AT1G16790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016199
Physical Location & Seq
Forward (+)
5744335 .. 5745259
925 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16790.1

Sequence Viewer

Length: 435 bp
ATGAAGCAACCGGCGACACCAAACGCGGCGGAGGAAACCAAATCAGAACAAAAGCAGAAATCGAAGAAATTCCCAACTCCGACGGAACTAATCTCTCACTACCAGAAACGAGGGCTGGAACCAGCAGAAGCTTCAATAAAGGTCATCGAAGATTTACAAAACGCGCTCGTCCGAGTAGTTTCGTCCTCCAGAAACGCCTCGAGCAAGGATAAGCTTGTAACCGACGCGAGGAAAATCGACGCCATTAACGGGAGGCTTGCCGTCGTCGACGCGAAGCTGGAGACGAAACCTGGATACGTTGAGACTTTCGCGTTAGGGTTAGCTTCTGGTGCGACACTTAACGGAATTAGCGCCGTTTGGCCTCACGTTACCAGAGGCATTGGTCAAATTTGGTCCGCCGTTAGGATCGGGACGGATCCTTCATCTACCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.45

Weight (kDa)

9.56

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16790
fragaria_vesca FvH4_6g36820
malus_domestica MD09G1166600.v1.1
prunus_persica Prupe.3G024300_v2.0.a1
pyrus_communis pycom09g08410 pycom17g15410
rosa_chinensis RchiOBHm_Chr2g0149211
rosa_laevigata RLG00000020383
rosa_multiflora Rmu_co8096518.1_g000001 Rmu_sc0001615.1_g000004
rosa_roxburghii Rroxscaffold_2G00098310
rosa_rugosa Rorug02G0409800
rosa_samantha Rh2AG470300 Rh2CG456200
rosa_wichuraiana Rw2G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AccII CGCG 5 cut(s) 26, 164, 227, 272, 311
AciI CCGC 3 cut(s) 26, 29, 396
AclWI GGATC 3 cut(s) 410, 413, 423
AcsI RAATTY 2 cut(s) 68, 387
AcyI GRCGYC 1 cut(s) 240
AfiI CCNNNNNNNGG 3 cut(s) 228, 249, 402
AgsI TTSAA 1 cut(s) 135
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 131, 214, 277, 323
AluI AGCT 4 cut(s) 131, 214, 277, 323
Alw26I GTCTC 2 cut(s) 275, 296
AlwI GGATC 3 cut(s) 410, 413, 423
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 1 cut(s) 359
ApoI RAATTY 2 cut(s) 68, 387
Asp700I GAANNNNTTC 1 cut(s) 68
AspLEI GCGC 2 cut(s) 166, 353
AspS9I GGNCC 1 cut(s) 393
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 1 cut(s) 393
BamHI GGATCC 1 cut(s) 415
BceAI ACGGC 3 cut(s) 245, 338, 383
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 287
BcoDI GTCTC 2 cut(s) 275, 296
BfoI RGCGCY 1 cut(s) 354
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 2 cut(s) 120, 417
BmrFI CCNGG 1 cut(s) 291
BpmI CTGGAG 2 cut(s) 172, 299
BsaHI GRCGYC 1 cut(s) 240
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 249, 402
Bse118I RCCGGY 1 cut(s) 10
BseBI CCWGG 1 cut(s) 291
BseLI CCNNNNNNNGG 3 cut(s) 228, 249, 402
Bsh1236I CGCG 5 cut(s) 26, 164, 227, 272, 311
BshFI GGCC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 3 cut(s) 228, 249, 402
BsmAI GTCTC 2 cut(s) 275, 296
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 199
Bsp143I GATC 2 cut(s) 405, 415
BspACI CCGC 3 cut(s) 26, 29, 396
BspANI GGCC 1 cut(s) 361
BspFNI CGCG 5 cut(s) 26, 164, 227, 272, 311
BspLI GGNNCC 2 cut(s) 120, 417
BspPI GGATC 3 cut(s) 410, 413, 423
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssMI GATC 2 cut(s) 405, 415
BssNI GRCGYC 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 291
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 258
BstFNI CGCG 5 cut(s) 26, 164, 227, 272, 311
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 2 cut(s) 166, 353
BstKTI GATC 2 cut(s) 408, 418
BstMAI GTCTC 2 cut(s) 275, 296
BstMBI GATC 2 cut(s) 405, 415
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstUI CGCG 5 cut(s) 26, 164, 227, 272, 311
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 2 cut(s) 166, 353
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 393
CseI GACGC 3 cut(s) 233, 248, 278
CviJI RGCY 7 cut(s) 115, 131, 214, 256, 277, 323, 361
CviKI_1 RGCY 7 cut(s) 115, 131, 214, 256, 277, 323, 361
DpnI GATC 2 cut(s) 407, 417
DpnII GATC 2 cut(s) 405, 415
EciI GGCGGA 2 cut(s) 44, 385
Eco47I GGWCC 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 275
FaqI GGGAC 1 cut(s) 424
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GlaI GCGC 2 cut(s) 165, 352
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 2 cut(s) 172, 299
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 1 cut(s) 361
HapII CCGG 1 cut(s) 11
HgaI GACGC 3 cut(s) 233, 248, 278
HhaI GCGC 2 cut(s) 166, 353
Hin1I GRCGYC 1 cut(s) 240
Hin6I GCGC 2 cut(s) 164, 351
HinP1I GCGC 2 cut(s) 164, 351
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 129, 212
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 3 cut(s) 46, 81, 173
Hpy188III TCNNGA 3 cut(s) 189, 409, 432
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 6 cut(s) 85, 227, 242, 266, 269, 272
HpyAV CCTTC 1 cut(s) 429
HpyCH4IV ACGT 2 cut(s) 297, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpySE526I ACGT 2 cut(s) 297, 366
Hsp92I GRCGYC 1 cut(s) 240
HspAI GCGC 2 cut(s) 164, 351
Kzo9I GATC 2 cut(s) 405, 415
MaeII ACGT 2 cut(s) 297, 366
MaeIII GTNAC 2 cut(s) 217, 367
MalI GATC 2 cut(s) 407, 417
MboI GATC 2 cut(s) 405, 415
MboII GAAGA 2 cut(s) 76, 161
MflI RGATCY 1 cut(s) 415
MluCI AATT 3 cut(s) 68, 345, 387
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 8 cut(s) 25, 104, 196, 208, 222, 246, 368, 372
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 2 cut(s) 246, 339
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 5 cut(s) 26, 164, 227, 272, 311
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 2 cut(s) 405, 415
NlaIV GGNNCC 2 cut(s) 120, 417
PaeR7I CTCGAG 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 120, 417
PspPI GGNCC 1 cut(s) 393
PspXI VCTCGAGB 1 cut(s) 199
PsuI RGATCY 1 cut(s) 415
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 246, 339
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 405, 415
Sau96I GGNCC 1 cut(s) 393
ScrFI CCNGG 1 cut(s) 291
SetI ASST 9 cut(s) 133, 144, 216, 279, 292, 300, 325, 369, 431
Sfr274I CTCGAG 1 cut(s) 199
SgrDI CGTCGACG 1 cut(s) 266
SinI GGWCC 1 cut(s) 393
SlaI CTCGAG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 3 cut(s) 68, 345, 387
SsiI CCGC 3 cut(s) 26, 29, 396
StyD4I CCNGG 1 cut(s) 289
TaiI ACGT 2 cut(s) 300, 369
TaqI TCGA 5 cut(s) 62, 147, 200, 237, 267
TasI AATT 3 cut(s) 68, 345, 387
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 246, 339
Tru9I TTAA 2 cut(s) 246, 339
TspDTI ATGAA 2 cut(s) 17, 411
TspGWI ACGGA 3 cut(s) 98, 357, 428
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 2 cut(s) 68, 387
XhoI CTCGAG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.