Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016199

Physical Location & Seq

Genomic Coordinates Reverse (-)

13652896 .. 13653348

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1166600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAAAGCCAACCTTCAACAAATCCGTCCCTCAAAACCCCAAAATCCCCACAACATCCACAGCCCCAACCCCACAAAAACCCCAAAAGACAAAGCTGCCAACCGCACAAGAGCTCATATCCCACTACGAGTCCCAGGGCCTGGACTCCCAGGAGGCCTCTCTGAAGGTCATAGGTGACCTTCAGACCGCCCTCTATAGGGTCATATCTTCCGGCAGGGGCAGAAAGGACAGGATTTTGGCCGAGACTTCAAGGAAAATTGACAGCACCAACAATAGCCTTGCAATTCTGAACATGAAGGTTGACTCCAAGCCTGGATTTGGTGAAGCTTTTGGAATTGGGGTTGCTTCTGGGGTCACTTTGAAGGGCATTGAGACTGTTCTTCCTCATGTGATTAGGGGTTTTGGGGAGATTTGGAACACTGTTAGGAGTGCCACCAAGGATAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.22

Weight (kDa)

9.69

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16790
fragaria_vesca	FvH4_6g36820
malus_domestica	MD09G1166600.v1.1
prunus_persica	Prupe.3G024300_v2.0.a1
pyrus_communis	pycom09g08410 pycom17g15410
rosa_chinensis	RchiOBHm_Chr2g0149211
rosa_laevigata	RLG00000020383
rosa_multiflora	Rmu_co8096518.1_g000001 Rmu_sc0001615.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098310
rosa_rugosa	Rorug02G0409800
rosa_samantha	Rh2AG470300 Rh2CG456200
rosa_wichuraiana	Rw2G038240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AciI	CCGC	2 cut(s)	105, 189
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	2 cut(s)	167, 185
AfiI	CCNNNNNNNGG	4 cut(s)	142, 198, 199, 320
AgsI	TTSAA	3 cut(s)	19, 252, 364
AjnI	CCWGG	4 cut(s)	135, 141, 150, 313
AluBI	AGCT	3 cut(s)	97, 115, 329
AluI	AGCT	3 cut(s)	97, 115, 329
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	239, 368
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	3 cut(s)	139, 156, 240
ApeKI	GCWGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	188, 335
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	84
BciT130I	CCWGG	4 cut(s)	137, 143, 152, 315
BcoDI	GTCTC	2 cut(s)	239, 368
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	4 cut(s)	137, 143, 152, 315
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	4 cut(s)	137, 143, 152, 315
BsaJI	CCNNGG	4 cut(s)	135, 136, 150, 438
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 198, 199, 320
BseBI	CCWGG	4 cut(s)	137, 143, 152, 315
BseDI	CCNNGG	4 cut(s)	135, 136, 150, 438
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	4 cut(s)	142, 198, 199, 320
BseXI	GCAGC	1 cut(s)	84
BshFI	GGCC	3 cut(s)	141, 158, 242
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	2 cut(s)	14, 118
BslI	CCNNNNNNNGG	4 cut(s)	142, 198, 199, 320
BsmAI	GTCTC	2 cut(s)	239, 368
BsmFI	GGGAC	2 cut(s)	14, 118
BsnI	GGCC	3 cut(s)	141, 158, 242
Bsp1286I	GDGCHC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	105, 189
BspANI	GGCC	3 cut(s)	141, 158, 242
BssECI	CCNNGG	4 cut(s)	135, 136, 150, 438
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	4 cut(s)	137, 143, 152, 315
Bst4CI	ACNGT	2 cut(s)	379, 424
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	56
BstMAI	GTCTC	2 cut(s)	239, 368
BstNI	CCWGG	4 cut(s)	137, 143, 152, 315
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	4 cut(s)	135, 141, 150, 313
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	141, 158, 242
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	420
CaiI	CAGNNNCTG	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	139
CviAII	CATG	2 cut(s)	295, 389
EaeI	YGGCCR	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	167, 185
Eco91I	GGTNACC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	176
EcoRII	CCWGG	4 cut(s)	135, 141, 150, 313
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	2 cut(s)	298, 392
FaiI	YATR	6 cut(s)	119, 173, 198, 206, 296, 390
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	14, 118
FatI	CATG	2 cut(s)	294, 388
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	141, 158, 242
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	2 cut(s)	298, 392
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	3 cut(s)	131, 146, 305
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	188, 335
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	165, 186, 291
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	5 cut(s)	25, 160, 191, 292, 358
HpyCH4III	ACNGT	2 cut(s)	379, 424
HpyCH4V	TGCA	1 cut(s)	284
Hsp92II	CATG	2 cut(s)	298, 392
Lsp1109I	GCAGC	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	176, 355
MboII	GAAGA	2 cut(s)	201, 374
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	3 cut(s)	258, 285, 336
MlyI	GAGTC	3 cut(s)	140, 140, 299
MnlI	CCTC	5 cut(s)	42, 148, 169, 203, 396
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	4 cut(s)	137, 143, 152, 315
MvaI	CCWGG	4 cut(s)	137, 143, 152, 315
NlaIII	CATG	2 cut(s)	298, 392
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	176, 355
PasI	CCCWGGG	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	3 cut(s)	139, 140, 299
PpsI	GAGTC	3 cut(s)	139, 140, 299
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	4 cut(s)	135, 141, 150, 313
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	4 cut(s)	135, 141, 150, 313
PspPI	GGNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	117
SatI	GCNGC	1 cut(s)	98
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	3 cut(s)	140, 140, 299
ScrFI	CCNGG	4 cut(s)	137, 143, 152, 315
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	8 cut(s)	17, 99, 117, 171, 178, 183, 303, 331
SfcI	CTRYAG	1 cut(s)	196
Sse9I	AATT	3 cut(s)	258, 285, 336
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	105, 189
SstI	GAGCTC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	4 cut(s)	135, 141, 150, 313
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	379, 424
TasI	AATT	3 cut(s)	258, 285, 336
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	176, 355
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	2 cut(s)	176, 355
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	427
Van91I	CCANNNNNTGG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.