Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0016199

Physical Location & Seq

Genomic Coordinates Reverse (-)

6437629 .. 6438226

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAAAAGCCAACCTTCAACAAATCCGTCCCTCAAAACCCCAAAATCCCCACAACATCCGCAGCCCCAACCCCACAAAAACCCCAAAAGACAAAGCTGCCAACCGCACAAGAACTCATATCCCACTACGAGTCCCAGGGCCTGGATTCCCAGGAGGCCTCTCTGAAGGTCATAGGTGACCTTCAGACCGCCCTCTATAGGGTCATATCTTCCGGCAGGGGCAGAAAGGACAAGATTTTGGCCGAGACTTCAAGGAAAATTGACAGCACCAACAATAGCCTTGCAATTCTGAACATGAAGGTTGATTCCAAATTTGGAACATTGTTGGGGGTGCCACTAAGGATAACGCTTGATGTTTATTTTTTTTTTTTTTTTTTCTGCCCTTTTGGGTCGGATTTAGTTCAAGGGTTTTTTTGGGTTGTTGATCAAATTTGTAGTGGTAAAAGTTGGAAGGGAAATGCATTTCATTGGTGTAATATTAAATATAATTCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.56

Weight (kDa)

9.38

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16790
fragaria_vesca	FvH4_6g36820
malus_domestica	MD09G1166600.v1.1
prunus_persica	Prupe.3G024300_v2.0.a1
pyrus_communis	pycom09g08410 pycom17g15410
rosa_chinensis	RchiOBHm_Chr2g0149211
rosa_laevigata	RLG00000020383
rosa_multiflora	Rmu_co8096518.1_g000001 Rmu_sc0001615.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098310
rosa_rugosa	Rorug02G0409800
rosa_samantha	Rh2AG470300 Rh2CG456200
rosa_wichuraiana	Rw2G038240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	142
AciI	CCGC	3 cut(s)	60, 105, 189
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	2 cut(s)	311, 429
AcuI	CTGAAG	2 cut(s)	167, 185
AfiI	CCNNNNNNNGG	3 cut(s)	142, 198, 199
AgsI	TTSAA	3 cut(s)	19, 252, 404
AjnI	CCWGG	3 cut(s)	135, 141, 150
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	3 cut(s)	139, 156, 240
ApeKI	GCWGC	2 cut(s)	62, 97
ApoI	RAATTY	2 cut(s)	311, 429
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	74, 84
BciT130I	CCWGG	3 cut(s)	137, 143, 152
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	2 cut(s)	63, 98
BlsI	GCNGC	2 cut(s)	64, 99
Bme1390I	CCNGG	3 cut(s)	137, 143, 152
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	3 cut(s)	137, 143, 152
BsaJI	CCNNGG	3 cut(s)	135, 136, 150
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 198, 199
BseBI	CCWGG	3 cut(s)	137, 143, 152
BseDI	CCNNGG	3 cut(s)	135, 136, 150
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	3 cut(s)	142, 198, 199
BseXI	GCAGC	2 cut(s)	74, 84
BshFI	GGCC	3 cut(s)	141, 158, 242
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	14, 118
BslI	CCNNNNNNNGG	3 cut(s)	142, 198, 199
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	2 cut(s)	14, 118
BsnI	GGCC	3 cut(s)	141, 158, 242
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	3 cut(s)	60, 105, 189
BspANI	GGCC	3 cut(s)	141, 158, 242
BspLI	GGNNCC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	331
BssECI	CCNNGG	3 cut(s)	135, 136, 150
BssMI	GATC	1 cut(s)	424
Bst2UI	CCWGG	3 cut(s)	137, 143, 152
BstDEI	CTNAG	1 cut(s)	338
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	424
BstNI	CCWGG	3 cut(s)	137, 143, 152
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	3 cut(s)	135, 141, 150
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	74, 84
BsuRI	GGCC	3 cut(s)	141, 158, 242
BtsCI	GGATG	1 cut(s)	56
CaiI	CAGNNNCTG	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	139
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	7 cut(s)	10, 65, 97, 141, 158, 242, 279
CviKI_1	RGCY	7 cut(s)	10, 65, 97, 141, 158, 242, 279
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	158
Eco57I	CTGAAG	2 cut(s)	167, 185
Eco91I	GGTNACC	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	176
EcoRII	CCWGG	3 cut(s)	135, 141, 150
EcoT22I	ATGCAT	1 cut(s)	463
FaeI	CATG	1 cut(s)	298
FaiI	YATR	6 cut(s)	119, 173, 198, 206, 296, 486
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	14, 118
FatI	CATG	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	63, 98
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	63, 98
GluI	GCNGC	2 cut(s)	63, 98
HaeIII	GGCC	3 cut(s)	141, 158, 242
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	3 cut(s)	131, 146, 305
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	4 cut(s)	165, 186, 291, 394
HpyAV	CCTTC	5 cut(s)	25, 160, 191, 292, 445
HpyCH4V	TGCA	2 cut(s)	284, 461
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	424
LpnPI	CCDG	8 cut(s)	122, 128, 137, 149, 155, 164, 202, 226
Lsp1109I	GCAGC	2 cut(s)	74, 84
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	1 cut(s)	201
MluCI	AATT	5 cut(s)	258, 285, 311, 429, 487
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	372, 428
MnlI	CCTC	4 cut(s)	42, 148, 169, 203
Mph1103I	ATGCAT	1 cut(s)	463
MseI	TTAA	1 cut(s)	480
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	3 cut(s)	137, 143, 152
MvaI	CCWGG	3 cut(s)	137, 143, 152
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	333
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	463
PasI	CCCWGGG	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	146, 305
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	64, 99
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	135, 141, 150
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	3 cut(s)	135, 141, 150
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	63, 98
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	3 cut(s)	137, 143, 152
SetI	ASST	6 cut(s)	17, 99, 171, 178, 183, 303
SfcI	CTRYAG	1 cut(s)	196
Sse9I	AATT	5 cut(s)	258, 285, 311, 429, 487
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	3 cut(s)	60, 105, 189
SspI	AATATT	1 cut(s)	478
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	135, 141, 150
TasI	AATT	5 cut(s)	258, 285, 311, 429, 487
TfiI	GAWTC	2 cut(s)	146, 305
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	62, 97
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	311, 455
TspGWI	ACGGA	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	142
XapI	RAATTY	2 cut(s)	311, 429
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.