AT1G17550

phosphatase 2C

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
6034270 .. 6037398
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17550.2

Sequence Viewer

Length: 1536 bp
ATGGAAGAGATTTCACCTGCAGTTGCACTTACTTTGGGTTTAGCTAATACGATGTGTGACTCTGGAATCTCATCTACTTTCGATATCTCCGAGCTGGAGAATGTTACTGATGCAGCTGACATGTTGTGTAATCAGAAAAGACAAAGATATAGTAATGGAGTGGTGGATTGTATTATGGGAAGTGTTTCAGAAGAGAAGACTTTATCTGAAGTGAGAAGTTTGTCTTCTGATTTTAGTGTAACTGTCCAGGAATCAGAAGAAGATGAGCCATTAGTATCTGATGCGACTATTATTAGCGAAGGTTTAATAGTTGTGGACGCTAGGTCTGAGATAAGTTTGCCAGATACAGTTGAAACTGATAACGGGCGAGTTCTTGCTACGGCCATTATCCTAAACGAGACAACCATAGAACAGGTTCCCACTGCAGAAGTCCTTATTGCGAGTCTGAATCACGATGTGAATATGGAGGTGGCAACTTCTGAGGTAGTCATTAGGTTACCTGAAGAAAATCCTAATGTAGCAAGAGGAAGCAGGAGTGTTTATGAACTAGAGTGTATACCTCTTTGGGGCACGATTTCAATTTGCGGTGGAAGATCTGAAATGGAGGATGCTGTTAGAGCTTTACCTCATTTTCTCAAAATACCCATCAAAATGCTTATGGGGGATCATGAAGGGATGAGTCCAAGTCTCCCATATCTCACTAGTCACTTCTTTGGTGTATATGATGGCCACGGAGGCGCTCAGGTTGCTGACTATTGCCATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAAGAGGAATTGTGTAGGAGGAACACTGGCGAGGGTAGGCAGGTCCAGTGGGAGAAAGTCTTTGTAGATTGTTACCTAAAAGTCGATGATGAGGTTAAAGGGAAAATCAACAGACCTGTTGTTGGTTCTTCTGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTTGGATCGACTGCTGTGGTTGCTTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGACTCAAGAGCAGTTTTACTCCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCAGATAGAGAGGATGAGTATGCACGAATAGAGAAAGCTGGAGGAAAAGTTATACAATGGCAAGGCGCTCGTGTTTCTGGCGTTCTTGCCATGTCCAGGTCCATCGGTGATCAATATCTGGAGCCATTTGTAATACCAGATCCCGAAGTGACGTTTATGCCACGAGCTAGAGAAGACGAGTGTCTAATATTGGCCAGTGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGCGATTTTGCGAGGAGGCGGATCTTGGCTTGGCACAAGAAGAATGGAGCATTGCCTTTAGCTGAGAGAGGTGTAGGAGAAGACCAAGCGTGTCAAGCTGCGGCTGAATATCTCTCCAAACTCGCTATTCAAATGGGAAGCAAAGACAATATCTCAATCATAGTGATCGACTTGAAAGCTCAAAGAAAGTTCAAGACCAGATCTTGA

Protein Analysis

511

Amino Acids

56.06

Weight (kDa)

4.75

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 230 - 494 1.1e-60 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
Acc36I ACCTGC 2 cut(s) 25, 835
AccI GTMKAC 1 cut(s) 556
AciI CCGC 3 cut(s) 585, 1348, 1430
AclWI GGATC 4 cut(s) 672, 985, 1229, 1358
AcoI YGGCCR 3 cut(s) 381, 727, 1287
AcuI CTGAAG 3 cut(s) 228, 522, 807
AdeI CACNNNGTG 1 cut(s) 457
AfiI CCNNNNNNNGG 3 cut(s) 566, 926, 1191
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 6 cut(s) 353, 579, 953, 1460, 1504, 1522
AhdI GACNNNNNGTC 1 cut(s) 322
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 2 cut(s) 246, 1190
Alw26I GTCTC 3 cut(s) 392, 692, 1027
AlwI GGATC 4 cut(s) 672, 985, 1229, 1358
AoxI GGCC 3 cut(s) 381, 727, 1287
ApeKI GCWGC 2 cut(s) 113, 1427
Asp700I GAANNNNTTC 2 cut(s) 184, 414
AspLEI GCGC 2 cut(s) 740, 1163
AspS9I GGNCC 2 cut(s) 847, 1194
AsuHPI GGTGA 3 cut(s) 6, 1046, 1214
AvaII GGWCC 2 cut(s) 847, 1194
BaeGI GKGCMC 1 cut(s) 572
BalI TGGCCA 2 cut(s) 729, 1289
BauI CACGAG 2 cut(s) 1164, 1257
BbsI GAAGAC 4 cut(s) 203, 216, 1275, 1416
BbvI GCAGC 2 cut(s) 125, 1414
BccI CCATC 5 cut(s) 653, 719, 937, 1205, 1289
BceAI ACGGC 1 cut(s) 396
BcgI CGANNNNNNTGC 2 cut(s) 1145, 1179
BciT130I CCWGG 2 cut(s) 248, 1192
BclI TGATCA 2 cut(s) 1087, 1204
BcoDI GTCTC 3 cut(s) 392, 692, 1027
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 4 cut(s) 321, 548, 702, 1263
BfmI CTRYAG 2 cut(s) 18, 423
BfoI RGCGCY 2 cut(s) 741, 1164
BfuAI ACCTGC 2 cut(s) 25, 835
BglI GCCNNNNNGGC 1 cut(s) 735
BglII AGATCT 2 cut(s) 593, 1529
BisI GCNGC 3 cut(s) 114, 1428, 1431
BlsI GCNGC 3 cut(s) 115, 1429, 1432
Bme1390I CCNGG 2 cut(s) 248, 1192
Bme18I GGWCC 2 cut(s) 847, 1194
BmeRI GACNNNNNGTC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 847, 1194
BmiI GGNNCC 2 cut(s) 417, 1218
BmrFI CCNGG 2 cut(s) 248, 1192
BmsI GCATC 3 cut(s) 100, 271, 598
BoxI GACNNNNGTC 1 cut(s) 1275
BpiI GAAGAC 4 cut(s) 203, 216, 1275, 1416
BpmI CTGGAG 3 cut(s) 116, 1155, 1235
Bpu10I CCTNAGC 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 1024
BsaBI GATNNNNATC 1 cut(s) 1209
BsaJI CCNNGG 2 cut(s) 730, 1057
BsaXI ACNNNNNCTCC 2 cut(s) 1128, 1158
Bsc4I CCNNNNNNNGG 3 cut(s) 566, 926, 1191
Bse1I ACTGG 3 cut(s) 835, 850, 1290
Bse3DI GCAATG 1 cut(s) 1379
Bse8I GATNNNNATC 1 cut(s) 1209
BseBI CCWGG 2 cut(s) 248, 1192
BseDI CCNNGG 2 cut(s) 730, 1057
BseGI GGATG 4 cut(s) 613, 681, 948, 1114
BseJI GATNNNNATC 1 cut(s) 1209
BseLI CCNNNNNNNGG 3 cut(s) 566, 926, 1191
BseMI GCAATG 1 cut(s) 1379
BseMII CTCAG 4 cut(s) 318, 471, 755, 1383
BseNI ACTGG 3 cut(s) 835, 850, 1290
BseRI GAGGAG 1 cut(s) 1357
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 2 cut(s) 125, 1414
BshFI GGCC 3 cut(s) 383, 729, 1289
BslFI GGGAC 1 cut(s) 1319
BslI CCNNNNNNNGG 3 cut(s) 566, 926, 1191
BsmAI GTCTC 3 cut(s) 392, 692, 1027
BsmFI GGGAC 1 cut(s) 1319
BsnI GGCC 3 cut(s) 383, 729, 1289
Bsp1286I GDGCHC 1 cut(s) 572
Bsp143I GATC 9 cut(s) 593, 664, 977, 1087, 1204, 1234, 1350, 1494, 1529
BspACI CCGC 3 cut(s) 585, 1348, 1430
BspANI GGCC 3 cut(s) 383, 729, 1289
BspCNI CTCAG 4 cut(s) 319, 472, 754, 1384
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 417, 1218
BspMAI CTGCAG 2 cut(s) 22, 427
BspMI ACCTGC 2 cut(s) 25, 835
BspPI GGATC 4 cut(s) 672, 985, 1229, 1358
BsrDI GCAATG 1 cut(s) 1379
BsrI ACTGG 3 cut(s) 835, 850, 1290
BssECI CCNNGG 2 cut(s) 730, 1057
BssMI GATC 9 cut(s) 593, 664, 977, 1087, 1204, 1234, 1350, 1494, 1529
BssNAI GTATAC 1 cut(s) 557
BssSI CACGAG 2 cut(s) 1164, 1257
Bst1107I GTATAC 1 cut(s) 557
Bst2BI CACGAG 2 cut(s) 1164, 1257
Bst2UI CCWGG 2 cut(s) 248, 1192
Bst4CI ACNGT 4 cut(s) 244, 349, 973, 1031
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 1330
BstDEI CTNAG 4 cut(s) 327, 480, 741, 1392
BstDSI CCRYGG 1 cut(s) 730
BstEII GGTNACC 1 cut(s) 495
BstF5I GGATG 4 cut(s) 613, 681, 948, 1114
BstH2I RGCGCY 2 cut(s) 741, 1164
BstHHI GCGC 2 cut(s) 740, 1163
BstKTI GATC 9 cut(s) 596, 667, 980, 1090, 1207, 1237, 1353, 1497, 1532
BstMAI GTCTC 3 cut(s) 392, 692, 1027
BstMBI GATC 9 cut(s) 593, 664, 977, 1087, 1204, 1234, 1350, 1494, 1529
BstMWI GCNNNNNNNGC 5 cut(s) 617, 735, 746, 992, 1424
BstNI CCWGG 2 cut(s) 248, 1192
BstNSI RCATGY 1 cut(s) 124
BstPAI GACNNNNGTC 1 cut(s) 1275
BstPI GGTNACC 1 cut(s) 495
BstSCI CCNGG 2 cut(s) 246, 1190
BstSFI CTRYAG 2 cut(s) 18, 423
BstSLI GKGCMC 1 cut(s) 572
BstV1I GCAGC 2 cut(s) 125, 1414
BstV2I GAAGAC 4 cut(s) 203, 216, 1275, 1416
BstX2I RGATCY 4 cut(s) 593, 1234, 1350, 1529
BstYI RGATCY 4 cut(s) 593, 1234, 1350, 1529
BstZ17I GTATAC 1 cut(s) 557
BsuRI GGCC 3 cut(s) 383, 729, 1289
BtgI CCRYGG 1 cut(s) 730
BtgZI GCGATG 1 cut(s) 993
BtsCI GGATG 4 cut(s) 613, 681, 948, 1114
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 4 cut(s) 420, 828, 857, 1297
BveI ACCTGC 2 cut(s) 25, 835
Cac8I GCNNGC 1 cut(s) 1330
CciI TCATGA 1 cut(s) 667
CfoI GCGC 2 cut(s) 740, 1163
Cfr13I GGNCC 2 cut(s) 847, 1194
CseI GACGC 1 cut(s) 326
CviAII CATG 5 cut(s) 121, 668, 761, 1072, 1186
DdeI CTNAG 4 cut(s) 327, 480, 741, 1392
DpnI GATC 9 cut(s) 595, 666, 979, 1089, 1206, 1236, 1352, 1496, 1531
DpnII GATC 9 cut(s) 593, 664, 977, 1087, 1204, 1234, 1350, 1494, 1529
DraIII CACNNNGTG 1 cut(s) 457
DriI GACNNNNNGTC 1 cut(s) 322
EaeI YGGCCR 3 cut(s) 381, 727, 1287
Eam1104I CTCTTC 1 cut(s) 186
Eam1105I GACNNNNNGTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 1 cut(s) 1363
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 847, 1194
Eco57I CTGAAG 3 cut(s) 228, 522, 807
Eco91I GGTNACC 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 495
EcoRII CCWGG 2 cut(s) 246, 1190
EcoRV GATATC 1 cut(s) 85
FaeI CATG 5 cut(s) 124, 671, 764, 1075, 1189
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FaqI GGGAC 1 cut(s) 1319
FatI CATG 5 cut(s) 120, 667, 760, 1071, 1185
FbaI TGATCA 2 cut(s) 1087, 1204
FblI GTMKAC 1 cut(s) 556
Fnu4HI GCNGC 3 cut(s) 114, 1428, 1431
FokI GGATG 4 cut(s) 620, 688, 955, 1121
Fsp4HI GCNGC 3 cut(s) 114, 1428, 1431
FspBI CTAG 4 cut(s) 321, 548, 702, 1263
GlaI GCGC 2 cut(s) 739, 1162
GluI GCNGC 3 cut(s) 114, 1428, 1431
GsuI CTGGAG 3 cut(s) 116, 1155, 1235
HaeII RGCGCY 2 cut(s) 741, 1164
HaeIII GGCC 3 cut(s) 383, 729, 1289
HgaI GACGC 1 cut(s) 326
HhaI GCGC 2 cut(s) 740, 1163
Hin1II CATG 5 cut(s) 124, 671, 764, 1075, 1189
Hin6I GCGC 2 cut(s) 738, 1161
HinP1I GCGC 2 cut(s) 738, 1161
HindIII AAGCTT 1 cut(s) 1326
HinfI GANTC 9 cut(s) 59, 66, 251, 442, 448, 679, 768, 1037, 1067
HphI GGTGA 3 cut(s) 6, 1046, 1214
Hpy166II GTNNAC 2 cut(s) 316, 557
Hpy188III TCNNGA 9 cut(s) 63, 452, 668, 950, 1041, 1214, 1238, 1522, 1533
Hpy8I GTNNAC 2 cut(s) 316, 557
HpyAV CCTTC 2 cut(s) 293, 665
HpyCH4III ACNGT 4 cut(s) 244, 349, 973, 1031
HpyCH4IV ACGT 2 cut(s) 1247, 1308
HpyCH4V TGCA 5 cut(s) 20, 26, 113, 425, 1118
HpyF10VI GCNNNNNNNGC 5 cut(s) 617, 735, 746, 992, 1424
HpyF3I CTNAG 4 cut(s) 327, 480, 741, 1392
HpySE526I ACGT 2 cut(s) 1247, 1308
Hsp92II CATG 5 cut(s) 124, 671, 764, 1075, 1189
HspAI GCGC 2 cut(s) 738, 1161
Ksp22I TGATCA 2 cut(s) 1087, 1204
Kzo9I GATC 9 cut(s) 593, 664, 977, 1087, 1204, 1234, 1350, 1494, 1529
LmnI GCTCC 2 cut(s) 1216, 1376
Lsp1109I GCAGC 2 cut(s) 125, 1414
LweI GCATC 3 cut(s) 100, 271, 598
MaeI CTAG 4 cut(s) 321, 548, 702, 1263
MaeII ACGT 2 cut(s) 1247, 1308
MaeIII GTNAC 9 cut(s) 56, 103, 238, 495, 704, 875, 1034, 1243, 1316
MalI GATC 9 cut(s) 595, 666, 979, 1089, 1206, 1236, 1352, 1496, 1531
MboI GATC 9 cut(s) 593, 664, 977, 1087, 1204, 1234, 1350, 1494, 1529
MflI RGATCY 4 cut(s) 593, 1234, 1350, 1529
MhlI GDGCHC 1 cut(s) 572
MlsI TGGCCA 2 cut(s) 729, 1289
MluCI AATT 2 cut(s) 579, 812
MluNI TGGCCA 2 cut(s) 729, 1289
MlyI GAGTC 5 cut(s) 53, 451, 688, 1031, 1061
MmeI TCCRAC 1 cut(s) 955
Mox20I TGGCCA 2 cut(s) 729, 1289
MroXI GAANNNNTTC 2 cut(s) 184, 414
MscI TGGCCA 2 cut(s) 729, 1289
MseI TTAA 3 cut(s) 305, 804, 900
MslI CAYNNNNRTG 1 cut(s) 650
Msp20I TGGCCA 2 cut(s) 729, 1289
MspA1I CMGCKG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 248, 1192
MvaI CCWGG 2 cut(s) 248, 1192
MwoI GCNNNNNNNGC 5 cut(s) 617, 735, 746, 992, 1424
NdeII GATC 9 cut(s) 593, 664, 977, 1087, 1204, 1234, 1350, 1494, 1529
NlaIII CATG 5 cut(s) 124, 671, 764, 1075, 1189
NlaIV GGNNCC 2 cut(s) 417, 1218
NmuCI GTSAC 4 cut(s) 56, 704, 1034, 1243
NspI RCATGY 1 cut(s) 124
PagI TCATGA 1 cut(s) 667
PaqCI CACCTGC 1 cut(s) 25
PciI ACATGT 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 2 cut(s) 184, 414
PfeI GAWTC 4 cut(s) 66, 251, 448, 768
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 3 cut(s) 115, 1429, 1432
PleI GAGTC 5 cut(s) 53, 450, 687, 1031, 1061
PpsI GAGTC 5 cut(s) 53, 450, 687, 1031, 1061
PscI ACATGT 1 cut(s) 120
PshAI GACNNNNGTC 1 cut(s) 1275
Psp6I CCWGG 2 cut(s) 246, 1190
PspEI GGTNACC 1 cut(s) 495
PspGI CCWGG 2 cut(s) 246, 1190
PspN4I GGNNCC 2 cut(s) 417, 1218
PspPI GGNCC 2 cut(s) 847, 1194
PstI CTGCAG 2 cut(s) 22, 427
PsuI RGATCY 4 cut(s) 593, 1234, 1350, 1529
PvuII CAGCTG 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 650
SaqAI TTAA 3 cut(s) 305, 804, 900
SatI GCNGC 3 cut(s) 114, 1428, 1431
Sau3AI GATC 9 cut(s) 593, 664, 977, 1087, 1204, 1234, 1350, 1494, 1529
Sau96I GGNCC 2 cut(s) 847, 1194
SchI GAGTC 5 cut(s) 53, 451, 688, 1031, 1061
ScrFI CCNGG 2 cut(s) 248, 1192
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 3 cut(s) 100, 271, 598
SfcI CTRYAG 2 cut(s) 18, 423
SinI GGWCC 2 cut(s) 847, 1194
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 1039
SmoI CTYRAG 1 cut(s) 1039
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 2 cut(s) 579, 812
SsiI CCGC 3 cut(s) 585, 1348, 1430
SspI AATATT 1 cut(s) 1284
SspMI CTAG 4 cut(s) 321, 548, 702, 1263
StyD4I CCNGG 2 cut(s) 246, 1190
TaaI ACNGT 4 cut(s) 244, 349, 973, 1031
TaiI ACGT 2 cut(s) 1250, 1311
TaqI TCGA 5 cut(s) 81, 795, 888, 980, 1497
TasI AATT 2 cut(s) 579, 812
TauI GCSGC 1 cut(s) 1433
TfiI GAWTC 4 cut(s) 66, 251, 448, 768
Tru1I TTAA 3 cut(s) 305, 804, 900
Tru9I TTAA 3 cut(s) 305, 804, 900
TscAI CASTG 4 cut(s) 427, 835, 857, 1297
TseFI GTSAC 4 cut(s) 56, 704, 1034, 1243
TseI GCWGC 2 cut(s) 113, 1427
Tsp45I GTSAC 4 cut(s) 56, 704, 1034, 1243
TspDTI ATGAA 3 cut(s) 558, 684, 996
TspGWI ACGGA 2 cut(s) 747, 814
TspRI CASTG 4 cut(s) 427, 835, 857, 1297
VpaK11BI GGWCC 2 cut(s) 847, 1194
XceI RCATGY 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 556
XmnI GAANNNNTTC 2 cut(s) 184, 414
XspI CTAG 4 cut(s) 321, 548, 702, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.