, 4362 |
| AoxI | GGCC | 8 cut(s) | 72, 256, 872, 2374, 3522, 4850, 5119, 5576 |
| ApaLI | GTGCAC | 2 cut(s) | 368, 615 |
| ApeKI | GCWGC | 9 cut(s) | 539, 841, 887, 1162, 1814, 1817, 3389, 4187, 5664 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 901, 933, 1685, 1717 |
| AseI | ATTAAT | 2 cut(s) | 3542, 3993 |
| AsiGI | ACCGGT | 1 cut(s) | 4494 |
| Asp718I | GGTACC | 2 cut(s) | 36, 2009 |
| AspA2I | CCTAGG | 1 cut(s) | 1031 |
| AspLEI | GCGC | 4 cut(s) | 1851, 4229, 4645, 5689 |
| AsuC2I | CCSGG | 4 cut(s) | 1874, 4363, 4364, 6121 |
| AsuHPI | GGTGA | 9 cut(s) | 146, 2120, 2483, 2720, 3259, 3897, 4082, 4316, 5243 |
| AvaI | CYCGRG | 2 cut(s) | 1309, 4362 |
| AvaII | GGWCC | 5 cut(s) | 622, 733, 1885, 4836, 5844 |
| AvrII | CCTAGG | 1 cut(s) | 1031 |
| AxyI | CCTNAGG | 1 cut(s) | 2995 |
| BaeGI | GKGCMC | 2 cut(s) | 372, 619 |
| BalI | TGGCCA | 2 cut(s) | 258, 5578 |
| BamHI | GGATCC | 3 cut(s) | 262, 440, 4321 |
| BanI | GGYRCC | 3 cut(s) | 36, 2009, 2272 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1037, 1069 |
| BauI | CACGAG | 1 cut(s) | 2508 |
| BbsI | GAAGAC | 2 cut(s) | 1407, 2910 |
| Bbv12I | GWGCWC | 5 cut(s) | 372, 619, 2790, 3532, 3959 |
| BbvI | GCAGC | 9 cut(s) | 551, 828, 899, 1149, 1804, 1826, 3376, 4199, 5651 |
| BceAI | ACGGC | 1 cut(s) | 3983 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 10, 44 |
| BciT130I | CCWGG | 8 cut(s) | 41, 260, 737, 1894, 3272, 3788, 4527, 5457 |
| BciVI | GTATCC | 2 cut(s) | 926, 1801 |
| BclI | TGATCA | 3 cut(s) | 447, 1753, 4780 |
| BcnI | CCSGG | 4 cut(s) | 1874, 4363, 4364, 6121 |
| BcuI | ACTAGT | 1 cut(s) | 3887 |
| BfmI | CTRYAG | 5 cut(s) | 1250, 1812, 1818, 2060, 5212 |
| BfoI | RGCGCY | 1 cut(s) | 5690 |
| BfrI | CTTAAG | 1 cut(s) | 233 |
| BfuAI | ACCTGC | 3 cut(s) | 3247, 3916, 5101 |
| BfuI | GTATCC | 2 cut(s) | 926, 1801 |
| BglII | AGATCT | 6 cut(s) | 1169, 2334, 2365, 5726, 5743, 5860 |
| BlnI | CCTAGG | 1 cut(s) | 1031 |
| BlpI | GCTNAGC | 1 cut(s) | 303 |
| BmcAI | AGTACT | 1 cut(s) | 5370 |
| Bme18I | GGWCC | 5 cut(s) | 622, 733, 1885, 4836, 5844 |
| BmeT110I | CYCGRG | 2 cut(s) | 1309, 4362 |
| BmrI | ACTGGG | 1 cut(s) | 618 |
| BmuI | ACTGGG | 1 cut(s) | 618 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1179, 1950 |
| BpiI | GAAGAC | 2 cut(s) | 1407, 2910 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3946, 3978 |
| BpmI | CTGGAG | 2 cut(s) | 1717, 5398 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1710 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 303 |
| BpuEI | CTTGAG | 6 cut(s) | 62, 533, 1519, 3189, 4538, 5020 |
| BpuMI | CCSGG | 4 cut(s) | 1874, 4363, 4364, 6121 |
| Bsa29I | ATCGAT | 4 cut(s) | 1581, 1836, 2314, 3778 |
| BsaAI | YACGTR | 2 cut(s) | 52, 1133 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1144, 1832, 2055, 2478 |
| BsaHI | GRCGYC | 3 cut(s) | 2360, 5351, 6104 |
| BsaI | GGTCTC | 3 cut(s) | 1667, 5270, 5434 |
| BsaWI | WCCGGW | 1 cut(s) | 4494 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 4089, 4119, 4249, 4279 |
| Bse118I | RCCGGY | 3 cut(s) | 2592, 4494, 6024 |
| Bse21I | CCTNAGG | 1 cut(s) | 2995 |
| Bse3DI | GCAATG | 5 cut(s) | 381, 710, 3165, 4458, 5070 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1144, 1832, 2055, 2478 |
| BseBI | CCWGG | 8 cut(s) | 41, 260, 737, 1894, 3272, 3788, 4527, 5457 |
| BseCI | ATCGAT | 4 cut(s) | 1581, 1836, 2314, 3778 |
| BseJI | GATNNNNATC | 4 cut(s) | 1144, 1832, 2055, 2478 |
| BseMI | GCAATG | 5 cut(s) | 381, 710, 3165, 4458, 5070 |
| BseMII | CTCAG | 9 cut(s) | 294, 1559, 2175, 2658, 3009, 3545, 3765, 4331, 4614 |
| BseRI | GAGGAG | 3 cut(s) | 2357, 2360, 3222 |
| BseSI | GKGCMC | 2 cut(s) | 372, 619 |
| BseXI | GCAGC | 9 cut(s) | 551, 828, 899, 1149, 1804, 1826, 3376, 4199, 5651 |
| BseYI | CCCAGC | 3 cut(s) | 2299, 2931, 3475 |
| BsgI | GTGCAG | 3 cut(s) | 1844, 2988, 4463 |
| Bsh1236I | CGCG | 2 cut(s) | 1919, 2938 |
| BshFI | GGCC | 8 cut(s) | 74, 258, 874, 2376, 3524, 4852, 5121, 5578 |
| BshNI | GGYRCC | 3 cut(s) | 36, 2009, 2272 |
| BshTI | ACCGGT | 1 cut(s) | 4494 |
| BshVI | ATCGAT | 4 cut(s) | 1581, 1836, 2314, 3778 |
| BsiHKAI | GWGCWC | 5 cut(s) | 372, 619, 2790, 3532, 3959 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1309, 4362 |
| BsiSI | CCGG | 6 cut(s) | 1873, 2593, 4363, 4495, 6025, 6120 |
| BslFI | GGGAC | 5 cut(s) | 72, 1938, 2914, 5031, 5857 |
| BsmBI | CGTCTC | 2 cut(s) | 2351, 2414 |
| BsmFI | GGGAC | 5 cut(s) | 72, 1938, 2914, 5031, 5857 |
| BsmI | GAATGC | 4 cut(s) | 184, 5254, 5816, 5962 |
| BsnI | GGCC | 8 cut(s) | 74, 258, 874, 2376, 3524, 4852, 5121, 5578 |
| Bso31I | GGTCTC | 3 cut(s) | 1667, 5270, 5434 |
| BsoBI | CYCGRG | 2 cut(s) | 1309, 4362 |
| Bsp1286I | GDGCHC | 5 cut(s) | 372, 619, 2790, 3532, 3959 |
| Bsp1407I | TGTACA | 1 cut(s) | 343 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 303 |
| Bsp19I | CCATGG | 3 cut(s) | 242, 686, 4950 |
| BspACI | CCGC | 9 cut(s) | 542, 982, 1919, 2599, 2936, 3443, 4831, 5003, 5987 |
| BspANI | GGCC | 8 cut(s) | 74, 258, 874, 2376, 3524, 4852, 5121, 5578 |
| BspCNI | CTCAG | 9 cut(s) | 295, 1558, 2174, 2659, 3008, 3544, 3764, 4330, 4615 |
| BspDI | ATCGAT | 4 cut(s) | 1581, 1836, 2314, 3778 |
| BspFNI | CGCG | 2 cut(s) | 1919, 2938 |
| BspHI | TCATGA | 4 cut(s) | 2698, 2778, 3400, 4368 |
| BspMAI | CTGCAG | 5 cut(s) | 1254, 1816, 1822, 2064, 5216 |
| BspMI | ACCTGC | 3 cut(s) | 3247, 3916, 5101 |
| BspQI | GCTCTTC | 2 cut(s) | 1491, 3947 |
| BspT107I | GGYRCC | 3 cut(s) | 36, 2009, 2272 |
| BspTI | CTTAAG | 1 cut(s) | 233 |
| BspTNI | GGTCTC | 3 cut(s) | 1667, 5270, 5434 |
| BsrDI | GCAATG | 5 cut(s) | 381, 710, 3165, 4458, 5070 |
| BsrFI | RCCGGY | 3 cut(s) | 2592, 4494, 6024 |
| BsrGI | TGTACA | 1 cut(s) | 343 |
| BssAI | RCCGGY | 3 cut(s) | 2592, 4494, 6024 |
| BssNI | GRCGYC | 3 cut(s) | 2360, 5351, 6104 |
| BssSI | CACGAG | 1 cut(s) | 2508 |
| BssT1I | CCWWGG | 9 cut(s) | 242, 552, 686, 1031, 1686, 2013, 2378, 4950, 6067 |
| Bst2BI | CACGAG | 1 cut(s) | 2508 |
| Bst2UI | CCWGG | 8 cut(s) | 41, 260, 737, 1894, 3272, 3788, 4527, 5457 |
| Bst6I | CTCTTC | 6 cut(s) | 1491, 2417, 3947, 4590, 5315, 5610 |
| BstACI | GRCGYC | 3 cut(s) | 2360, 5351, 6104 |
| BstAFI | CTTAAG | 1 cut(s) | 233 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 179, 1584, 5519 |
| BstAUI | TGTACA | 1 cut(s) | 343 |
| BstBAI | YACGTR | 2 cut(s) | 52, 1133 |
| BstDSI | CCRYGG | 3 cut(s) | 242, 686, 4950 |
| BstEII | GGTNACC | 1 cut(s) | 4490 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4530 |
| BstFNI | CGCG | 2 cut(s) | 1919, 2938 |
| BstH2I | RGCGCY | 1 cut(s) | 5690 |
| BstHHI | GCGC | 4 cut(s) | 1851, 4229, 4645, 5689 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 163, 179, 255, 313, 1584, 4965, 5519 |
| BstNI | CCWGG | 8 cut(s) | 41, 260, 737, 1894, 3272, 3788, 4527, 5457 |
| BstNSI | RCATGY | 3 cut(s) | 695, 1013, 5195 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1179, 1950 |
| BstPI | GGTNACC | 1 cut(s) | 4490 |
| BstSFI | CTRYAG | 5 cut(s) | 1250, 1812, 1818, 2060, 5212 |
| BstSLI | GKGCMC | 2 cut(s) | 372, 619 |
| BstSNI | TACGTA | 1 cut(s) | 1133 |
| BstUI | CGCG | 2 cut(s) | 1919, 2938 |
| BstV1I | GCAGC | 9 cut(s) | 551, 828, 899, 1149, 1804, 1826, 3376, 4199, 5651 |
| BstV2I | GAAGAC | 2 cut(s) | 1407, 2910 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 729 |
| Bsu15I | ATCGAT | 4 cut(s) | 1581, 1836, 2314, 3778 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2995 |
| BsuI | GTATCC | 2 cut(s) | 926, 1801 |
| BsuRI | GGCC | 8 cut(s) | 74, 258, 874, 2376, 3524, 4852, 5121, 5578 |
| BsuTUI | ATCGAT | 4 cut(s) | 1581, 1836, 2314, 3778 |
| BtgI | CCRYGG | 3 cut(s) | 242, 686, 4950 |
| BtgZI | GCGATG | 2 cut(s) | 3057, 4653 |
| BtsI | GCAGTG | 3 cut(s) | 1194, 1259, 1827 |
| BveI | ACCTGC | 3 cut(s) | 3247, 3916, 5101 |
| CaiI | CAGNNNCTG | 4 cut(s) | 90, 1363, 2627, 2666 |
| CciI | TCATGA | 4 cut(s) | 2698, 2778, 3400, 4368 |
| CfoI | GCGC | 4 cut(s) | 1851, 4229, 4645, 5689 |
| Cfr10I | RCCGGY | 3 cut(s) | 2592, 4494, 6024 |
| Cfr9I | CCCGGG | 1 cut(s) | 4362 |
| ClaI | ATCGAT | 4 cut(s) | 1581, 1836, 2314, 3778 |
| CseI | GACGC | 2 cut(s) | 5891, 6093 |
| CspAI | ACCGGT | 1 cut(s) | 4494 |
| DraI | TTTAAA | 3 cut(s) | 745, 2886, 4980 |
| EaeI | YGGCCR | 2 cut(s) | 256, 5576 |
| Eam1104I | CTCTTC | 6 cut(s) | 1491, 2417, 3947, 4590, 5315, 5610 |
| EarI | CTCTTC | 6 cut(s) | 1491, 2417, 3947, 4590, 5315, 5610 |
| Eco105I | TACGTA | 1 cut(s) | 1133 |
| Eco130I | CCWWGG | 9 cut(s) | 242, 552, 686, 1031, 1686, 2013, 2378, 4950, 6067 |
| Eco31I | GGTCTC | 3 cut(s) | 1667, 5270, 5434 |
| Eco32I | GATATC | 3 cut(s) | 1915, 4036, 5801 |
| Eco47I | GGWCC | 5 cut(s) | 622, 733, 1885, 4836, 5844 |
| Eco57I | CTGAAG | 8 cut(s) | 431, 968, 1136, 1472, 2817, 4674, 5703, 5946 |
| Eco81I | CCTNAGG | 1 cut(s) | 2995 |
| Eco88I | CYCGRG | 2 cut(s) | 1309, 4362 |
| Eco91I | GGTNACC | 1 cut(s) | 4490 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4530 |
| EcoO109I | RGGNCCY | 3 cut(s) | 73, 4836, 5844 |
| EcoO65I | GGTNACC | 1 cut(s) | 4490 |
| EcoRII | CCWGG | 8 cut(s) | 39, 258, 735, 1892, 3270, 3786, 4525, 5455 |
| EcoRV | GATATC | 3 cut(s) | 1915, 4036, 5801 |
| EcoT14I | CCWWGG | 9 cut(s) | 242, 552, 686, 1031, 1686, 2013, 2378, 4950, 6067 |
| EcoT22I | ATGCAT | 2 cut(s) | 114, 4140 |
| ErhI | CCWWGG | 9 cut(s) | 242, 552, 686, 1031, 1686, 2013, 2378, 4950, 6067 |
| Esp3I | CGTCTC | 2 cut(s) | 2351, 2414 |
| FaqI | GGGAC | 5 cut(s) | 72, 1938, 2914, 5031, 5857 |
| FauI | CCCGC | 4 cut(s) | 535, 2592, 4824, 4996 |
| FauNDI | CATATG | 2 cut(s) | 108, 4005 |
| FbaI | TGATCA | 3 cut(s) | 447, 1753, 4780 |
| FblI | GTMKAC | 4 cut(s) | 3078, 3130, 3298, 4706 |
| FspI | TGCGCA | 1 cut(s) | 4228 |
| GlaI | GCGC | 4 cut(s) | 1850, 4228, 4644, 5688 |
| GsaI | CCCAGC | 3 cut(s) | 2303, 2935, 3479 |
| GsuI | CTGGAG | 2 cut(s) | 1717, 5398 |
| HaeII | RGCGCY | 1 cut(s) | 5690 |
| HaeIII | GGCC | 8 cut(s) | 74, 258, 874, 2376, 3524, 4852, 5121, 5578 |
| HapII | CCGG | 6 cut(s) | 1873, 2593, 4363, 4495, 6025, 6120 |
| HgaI | GACGC | 2 cut(s) | 5891, 6093 |
| HhaI | GCGC | 4 cut(s) | 1851, 4229, 4645, 5689 |
| Hin1I | GRCGYC | 3 cut(s) | 2360, 5351, 6104 |
| Hin6I | GCGC | 4 cut(s) | 1849, 4227, 4643, 5687 |
| HinP1I | GCGC | 4 cut(s) | 1849, 4227, 4643, 5687 |
| HincII | GTYRAC | 5 cut(s) | 697, 3079, 3299, 4650, 5080 |
| HindII | GTYRAC | 5 cut(s) | 697, 3079, 3299, 4650, 5080 |
| HindIII | AAGCTT | 4 cut(s) | 1529, 2425, 3363, 3926 |
| HpaI | GTTAAC | 1 cut(s) | 697 |
| HpaII | CCGG | 6 cut(s) | 1873, 2593, 4363, 4495, 6025, 6120 |
| HphI | GGTGA | 9 cut(s) | 146, 2120, 2483, 2720, 3259, 3897, 4082, 4316, 5243 |
| Hpy99I | CGWCG | 2 cut(s) | 3300, 5353 |
| HpyCH4IV | ACGT | 5 cut(s) | 51, 1132, 1516, 2360, 5351 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 163, 179, 255, 313, 1584, 4965, 5519 |
| HpySE526I | ACGT | 5 cut(s) | 51, 1132, 1516, 2360, 5351 |
| Hsp92I | GRCGYC | 3 cut(s) | 2360, 5351, 6104 |
| HspAI | GCGC | 4 cut(s) | 1849, 4227, 4643, 5687 |
| KpnI | GGTACC | 2 cut(s) | 40, 2013 |
| Ksp22I | TGATCA | 3 cut(s) | 447, 1753, 4780 |
| KspAI | GTTAAC | 1 cut(s) | 697 |
| LguI | GCTCTTC | 2 cut(s) | 1491, 3947 |
| Lsp1109I | GCAGC | 9 cut(s) | 551, 828, 899, 1149, 1804, 1826, 3376, 4199, 5651 |
| MaeII | ACGT | 5 cut(s) | 51, 1132, 1516, 2360, 5351 |
| MfeI | CAATTG | 3 cut(s) | 1749, 4344, 5198 |
| MhlI | GDGCHC | 5 cut(s) | 372, 619, 2790, 3532, 3959 |
| MlsI | TGGCCA | 2 cut(s) | 258, 5578 |
| MluNI | TGGCCA | 2 cut(s) | 258, 5578 |
| MlyI | GAGTC | 8 cut(s) | 54, 1301, 1304, 1550, 1851, 2245, 3074, 4438 |
| MmeI | TCCRAC | 4 cut(s) | 372, 1884, 1994, 2181 |
| Mox20I | TGGCCA | 2 cut(s) | 258, 5578 |
| Mph1103I | ATGCAT | 2 cut(s) | 114, 4140 |
| MscI | TGGCCA | 2 cut(s) | 258, 5578 |
| MslI | CAYNNNNRTG | 8 cut(s) | 111, 727, 798, 1508, 1688, 2445, 2783, 5243 |
| Msp20I | TGGCCA | 2 cut(s) | 258, 5578 |
| MspA1I | CMGCKG | 4 cut(s) | 542, 982, 1817, 3389 |
| MspCI | CTTAAG | 1 cut(s) | 233 |
| MspI | CCGG | 6 cut(s) | 1873, 2593, 4363, 4495, 6025, 6120 |
| MunI | CAATTG | 3 cut(s) | 1749, 4344, 5198 |
| Mva1269I | GAATGC | 4 cut(s) | 184, 5254, 5816, 5962 |
| MvaI | CCWGG | 8 cut(s) | 41, 260, 737, 1894, 3272, 3788, 4527, 5457 |
| MvnI | CGCG | 2 cut(s) | 1919, 2938 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 163, 179, 255, 313, 1584, 4965, 5519 |
| NciI | CCSGG | 4 cut(s) | 1874, 4363, 4364, 6121 |
| NcoI | CCATGG | 3 cut(s) | 242, 686, 4950 |
| NdeI | CATATG | 2 cut(s) | 108, 4005 |
| NmeAIII | GCCGAG | 1 cut(s) | 1696 |
| NsbI | TGCGCA | 1 cut(s) | 4228 |
| NsiI | ATGCAT | 2 cut(s) | 114, 4140 |
| NspI | RCATGY | 3 cut(s) | 695, 1013, 5195 |
| OliI | CACNNNNGTG | 1 cut(s) | 1688 |
| PaeR7I | CTCGAG | 1 cut(s) | 1309 |
| PagI | TCATGA | 4 cut(s) | 2698, 2778, 3400, 4368 |
| PaqCI | CACCTGC | 2 cut(s) | 3916, 5101 |
| PasI | CCCWGGG | 1 cut(s) | 4526 |
| PciI | ACATGT | 1 cut(s) | 1009 |
| PciSI | GCTCTTC | 2 cut(s) | 1491, 3947 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2311 |
| PctI | GAATGC | 4 cut(s) | 184, 5254, 5816, 5962 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3143 |
| PfoI | TCCNGGA | 2 cut(s) | 3786, 6119 |
| PinAI | ACCGGT | 1 cut(s) | 4494 |
| PleI | GAGTC | 8 cut(s) | 54, 1301, 1303, 1549, 1850, 2244, 3074, 4437 |
| PpsI | GAGTC | 8 cut(s) | 54, 1301, 1303, 1549, 1850, 2244, 3074, 4437 |
| Ppu21I | YACGTR | 2 cut(s) | 52, 1133 |
| PpuMI | RGGWCCY | 2 cut(s) | 4836, 5844 |
| PscI | ACATGT | 1 cut(s) | 1009 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1179, 1950 |
| PshBI | ATTAAT | 2 cut(s) | 3542, 3993 |
| PsiI | TTATAA | 3 cut(s) | 1763, 2981, 5139 |
| Psp5II | RGGWCCY | 2 cut(s) | 4836, 5844 |
| Psp6I | CCWGG | 8 cut(s) | 39, 258, 735, 1892, 3270, 3786, 4525, 5455 |
| PspEI | GGTNACC | 1 cut(s) | 4490 |
| PspFI | CCCAGC | 3 cut(s) | 2299, 2931, 3475 |
| PspGI | CCWGG | 8 cut(s) | 39, 258, 735, 1892, 3270, 3786, 4525, 5455 |
| PspPPI | RGGWCCY | 2 cut(s) | 4836, 5844 |
| PspXI | VCTCGAGB | 1 cut(s) | 1309 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4005, 4037 |
| PstI | CTGCAG | 5 cut(s) | 1254, 1816, 1822, 2064, 5216 |
| PstNI | CAGNNNCTG | 4 cut(s) | 90, 1363, 2627, 2666 |
| PvuII | CAGCTG | 2 cut(s) | 1817, 3389 |
| RseI | CAYNNNNRTG | 8 cut(s) | 111, 727, 798, 1508, 1688, 2445, 2783, 5243 |
| SalI | GTCGAC | 2 cut(s) | 3077, 3297 |
| SapI | GCTCTTC | 2 cut(s) | 1491, 3947 |
| ScaI | AGTACT | 1 cut(s) | 5370 |
| SchI | GAGTC | 8 cut(s) | 54, 1301, 1304, 1550, 1851, 2245, 3074, 4438 |
| SduI | GDGCHC | 5 cut(s) | 372, 619, 2790, 3532, 3959 |
| SfcI | CTRYAG | 5 cut(s) | 1250, 1812, 1818, 2060, 5212 |
| Sfr274I | CTCGAG | 1 cut(s) | 1309 |
| SinI | GGWCC | 5 cut(s) | 622, 733, 1885, 4836, 5844 |
| SlaI | CTCGAG | 1 cut(s) | 1309 |
| SmaI | CCCGGG | 1 cut(s) | 4364 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 111, 727, 798, 1508, 1688, 2445, 2783, 5243 |
| SmlI | CTYRAG | 8 cut(s) | 77, 233, 512, 1309, 1498, 3204, 4553, 5035 |
| SmoI | CTYRAG | 8 cut(s) | 77, 233, 512, 1309, 1498, 3204, 4553, 5035 |
| SnaBI | TACGTA | 1 cut(s) | 1133 |
| SpeI | ACTAGT | 1 cut(s) | 3887 |
| SsiI | CCGC | 9 cut(s) | 542, 982, 1919, 2599, 2936, 3443, 4831, 5003, 5987 |
| SspI | AATATT | 3 cut(s) | 490, 1963, 3665 |
| StyI | CCWWGG | 9 cut(s) | 242, 552, 686, 1031, 1686, 2013, 2378, 4950, 6067 |
| TaiI | ACGT | 5 cut(s) | 54, 1135, 1519, 2363, 5354 |
| TatI | WGTACW | 6 cut(s) | 343, 943, 4856, 4929, 4995, 5368 |
| TauI | GCSGC | 3 cut(s) | 1922, 2938, 3446 |
| TseI | GCWGC | 9 cut(s) | 539, 841, 887, 1162, 1814, 1817, 3389, 4187, 5664 |
| TspGWI | ACGGA | 6 cut(s) | 522, 945, 3020, 3611, 5105, 5298 |
| TspMI | CCCGGG | 1 cut(s) | 4362 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3143 |
| Vha464I | CTTAAG | 1 cut(s) | 233 |
| VneI | GTGCAC | 2 cut(s) | 368, 615 |
| VpaK11BI | GGWCC | 5 cut(s) | 622, 733, 1885, 4836, 5844 |
| VspI | ATTAAT | 2 cut(s) | 3542, 3993 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4530 |
| XbaI | TCTAGA | 1 cut(s) | 667 |
| XceI | RCATGY | 3 cut(s) | 695, 1013, 5195 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1900 |
| XhoI | CTCGAG | 1 cut(s) | 1309 |
| XmaI | CCCGGG | 1 cut(s) | 4362 |
| XmaJI | CCTAGG | 1 cut(s) | 1031 |
| XmiI | GTMKAC | 4 cut(s) | 3078, 3130, 3298, 4706 |
| ZraI | GACGTC | 2 cut(s) | 2361, 5352 |
| ZrmI | AGTACT | 1 cut(s) | 5370 |
| Zsp2I | ATGCAT | 2 cut(s) | 114, 4140 |