AT1G72770

phosphatase 2C

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
27389948 .. 27393327
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72770.5

Sequence Viewer

Length: 1536 bp
ATGGAGGAGATGACTCCCGCAGTTGCAATGACTCTTAGCTTAGCAGCCAACACCATGTGTGAATCATCACCTGTCGAGATCACTCAGCTAAAGAACGTTACTGATGCAGCTGACTTGTTATCTGATTCTGAAAATCAAAGCTTTTGCAACGGAGGGACTGAATGCACTATGGAAGATGTTTCTGAACTGGAAGAGGTAGGTGAACAGGATTTGTTGAAAACTTTATCCGATACGAGAAGCGGGTCTTCCAATGTTTTTGATGAAGACGATGTATTGTCTGTTGTGGAGGATAATAGTGCTGTCATAAGTGAGGGCTTGTTAGTTGTTGATGCAGGCTCTGAATTAAGCTTGTCTAATACAGCTATGGAAATAGATAACGGGCGAGTTCTTGCAACCGCGATTATCGTAGGCGAATCAAGCATTGAGCAGGTTCCCACCGCGGAAGTTCTTATCGCGGGTGTAAATCAGGATACCAATACTTCGGAGGTTGTCATTAGATTGCCAGATGAAAATAGTAATCATCTGGTGAAAGGGAGAAGTGTTTATGAACTAGATTGTATACCGCTTTGGGGCACGGTTTCCATTCAAGGGAATAGATCTGAGATGGAGGATGCTTTTGCCGTGTCACCTCATTTTCTGAAACTACCCATCAAAATGCTTATGGGGGACCATGAGGGTATGAGTCCAAGCCTCACACACCTCACCGGTCATTTTTTCGGTGTTTATGATGGTCATGGAGGCCATAAGGTTGCTGACTATTGCCGAGATAGACTCCATTTTGCTTTGGCTGAAGAAATAGAACGTATAAAAGACGAATTATGCAAGAGGAATACAGGAGAGGGTAGGCAGGTGCAGTGGGATAAAGTCTTCACGAGTTGTTTTCTAACTGTCGATGGTGAGATTGAAGGAAAAATTGGTAGAGCCGTTGTTGGTTCTTCTGATAAGGTTCTTGAGGCTGTTGCGTCTGAGACCGTAGGATCAACTGCTGTTGTTGCCTTGGTTTGCTCATCACATATAGTAGTTTCTAACTGCGGTGATTCGAGGGCGGTTTTATTCCGTGGCAAAGAAGCCATGCCCTTGTCAGTTGATCACAAACCAGATAGAGAGGATGAATATGCAAGAATAGAAAATGCTGGAGGCAAAGTTATACAATGGCAAGGCGCACGTGTTTTTGGTGTTCTCGCCATGTCTAGGTCCATCGGTGACAGATATCTGAAGCCATATGTGATCCCAGAACCGGAAGTGACATTCATGCCTCGGTCAAGAGAAGACGAGTGTCTCATACTAGCCAGTGACGGTCTTTGGGATGTAATGAACAACCAAGAAGTCTGCGAAATAGCAAGGAGACGGATATTGATGTGGCACAAGAAGAACGGTGCACCGCCTCTAGCAGAGAGAGGCAAAGGAATAGATCCAGCTTGCCAAGCCGCAGCTGACTACCTCTCAATGCTTGCTCTACAAAAAGGAAGTAAAGACAACATCTCCATCATTGTGATTGACTTGAAAGCTCAAAGAAAGTTCAAGACCAGAACCTGA

Protein Analysis

511

Amino Acids

55.74

Weight (kDa)

4.73

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 194 - 405 9.5e-36 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 838
Acc36I ACCTGC 2 cut(s) 418, 838
AccI GTMKAC 1 cut(s) 559
AccII CGCG 3 cut(s) 398, 440, 455
AclI AACGTT 1 cut(s) 96
AclWI GGATC 3 cut(s) 985, 1222, 1406
AcuI CTGAAG 2 cut(s) 810, 1235
AcvI CACGTG 1 cut(s) 1166
AdeI CACNNNGTG 1 cut(s) 57
AfiI CCNNNNNNNGG 4 cut(s) 569, 588, 1191, 1237
AflIII ACRYGT 1 cut(s) 1165
AgeI ACCGGT 1 cut(s) 704
AgsI TTSAA 5 cut(s) 217, 587, 905, 1504, 1522
AjuI GAANNNNNNNTTGG 2 cut(s) 897, 929
AluBI AGCT 9 cut(s) 39, 88, 110, 141, 348, 362, 1418, 1433, 1508
AluI AGCT 9 cut(s) 39, 88, 110, 141, 348, 362, 1418, 1433, 1508
Alw21I GWGCWC 1 cut(s) 1381
Alw26I GTCTC 3 cut(s) 962, 1283, 1339
Alw44I GTGCAC 1 cut(s) 1377
AlwI GGATC 3 cut(s) 985, 1222, 1406
AlwNI CAGNNNCTG 2 cut(s) 338, 1533
AoxI GGCC 1 cut(s) 739
ApaLI GTGCAC 1 cut(s) 1377
ApeKI GCWGC 3 cut(s) 44, 107, 1430
AsiGI ACCGGT 1 cut(s) 704
AspLEI GCGC 1 cut(s) 1163
AspS9I GGNCC 2 cut(s) 667, 1194
AsuHPI GGTGA 8 cut(s) 60, 212, 538, 618, 694, 908, 1046, 1214
AvaII GGWCC 2 cut(s) 667, 1194
BaeGI GKGCMC 2 cut(s) 575, 1381
BauI CACGAG 1 cut(s) 871
BbrPI CACGTG 1 cut(s) 1166
BbsI GAAGAC 4 cut(s) 237, 270, 859, 1275
Bbv12I GWGCWC 1 cut(s) 1381
BbvI GCAGC 3 cut(s) 56, 119, 1442
BccI CCATC 6 cut(s) 598, 656, 722, 887, 1205, 1493
BceAI ACGGC 2 cut(s) 605, 908
BciVI GTATCC 1 cut(s) 463
BclI TGATCA 1 cut(s) 1087
BcoDI GTCTC 3 cut(s) 962, 1283, 1339
BfaI CTAG 4 cut(s) 551, 1191, 1286, 1388
BfuAI ACCTGC 2 cut(s) 418, 838
BfuI GTATCC 1 cut(s) 463
BglII AGATCT 1 cut(s) 596
BisI GCNGC 4 cut(s) 45, 108, 1428, 1431
BlpI GCTNAGC 1 cut(s) 40
BlsI GCNGC 4 cut(s) 46, 109, 1429, 1432
Bme18I GGWCC 2 cut(s) 667, 1194
BmgT120I GGNCC 2 cut(s) 667, 1194
BmiI GGNNCC 2 cut(s) 432, 668
BmsI GCATC 3 cut(s) 94, 319, 601
BoxI GACNNNNGTC 1 cut(s) 1275
BpiI GAAGAC 4 cut(s) 237, 270, 859, 1275
BplI GAGNNNNNCTC 2 cut(s) 756, 788
BpmI CTGGAG 1 cut(s) 1155
Bpu1102I GCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 971
BsaAI YACGTR 1 cut(s) 1166
BsaI GGTCTC 1 cut(s) 962
BsaJI CCNNGG 4 cut(s) 438, 996, 1057, 1256
BsaWI WCCGGW 2 cut(s) 704, 1237
BsaXI ACNNNNNCTCC 4 cut(s) 1128, 1158, 1466, 1496
Bsc4I CCNNNNNNNGG 4 cut(s) 569, 588, 1191, 1237
Bse118I RCCGGY 1 cut(s) 704
Bse1I ACTGG 2 cut(s) 192, 1290
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 4 cut(s) 438, 996, 1057, 1256
BseGI GGATG 3 cut(s) 616, 1114, 1312
BseLI CCNNNNNNNGG 4 cut(s) 569, 588, 1191, 1237
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 98, 591, 957
BseNI ACTGG 2 cut(s) 192, 1290
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 2 cut(s) 575, 1381
BseXI GCAGC 3 cut(s) 56, 119, 1442
BsgI GTGCAG 1 cut(s) 872
Bsh1236I CGCG 3 cut(s) 398, 440, 455
BshFI GGCC 1 cut(s) 741
BshTI ACCGGT 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 1381
BsiSI CCGG 2 cut(s) 705, 1238
BslFI GGGAC 2 cut(s) 169, 680
BslI CCNNNNNNNGG 4 cut(s) 569, 588, 1191, 1237
BsmAI GTCTC 3 cut(s) 962, 1283, 1339
BsmBI CGTCTC 1 cut(s) 1339
BsmFI GGGAC 2 cut(s) 169, 680
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 1 cut(s) 741
Bso31I GGTCTC 1 cut(s) 962
Bsp1286I GDGCHC 2 cut(s) 575, 1381
Bsp143I GATC 6 cut(s) 78, 596, 977, 1087, 1227, 1411
Bsp1720I GCTNAGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 741
BspCNI CTCAG 3 cut(s) 97, 592, 958
BspFNI CGCG 3 cut(s) 398, 440, 455
BspLI GGNNCC 2 cut(s) 432, 668
BspMI ACCTGC 2 cut(s) 418, 838
BspPI GGATC 3 cut(s) 985, 1222, 1406
BspTNI GGTCTC 1 cut(s) 962
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 704
BsrI ACTGG 2 cut(s) 192, 1290
BssAI RCCGGY 1 cut(s) 704
BssECI CCNNGG 4 cut(s) 438, 996, 1057, 1256
BssMI GATC 6 cut(s) 78, 596, 977, 1087, 1227, 1411
BssNAI GTATAC 1 cut(s) 560
BssSI CACGAG 1 cut(s) 871
BssT1I CCWWGG 1 cut(s) 996
Bst1107I GTATAC 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 871
Bst4CI ACNGT 5 cut(s) 577, 889, 973, 1298, 1376
Bst6I CTCTTC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 1166
BstC8I GCNNGC 3 cut(s) 334, 1420, 1452
BstDEI CTNAG 5 cut(s) 35, 40, 84, 600, 966
BstDSI CCRYGG 2 cut(s) 438, 1057
BstF5I GGATG 3 cut(s) 616, 1114, 1312
BstFNI CGCG 3 cut(s) 398, 440, 455
BstHHI GCGC 1 cut(s) 1163
BstKTI GATC 6 cut(s) 81, 599, 980, 1090, 1230, 1414
BstMAI GTCTC 3 cut(s) 962, 1283, 1339
BstMBI GATC 6 cut(s) 78, 596, 977, 1087, 1227, 1411
BstMWI GCNNNNNNNGC 3 cut(s) 417, 992, 1424
BstPAI GACNNNNGTC 1 cut(s) 1275
BstSLI GKGCMC 2 cut(s) 575, 1381
BstUI CGCG 3 cut(s) 398, 440, 455
BstV1I GCAGC 3 cut(s) 56, 119, 1442
BstV2I GAAGAC 4 cut(s) 237, 270, 859, 1275
BstX2I RGATCY 2 cut(s) 596, 1411
BstYI RGATCY 2 cut(s) 596, 1411
BstZ17I GTATAC 1 cut(s) 560
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 1 cut(s) 741
BtgI CCRYGG 2 cut(s) 438, 1057
BtsCI GGATG 3 cut(s) 616, 1114, 1312
BtsI GCAGTG 1 cut(s) 860
BtsIMutI CAGTG 2 cut(s) 860, 1297
BveI ACCTGC 2 cut(s) 418, 838
Cac8I GCNNGC 3 cut(s) 334, 1420, 1452
CaiI CAGNNNCTG 2 cut(s) 338, 1533
CfoI GCGC 1 cut(s) 1163
Cfr10I RCCGGY 1 cut(s) 704
Cfr13I GGNCC 2 cut(s) 667, 1194
Cfr42I CCGCGG 1 cut(s) 441
CseI GACGC 1 cut(s) 951
CspAI ACCGGT 1 cut(s) 704
CviAII CATG 6 cut(s) 55, 671, 734, 1072, 1186, 1252
DdeI CTNAG 5 cut(s) 35, 40, 84, 600, 966
DpnI GATC 6 cut(s) 80, 598, 979, 1089, 1229, 1413
DpnII GATC 6 cut(s) 78, 596, 977, 1087, 1227, 1411
DraIII CACNNNGTG 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 996
Eco31I GGTCTC 1 cut(s) 962
Eco32I GATATC 1 cut(s) 1211
Eco47I GGWCC 2 cut(s) 667, 1194
Eco57I CTGAAG 2 cut(s) 810, 1235
Eco72I CACGTG 1 cut(s) 1166
EcoRV GATATC 1 cut(s) 1211
EcoT14I CCWWGG 1 cut(s) 996
ErhI CCWWGG 1 cut(s) 996
Esp3I CGTCTC 1 cut(s) 1339
FaeI CATG 6 cut(s) 58, 674, 737, 1075, 1189, 1255
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 2 cut(s) 169, 680
FatI CATG 6 cut(s) 54, 670, 733, 1071, 1185, 1251
FauI CCCGC 3 cut(s) 25, 233, 448
FauNDI CATATG 1 cut(s) 1222
FbaI TGATCA 1 cut(s) 1087
FblI GTMKAC 1 cut(s) 559
Fnu4HI GCNGC 4 cut(s) 45, 108, 1428, 1431
FokI GGATG 3 cut(s) 623, 1121, 1319
Fsp4HI GCNGC 4 cut(s) 45, 108, 1428, 1431
FspBI CTAG 4 cut(s) 551, 1191, 1286, 1388
GlaI GCGC 1 cut(s) 1162
GluI GCNGC 4 cut(s) 45, 108, 1428, 1431
GsuI CTGGAG 1 cut(s) 1155
HaeIII GGCC 1 cut(s) 741
HapII CCGG 2 cut(s) 705, 1238
HgaI GACGC 1 cut(s) 951
HhaI GCGC 1 cut(s) 1163
Hin1II CATG 6 cut(s) 58, 674, 737, 1075, 1189, 1255
Hin6I GCGC 1 cut(s) 1161
HinP1I GCGC 1 cut(s) 1161
HindIII AAGCTT 2 cut(s) 139, 346
HinfI GANTC 8 cut(s) 13, 31, 62, 125, 413, 682, 771, 1037
HpaII CCGG 2 cut(s) 705, 1238
HphI GGTGA 8 cut(s) 60, 212, 538, 618, 694, 908, 1046, 1214
Hpy166II GTNNAC 3 cut(s) 203, 560, 1379
Hpy188III TCNNGA 6 cut(s) 76, 467, 871, 950, 1263, 1522
Hpy8I GTNNAC 3 cut(s) 203, 560, 1379
HpyAV CCTTC 1 cut(s) 899
HpyCH4III ACNGT 5 cut(s) 577, 889, 973, 1298, 1376
HpyCH4IV ACGT 3 cut(s) 96, 802, 1165
HpyF10VI GCNNNNNNNGC 3 cut(s) 417, 992, 1424
HpyF3I CTNAG 5 cut(s) 35, 40, 84, 600, 966
HpySE526I ACGT 3 cut(s) 96, 802, 1165
Hsp92II CATG 6 cut(s) 58, 674, 737, 1075, 1189, 1255
HspAI GCGC 1 cut(s) 1161
Ksp22I TGATCA 1 cut(s) 1087
KspI CCGCGG 1 cut(s) 441
Kzo9I GATC 6 cut(s) 78, 596, 977, 1087, 1227, 1411
Lsp1109I GCAGC 3 cut(s) 56, 119, 1442
LweI GCATC 3 cut(s) 94, 319, 601
MaeI CTAG 4 cut(s) 551, 1191, 1286, 1388
MaeII ACGT 3 cut(s) 96, 802, 1165
MaeIII GTNAC 5 cut(s) 97, 624, 1202, 1243, 1292
MalI GATC 6 cut(s) 80, 598, 979, 1089, 1229, 1413
MboI GATC 6 cut(s) 78, 596, 977, 1087, 1227, 1411
MboII GAAGA 9 cut(s) 185, 203, 237, 275, 803, 859, 927, 1280, 1381
MflI RGATCY 2 cut(s) 596, 1411
MhlI GDGCHC 2 cut(s) 575, 1381
MluCI AATT 3 cut(s) 341, 815, 912
MlyI GAGTC 4 cut(s) 7, 25, 691, 765
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 2 cut(s) 653, 1490
MspA1I CMGCKG 3 cut(s) 110, 440, 1433
MspI CCGG 2 cut(s) 705, 1238
Mva1269I GAATGC 1 cut(s) 167
MvnI CGCG 3 cut(s) 398, 440, 455
MwoI GCNNNNNNNGC 3 cut(s) 417, 992, 1424
NdeI CATATG 1 cut(s) 1222
NdeII GATC 6 cut(s) 78, 596, 977, 1087, 1227, 1411
NlaIII CATG 6 cut(s) 58, 674, 737, 1075, 1189, 1255
NlaIV GGNNCC 2 cut(s) 432, 668
NmeAIII GCCGAG 1 cut(s) 788
NmuCI GTSAC 4 cut(s) 624, 1202, 1243, 1292
PaqCI CACCTGC 1 cut(s) 838
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 4 cut(s) 62, 125, 413, 1037
PinAI ACCGGT 1 cut(s) 704
PkrI GCNGC 4 cut(s) 46, 109, 1429, 1432
PleI GAGTC 4 cut(s) 7, 25, 690, 765
PmaCI CACGTG 1 cut(s) 1166
PmlI CACGTG 1 cut(s) 1166
PpsI GAGTC 4 cut(s) 7, 25, 690, 765
Ppu21I YACGTR 1 cut(s) 1166
PshAI GACNNNNGTC 1 cut(s) 1275
Psp1406I AACGTT 1 cut(s) 96
PspCI CACGTG 1 cut(s) 1166
PspN4I GGNNCC 2 cut(s) 432, 668
PspPI GGNCC 2 cut(s) 667, 1194
PstNI CAGNNNCTG 2 cut(s) 338, 1533
PsuI RGATCY 2 cut(s) 596, 1411
PvuII CAGCTG 2 cut(s) 110, 1433
RseI CAYNNNNRTG 2 cut(s) 653, 1490
SacII CCGCGG 1 cut(s) 441
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 4 cut(s) 45, 108, 1428, 1431
Sau3AI GATC 6 cut(s) 78, 596, 977, 1087, 1227, 1411
Sau96I GGNCC 2 cut(s) 667, 1194
SchI GAGTC 4 cut(s) 7, 25, 691, 765
SduI GDGCHC 2 cut(s) 575, 1381
SfaNI GCATC 3 cut(s) 94, 319, 601
Sfr303I CCGCGG 1 cut(s) 441
SgrBI CCGCGG 1 cut(s) 441
SinI GGWCC 2 cut(s) 667, 1194
SmiMI CAYNNNNRTG 2 cut(s) 653, 1490
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
Sse9I AATT 3 cut(s) 341, 815, 912
SspMI CTAG 4 cut(s) 551, 1191, 1286, 1388
StyI CCWWGG 1 cut(s) 996
TaaI ACNGT 5 cut(s) 577, 889, 973, 1298, 1376
TaiI ACGT 3 cut(s) 99, 805, 1168
TaqI TCGA 3 cut(s) 75, 891, 1040
TaqII GACCGA 1 cut(s) 1248
TasI AATT 3 cut(s) 341, 815, 912
TauI GCSGC 1 cut(s) 1430
TfiI GAWTC 4 cut(s) 62, 125, 413, 1037
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 860, 1297
TseFI GTSAC 4 cut(s) 624, 1202, 1243, 1292
TseI GCWGC 3 cut(s) 44, 107, 1430
Tsp45I GTSAC 4 cut(s) 624, 1202, 1243, 1292
TspDTI ATGAA 6 cut(s) 276, 522, 561, 1125, 1240, 1328
TspGWI ACGGA 3 cut(s) 165, 1046, 1363
TspRI CASTG 2 cut(s) 860, 1297
VneI GTGCAC 1 cut(s) 1377
VpaK11BI GGWCC 2 cut(s) 667, 1194
XmiI GTMKAC 1 cut(s) 559
XspI CTAG 4 cut(s) 551, 1191, 1286, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.