pycom17g15410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016199
Physical Location & Seq
Forward (+)
13426718 .. 13427248
531 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g15410.1

Sequence Viewer

Length: 531 bp
ATGGAAAAGCCAACCTTCAACAAATCCATCACTAAAGACCCCAAAACCCCCACTCCCACAACACCACAAAAACCCCAGAAGACAAGGCTGCCAACCTCACAAGAGCTCATACCCCGCTACAAGTCCCAGGGCTTGGACTCCCAGGAGGCCTCCCTGAAGGTCATAGGTGACCTACAGACCACCCTCTTTAAGGTCATATCCTCATGCAGAGGCAGAAAGGACAAGATTTTGGCTGAGACGTCAAGGAAAATTGACAGCACCAACAACATCCTTGCAATTCTGAACATAAAGGTTGACTCAAAGCCTGGATTTGGTGAAGCTTTTGGAATTGGGGTTGCTTCTGGGGTCACTTTGAAGGGCATTGAGACTGTCCTGCCCCATGTGATTAAGGGCTTTGGGGAGATTTGGAACACTGTTAGGAGTGCCATTAAGGATTCTACTTCATATGTATTGTTAAAAAATTTCTGCCCATTTTTCTTTTTTGGAGATTTCTGTGGAATTTTGTTGGAGGGTTCTTTTAGATGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.39

Weight (kDa)

9.44

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16790
fragaria_vesca FvH4_6g36820
malus_domestica MD09G1166600.v1.1
prunus_persica Prupe.3G024300_v2.0.a1
pyrus_communis pycom09g08410 pycom17g15410
rosa_chinensis RchiOBHm_Chr2g0149211
rosa_laevigata RLG00000020383
rosa_multiflora Rmu_co8096518.1_g000001 Rmu_sc0001615.1_g000004
rosa_roxburghii Rroxscaffold_2G00098310
rosa_rugosa Rorug02G0409800
rosa_samantha Rh2AG470300 Rh2CG456200
rosa_wichuraiana Rw2G038240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 133
AciI CCGC 1 cut(s) 115
AcsI RAATTY 2 cut(s) 460, 498
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 239
AfiI CCNNNNNNNGG 3 cut(s) 133, 190, 311
AgsI TTSAA 2 cut(s) 19, 355
AjnI CCWGG 3 cut(s) 126, 141, 304
AluBI AGCT 2 cut(s) 106, 320
AluI AGCT 2 cut(s) 106, 320
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 230, 359
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 460, 498
AsuHPI GGTGA 2 cut(s) 179, 326
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 128, 143, 306
BcoDI GTCTC 2 cut(s) 230, 359
BfmI CTRYAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 3 cut(s) 128, 143, 306
BmrFI CCNGG 3 cut(s) 128, 143, 306
BpiI GAAGAC 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 126, 127, 141
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 190, 311
BseBI CCWGG 3 cut(s) 128, 143, 306
BseDI CCNNGG 3 cut(s) 126, 127, 141
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 3 cut(s) 133, 190, 311
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 75
BshFI GGCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 3 cut(s) 133, 190, 311
BsmAI GTCTC 2 cut(s) 230, 359
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 108
BspACI CCGC 1 cut(s) 115
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 126, 127, 141
BssNI GRCGYC 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 128, 143, 306
Bst4CI ACNGT 2 cut(s) 370, 415
BstACI GRCGYC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 234
BstEII GGTNACC 1 cut(s) 167
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 267
BstMAI GTCTC 2 cut(s) 230, 359
BstNI CCWGG 3 cut(s) 128, 143, 306
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 126, 141, 304
BstSFI CTRYAG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 411
CviAII CATG 2 cut(s) 204, 380
CviJI RGCY 9 cut(s) 10, 88, 106, 132, 149, 233, 304, 320, 393
CviKI_1 RGCY 9 cut(s) 10, 88, 106, 132, 149, 233, 304, 320, 393
DdeI CTNAG 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 106
Eco147I AGGCCT 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 176
Eco91I GGTNACC 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 167
EcoRII CCWGG 3 cut(s) 126, 141, 304
EcoT38I GRGCYC 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 2 cut(s) 207, 383
FaiI YATR 8 cut(s) 110, 164, 197, 205, 287, 381, 445, 447
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 109
FatI CATG 2 cut(s) 203, 379
FauI CCCGC 1 cut(s) 122
FauNDI CATATG 1 cut(s) 445
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 2 cut(s) 207, 383
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 3 cut(s) 137, 296, 434
HphI GGTGA 2 cut(s) 179, 326
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 282
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 25, 151, 349
HpyCH4III ACNGT 2 cut(s) 370, 415
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 207, 275
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 207, 383
Lsp1109I GCAGC 1 cut(s) 75
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 167, 346
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 5 cut(s) 249, 276, 327, 460, 498
MlyI GAGTC 2 cut(s) 131, 290
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 7 cut(s) 106, 139, 160, 194, 203, 211, 502
MseI TTAA 4 cut(s) 189, 387, 429, 455
MspR9I CCNGG 3 cut(s) 128, 143, 306
MvaI CCWGG 3 cut(s) 128, 143, 306
NdeI CATATG 1 cut(s) 445
NlaIII CATG 2 cut(s) 207, 383
NmuCI GTSAC 2 cut(s) 167, 346
PasI CCCWGGG 1 cut(s) 127
PceI AGGCCT 1 cut(s) 149
PfeI GAWTC 1 cut(s) 434
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 2 cut(s) 131, 290
PpsI GAGTC 2 cut(s) 131, 290
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 3 cut(s) 126, 141, 304
PspEI GGTNACC 1 cut(s) 167
PspGI CCWGG 3 cut(s) 126, 141, 304
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 189, 387, 429, 455
SatI GCNGC 1 cut(s) 89
SchI GAGTC 2 cut(s) 131, 290
ScrFI CCNGG 3 cut(s) 128, 143, 306
SduI GDGCHC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 173
Sse9I AATT 5 cut(s) 249, 276, 327, 460, 498
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 1 cut(s) 115
SstI GAGCTC 1 cut(s) 108
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 3 cut(s) 126, 141, 304
TaaI ACNGT 2 cut(s) 370, 415
TaiI ACGT 1 cut(s) 242
TasI AATT 5 cut(s) 249, 276, 327, 460, 498
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 4 cut(s) 189, 387, 429, 455
Tru9I TTAA 4 cut(s) 189, 387, 429, 455
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 2 cut(s) 167, 346
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 2 cut(s) 167, 346
TspDTI ATGAA 1 cut(s) 432
TspRI CASTG 1 cut(s) 418
Van91I CCANNNNNTGG 1 cut(s) 133
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 2 cut(s) 460, 498
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.