pycom09g10440

phosphatase 2c

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
8551248 .. 8553832
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10440.3

Sequence Viewer

Length: 1635 bp
ATGTCAAATGTTACAAAGATAAGGAGATTGATGGAAGACATGTCTCCAGCAGTTGCAGTGACTCTTAGTTTAGGTAATGCTATATGTGATAGTGCCGGAATTGGAGCCAATGTGGAGTTCACATGGCTAAAGCTTGTAACAGACTCGGGAAACTTGTCTTCAGATTCCTCTAAGGTGGTTCCTTTAGAGCCAGTCGCTTGCAGTAAAGGAAGTTCCGATGATATTGAAAGCAAAGTTAGTGTGGTTCCCGTGCCATCACAAGACGATGATGGTGGAAACACTTCTGTTGCTAATAATGTCATGGTTCAAGAAAGTGAGGAAGTGCAAATCTTAGCCTCTAGATATGATACTAATGGAATTGTTAGTGAGGAATTGCTGAAGTTAGAGATGGGGTCTGCGAAAAGCTTGCCAGATGATGTGGAGATTGGAAAAATTAGTGAAGGGAAGATTGTTGCAAAAGCTATTGTCTTGGTAGAATCGGCTGTTGGGAAAATGGCTTCTGGGGTTGTTGCAGCAGTAAGCCCTGCTTCTGAGTTATCAGATAAATCTGAATTATCAACCTCTATGGTACTTATCCATGCAAATAGTGAGAAGATTGTCAGTAAAGCAGGCAACCGGAGTGTTTTTGAGCTCAACTGTATTCCCCTCTGGGGTTCTGTATCAATTTGTGGAAGACGACCAGAAATGGAAGATGCATTTGCTGCTGTTCCTTGTTGTATCAATATTCCAATCAAAATGCTTGTCGGTAATCAAGTGTATAATGGAATGAGCCAAAGTTTGACCCACCTAACCAGTCACTTTTTTGGCATTTATGATGGCCACGGCGGCCCTCAGGTTGCTAACTTTTGTAGTGAGCGGCTCCATTTGGCTTTGGCCGAAGAGCTTGGAGTCATTAAGGATGACTCTGGTGATGGGATTACGGAAGAAACTCAGCAGTTGCATTGGGAGAAAGCATTCACTAATTGTTTTCAAAGGGTTGATGATGAGATTGGAGGAAAAGTAAGCAGAGGCATCATTGAAAGCAATGCAGATGCTTCCGAAGTTAGTTTTGAGCCTGTTGCCCCGGAAACTGTTGGGTCTACAGCTGTGGTTGCATTAGTTTCGTCATCCCATATTATAGTTGCAAATTGTGGTGATTCAAGAGCAGTTCTATGTCGTGGCAAACAAGCGATACCATTATCAGTCGATCATAAACCAAACAGAGAAGACGAATATGAAAGGATTGAGGCATCTGGTGGCAAGGTAATACAGTGGAATGGGCACCGTGTTTTTGGAGTTCTTGCAATGTCAAGGTCCATTGGGGATAGATATTTGAAACCATGGATAATTCCAGAACCAGAAGTCATGGTTGTCCCTCGAGCTAGAGATGACGAATGCCTTATTTTAGCTAGTGATGGTCTATGGGATGTTATGACGAATGAGGAAGCTTGTGATGTGGCTCGAAAACGCATTCTGCTATGGCACAAAAAGAACGGGGCTACACCTCTTGCGGAAAGGGGAACAGGAGTTGATCGTTCAGCTGGGGAAGCTGCTGCCTACCTTTCAACCCTTGCCCTCCAGAAGGGAAGCAAGGACAACATCTCTGTGGTTGTGGTGGACTTGAAAGCTCAAAGGAAGTTCAAGAGCAAATCCTAA

Protein Analysis

545

Amino Acids

58.24

Weight (kDa)

5.06

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1260
AccBSI CCGCTC 1 cut(s) 856
AccI GTMKAC 1 cut(s) 1079
AciI CCGC 3 cut(s) 825, 856, 1490
AcoI YGGCCR 2 cut(s) 817, 873
AcuI CTGAAG 2 cut(s) 144, 398
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 650, 1561
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 9 cut(s) 227, 308, 971, 1019, 1140, 1315, 1545, 1603, 1621
AjuI GAANNNNNNNTTGG 4 cut(s) 101, 133, 468, 500
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 1 cut(s) 48
Ama87I CYCGRG 2 cut(s) 145, 1356
AoxI GGCC 3 cut(s) 817, 826, 873
ApeKI GCWGC 4 cut(s) 512, 701, 1529, 1532
ArsI GACNNNNNNTTYG 2 cut(s) 726, 758
Asp700I GAANNNNTTC 2 cut(s) 280, 953
AspS9I GGNCC 2 cut(s) 827, 1293
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 2 cut(s) 920, 1145
AvaI CYCGRG 2 cut(s) 145, 1356
AvaII GGWCC 1 cut(s) 1293
AxyI CCTNAGG 1 cut(s) 831
BaeGI GKGCMC 1 cut(s) 1263
BalI TGGCCA 1 cut(s) 819
BanI GGYRCC 1 cut(s) 1260
BanII GRGCYC 1 cut(s) 633
BbsI GAAGAC 4 cut(s) 42, 150, 679, 1212
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 4 cut(s) 524, 688, 1516, 1519
BccI CCATC 7 cut(s) 25, 262, 263, 382, 809, 905, 1388
BceAI ACGGC 1 cut(s) 838
BcgI CGANNNNNNTGC 4 cut(s) 388, 422, 1083, 1117
BcnI CCSGG 1 cut(s) 1064
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 3 cut(s) 339, 1362, 1389
BfmI CTRYAG 1 cut(s) 1080
BglI GCCNNNNNGGC 1 cut(s) 825
BisI GCNGC 6 cut(s) 513, 702, 826, 857, 1530, 1533
BlsI GCNGC 6 cut(s) 514, 703, 827, 858, 1531, 1534
Bme1390I CCNGG 1 cut(s) 1064
Bme18I GGWCC 1 cut(s) 1293
BmeT110I CYCGRG 2 cut(s) 145, 1356
BmgT120I GGNCC 2 cut(s) 827, 1293
BmiI GGNNCC 5 cut(s) 106, 180, 246, 860, 1262
BmrFI CCNGG 1 cut(s) 1064
BmsI GCATC 4 cut(s) 682, 1020, 1021, 1238
BpiI GAAGAC 4 cut(s) 42, 150, 679, 1212
BpmI CTGGAG 2 cut(s) 30, 1541
BpuMI CCSGG 1 cut(s) 1064
BsaJI CCNNGG 3 cut(s) 820, 1062, 1319
BsaWI WCCGGW 1 cut(s) 615
BsaXI ACNNNNNCTCC 4 cut(s) 96, 126, 984, 1014
Bsc4I CCNNNNNNNGG 2 cut(s) 650, 1561
Bse1I ACTGG 2 cut(s) 191, 792
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 2 cut(s) 1030, 1290
BseDI CCNNGG 3 cut(s) 820, 1062, 1319
BseGI GGATG 3 cut(s) 904, 1106, 1411
BseLI CCNNNNNNNGG 2 cut(s) 650, 1561
BseMI GCAATG 2 cut(s) 1030, 1290
BseMII CTCAG 3 cut(s) 522, 845, 944
BseNI ACTGG 2 cut(s) 191, 792
BseSI GKGCMC 1 cut(s) 1263
BseXI GCAGC 4 cut(s) 524, 688, 1516, 1519
BseYI CCCAGC 1 cut(s) 1520
BshFI GGCC 3 cut(s) 819, 828, 875
BshNI GGYRCC 1 cut(s) 1260
BsiHKAI GWGCWC 1 cut(s) 633
BsiHKCI CYCGRG 2 cut(s) 145, 1356
BsiSI CCGG 3 cut(s) 96, 616, 1064
BslFI GGGAC 1 cut(s) 1337
BslI CCNNNNNNNGG 2 cut(s) 650, 1561
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 1337
BsmI GAATGC 3 cut(s) 953, 1379, 1449
BsnI GGCC 3 cut(s) 819, 828, 875
BsoBI CYCGRG 2 cut(s) 145, 1356
Bsp1286I GDGCHC 2 cut(s) 633, 1263
Bsp143I GATC 2 cut(s) 1186, 1510
Bsp19I CCATGG 1 cut(s) 1319
BspACI CCGC 3 cut(s) 825, 856, 1490
BspANI GGCC 3 cut(s) 819, 828, 875
BspCNI CTCAG 3 cut(s) 523, 844, 943
BspLI GGNNCC 5 cut(s) 106, 180, 246, 860, 1262
BspQI GCTCTTC 1 cut(s) 873
BspT107I GGYRCC 1 cut(s) 1260
BsrBI CCGCTC 1 cut(s) 856
BsrDI GCAATG 2 cut(s) 1030, 1290
BsrI ACTGG 2 cut(s) 191, 792
BssECI CCNNGG 3 cut(s) 820, 1062, 1319
BssMI GATC 2 cut(s) 1186, 1510
BssT1I CCWWGG 1 cut(s) 1319
Bst4CI ACNGT 4 cut(s) 638, 1072, 1251, 1265
Bst6I CTCTTC 1 cut(s) 873
BstAPI GCANNNNNTGC 1 cut(s) 701
BstC8I GCNNGC 3 cut(s) 199, 407, 610
BstDEI CTNAG 6 cut(s) 65, 171, 331, 531, 831, 930
BstDSI CCRYGG 2 cut(s) 820, 1319
BstENI CCTNNNNNAGG 1 cut(s) 1559
BstF5I GGATG 3 cut(s) 904, 1106, 1411
BstKTI GATC 2 cut(s) 1189, 1513
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 2 cut(s) 1186, 1510
BstMWI GCNNNNNNNGC 4 cut(s) 701, 825, 1091, 1526
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 1062
BstSFI CTRYAG 1 cut(s) 1080
BstSLI GKGCMC 1 cut(s) 1263
BstV1I GCAGC 4 cut(s) 524, 688, 1516, 1519
BstV2I GAAGAC 4 cut(s) 42, 150, 679, 1212
Bsu36I CCTNAGG 1 cut(s) 831
BsuRI GGCC 3 cut(s) 819, 828, 875
BtgI CCRYGG 2 cut(s) 820, 1319
BtsCI GGATG 3 cut(s) 904, 1106, 1411
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 1256
Cac8I GCNNGC 3 cut(s) 199, 407, 610
Cfr13I GGNCC 2 cut(s) 827, 1293
Csp6I GTAC 1 cut(s) 569
CviAII CATG 6 cut(s) 40, 123, 301, 578, 1320, 1345
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 6 cut(s) 65, 171, 331, 531, 831, 930
DpnI GATC 2 cut(s) 1188, 1512
DpnII GATC 2 cut(s) 1186, 1510
EaeI YGGCCR 2 cut(s) 817, 873
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Ecl136II GAGCTC 1 cut(s) 631
Eco130I CCWWGG 1 cut(s) 1319
Eco24I GRGCYC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 1293
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 2 cut(s) 144, 398
Eco81I CCTNAGG 1 cut(s) 831
Eco88I CYCGRG 2 cut(s) 145, 1356
EcoICRI GAGCTC 1 cut(s) 631
EcoNI CCTNNNNNAGG 1 cut(s) 1559
EcoT14I CCWWGG 1 cut(s) 1319
EcoT22I ATGCAT 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 1319
FaeI CATG 6 cut(s) 43, 126, 304, 581, 1323, 1348
FalI AAGNNNNNCTT 2 cut(s) 511, 543
FaqI GGGAC 1 cut(s) 1337
FatI CATG 6 cut(s) 39, 122, 300, 577, 1319, 1344
FblI GTMKAC 1 cut(s) 1079
Fnu4HI GCNGC 6 cut(s) 513, 702, 826, 857, 1530, 1533
FokI GGATG 3 cut(s) 911, 1093, 1418
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 6 cut(s) 513, 702, 826, 857, 1530, 1533
FspBI CTAG 3 cut(s) 339, 1362, 1389
GluI GCNGC 6 cut(s) 513, 702, 826, 857, 1530, 1533
GsaI CCCAGC 1 cut(s) 1524
GsuI CTGGAG 2 cut(s) 30, 1541
HaeIII GGCC 3 cut(s) 819, 828, 875
HapII CCGG 3 cut(s) 96, 616, 1064
Hin1II CATG 6 cut(s) 43, 126, 304, 581, 1323, 1348
HindIII AAGCTT 3 cut(s) 131, 403, 1425
HinfI GANTC 7 cut(s) 61, 143, 164, 476, 888, 902, 1136
HpaII CCGG 3 cut(s) 96, 616, 1064
HphI GGTGA 2 cut(s) 920, 1145
Hpy166II GTNNAC 3 cut(s) 120, 1080, 1597
Hpy188I TCNGA 6 cut(s) 163, 217, 532, 541, 550, 1039
Hpy188III TCNNGA 7 cut(s) 147, 308, 339, 1140, 1331, 1558, 1621
Hpy8I GTNNAC 3 cut(s) 120, 1080, 1597
HpyAV CCTTC 2 cut(s) 434, 1555
HpyCH4III ACNGT 4 cut(s) 638, 1072, 1251, 1265
HpyF10VI GCNNNNNNNGC 4 cut(s) 701, 825, 1091, 1526
HpyF3I CTNAG 6 cut(s) 65, 171, 331, 531, 831, 930
Hsp92II CATG 6 cut(s) 43, 126, 304, 581, 1323, 1348
Kzo9I GATC 2 cut(s) 1186, 1510
LguI GCTCTTC 1 cut(s) 873
LmnI GCTCC 2 cut(s) 104, 864
Lsp1109I GCAGC 4 cut(s) 524, 688, 1516, 1519
LweI GCATC 4 cut(s) 682, 1020, 1021, 1238
MaeI CTAG 3 cut(s) 339, 1362, 1389
MaeIII GTNAC 4 cut(s) 10, 58, 136, 794
MalI GATC 2 cut(s) 1188, 1512
MbiI CCGCTC 1 cut(s) 856
MboI GATC 2 cut(s) 1186, 1510
MboII GAAGA 9 cut(s) 47, 150, 457, 604, 684, 701, 890, 935, 1217
MhlI GDGCHC 2 cut(s) 633, 1263
MlsI TGGCCA 1 cut(s) 819
MluCI AATT 9 cut(s) 99, 357, 371, 432, 551, 663, 961, 1126, 1326
MluNI TGGCCA 1 cut(s) 819
MlyI GAGTC 4 cut(s) 55, 137, 896, 897
Mox20I TGGCCA 1 cut(s) 819
Mph1103I ATGCAT 1 cut(s) 697
MroXI GAANNNNTTC 2 cut(s) 280, 953
MscI TGGCCA 1 cut(s) 819
MseI TTAA 1 cut(s) 894
MslI CAYNNNNRTG 1 cut(s) 1583
Msp20I TGGCCA 1 cut(s) 819
MspA1I CMGCKG 2 cut(s) 1085, 1520
MspI CCGG 3 cut(s) 96, 616, 1064
MspR9I CCNGG 1 cut(s) 1064
Mva1269I GAATGC 3 cut(s) 953, 1379, 1449
MwoI GCNNNNNNNGC 4 cut(s) 701, 825, 1091, 1526
NciI CCSGG 1 cut(s) 1064
NcoI CCATGG 1 cut(s) 1319
NdeII GATC 2 cut(s) 1186, 1510
NlaIII CATG 6 cut(s) 43, 126, 304, 581, 1323, 1348
NlaIV GGNNCC 5 cut(s) 106, 180, 246, 860, 1262
NmuCI GTSAC 2 cut(s) 58, 794
NsiI ATGCAT 1 cut(s) 697
NspI RCATGY 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 1356
PciI ACATGT 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 873
PctI GAATGC 3 cut(s) 953, 1379, 1449
PdmI GAANNNNTTC 2 cut(s) 280, 953
PfeI GAWTC 3 cut(s) 164, 476, 1136
PkrI GCNGC 6 cut(s) 514, 703, 827, 858, 1531, 1534
PleI GAGTC 4 cut(s) 55, 137, 896, 896
PpsI GAGTC 4 cut(s) 55, 137, 896, 896
PscI ACATGT 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 633
PspFI CCCAGC 1 cut(s) 1520
PspN4I GGNNCC 5 cut(s) 106, 180, 246, 860, 1262
PspPI GGNCC 2 cut(s) 827, 1293
PspXI VCTCGAGB 1 cut(s) 1356
PsrI GAACNNNNNNTAC 2 cut(s) 196, 228
PvuII CAGCTG 2 cut(s) 1085, 1520
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
RseI CAYNNNNRTG 1 cut(s) 1583
SacI GAGCTC 1 cut(s) 633
SapI GCTCTTC 1 cut(s) 873
SaqAI TTAA 1 cut(s) 894
SatI GCNGC 6 cut(s) 513, 702, 826, 857, 1530, 1533
Sau3AI GATC 2 cut(s) 1186, 1510
Sau96I GGNCC 2 cut(s) 827, 1293
SchI GAGTC 4 cut(s) 55, 137, 896, 897
ScrFI CCNGG 1 cut(s) 1064
SduI GDGCHC 2 cut(s) 633, 1263
SfaNI GCATC 4 cut(s) 682, 1020, 1021, 1238
SfcI CTRYAG 1 cut(s) 1080
SfiI GGCCNNNNNGGCC 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 1356
SinI GGWCC 1 cut(s) 1293
SlaI CTCGAG 1 cut(s) 1356
SmiMI CAYNNNNRTG 1 cut(s) 1583
SmlI CTYRAG 1 cut(s) 1356
SmoI CTYRAG 1 cut(s) 1356
Sse9I AATT 9 cut(s) 99, 357, 371, 432, 551, 663, 961, 1126, 1326
SsiI CCGC 3 cut(s) 825, 856, 1490
SspI AATATT 1 cut(s) 724
SspMI CTAG 3 cut(s) 339, 1362, 1389
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 1062
StyI CCWWGG 1 cut(s) 1319
TaaI ACNGT 4 cut(s) 638, 1072, 1251, 1265
TaqI TCGA 3 cut(s) 1185, 1357, 1441
TasI AATT 9 cut(s) 99, 357, 371, 432, 551, 663, 961, 1126, 1326
TauI GCSGC 2 cut(s) 828, 859
TfiI GAWTC 3 cut(s) 164, 476, 1136
Tru1I TTAA 1 cut(s) 894
Tru9I TTAA 1 cut(s) 894
TscAI CASTG 2 cut(s) 63, 1256
TseFI GTSAC 2 cut(s) 58, 794
TseI GCWGC 4 cut(s) 512, 701, 1529, 1532
Tsp45I GTSAC 2 cut(s) 58, 794
TspDTI ATGAA 1 cut(s) 1230
TspGWI ACGGA 1 cut(s) 935
TspRI CASTG 2 cut(s) 63, 1256
VpaK11BI GGWCC 1 cut(s) 1293
XagI CCTNNNNNAGG 1 cut(s) 1559
XbaI TCTAGA 1 cut(s) 338
XceI RCATGY 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 1356
XmiI GTMKAC 1 cut(s) 1079
XmnI GAANNNNTTC 2 cut(s) 280, 953
XspI CTAG 3 cut(s) 339, 1362, 1389
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.