Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005080

Physical Location & Seq

Genomic Coordinates Forward (+)

66389653 .. 66393919

Gene Structure 4267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG459500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAAGACAAGGAAATTAATGGAGGACATGTCTCCGGCAGTTGCAGTGACACTTAGTTTAGGTAATACTGTGTGTGATAATTCCGCCATTGCAACCAATGTGGAGTTCGCATGGCTAAAGCTAGTAACAGACCCAGCAAATCTTTCATCGGATACCACTAAGGTGGTGCCTTTGGAGTTGATTTCAAATGGAAGTGGCAATGATACTAGGAATGAAATTAGTGTGGTAACCGTGCCATCGCAAGACGATAACAGTGGGGGAGCTGATTTGTTGAAGTTGCTGCCAAAGAATGGACACAGTTTGGTTATTAATGATTCTTTGGTTAAAGAAAGTGAGGAAGAAATCTTATCCTTTAGATATGATACTAATGGAATTGTTAGTGAGCAGTTGCTAACGTTAGAGTTGGGGTCTGAGATAAGCTTGACAGATGTTGTGGAGATGGGAAATACTGGCGAGGGTCAGATTGTTGCAAAAGCTATTGTCTTGGTCGAATCTACTATAGGGCAAGTGCCTTCTGGTGAAGTCATTGTGGCAGCAGTAACTCCAGTTTCTGAGTTACCTGGTAAAACTGAATTAGCAGCCTCTACAGCAGTGGATTTGCAGTCAAACGGGGAGAAGATTGTTAGTAAAGCAGCCATCCGAAGTGTTTTTGAGCTGGACTGTATTCCTCTTTGGGGTTCCGTTTCAATCTGTGGAAGAAGACCAGAAATGGAAGATGCAATTGCTGCTGTGCCTCGGTTCATTAATATTCCAATTAAAATGCTTATTGGCAATCATGTGTACAATGGAATGAGCCCAAGTTTGACCCACCTAACCAGTCATTTTTTTGGTATTTATGATGGGCATGGAGGATCTCAGGTTGCTAACTATTGTTGTGAACGCCTTCATTCAGCTTTGGCTGAAGAGCTTCAAATTATTGAGGATGATTTGACTGATGGAATAATGGGAGAAACTCAGCAGGTGAAGTGGGAGAAAGCATTCACTAATTGCTTCCAGAGTGTAGATGATGAGATAGGAGGAACAGTCAGCAGAGGCATCACCGGAAGTAATGAGGATGCTTCCGGCTCCAGCTTTGAGCCTGTTGCTGCAGAAACTGTGGGGTCTACAGCTGTGGTTGCATTAGTTTGTTCTTCCCATATTATAGTTGCGAACTGTGGTGATTCAAGAGCCGTTCTTTGTCGTGGCAAACAACCAGTACCATTATCAGTAGATCATAAAGTAAGTGTGTTTGTGGAAGGCCTATTACTTGTTAGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

419

Amino Acids

44.35

Weight (kDa)

4.53

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	249 - 408	1.8e-22	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17550 AT1G17550 AT1G72770 AT1G72770 AT1G72770 AT1G72770 AT1G72770
fragaria_vesca	FvH4_6g34170 FvH4_6g34170 FvH4_6g34170 FvH4_6g34170
malus_domestica	MD09G1188000.v1.1 MD17G1172400.v1.1
prunus_persica	Prupe.3G044900_v2.0.a1 Prupe.3G044900_v2.0.a1 Prupe.3G044900_v2.0.a1
pyrus_communis	pycom09g10440 pycom17g17010
rosa_chinensis	RchiOBHm_Chr2g0144521
rosa_laevigata	RLG00000020085
rosa_multiflora	Rmu_sc0005789.1_g000006 Rmu_sc0009947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101240
rosa_rugosa	Rorug02G0387400 Rorug02G0387500
rosa_samantha	Rh2AG439500 Rh2BG449600 Rh2CG426500 Rh2DG459500
rosa_wichuraiana	Rw2G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	949
Acc36I	ACCTGC	1 cut(s)	949
AccB1I	GGYRCC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	1103
AciI	CCGC	1 cut(s)	84
AclI	AACGTT	1 cut(s)	395
AclWI	GGATC	1 cut(s)	859
AcuI	CTGAAG	1 cut(s)	921
AfaI	GTAC	2 cut(s)	782, 1197
AfiI	CCNNNNNNNGG	2 cut(s)	290, 674
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	186, 274, 687, 911, 1164
AjnI	CCWGG	1 cut(s)	559
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	9 cut(s)	121, 263, 420, 476, 655, 893, 907, 1071, 1109
AluI	AGCT	9 cut(s)	121, 263, 420, 476, 655, 893, 907, 1071, 1109
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	859
AlwNI	CAGNNNCTG	2 cut(s)	551, 1094
AoxI	GGCC	1 cut(s)	1237
ApeKI	GCWGC	6 cut(s)	280, 533, 578, 632, 725, 1085
AseI	ATTAAT	3 cut(s)	17, 309, 744
Asp700I	GAANNNNTTC	3 cut(s)	882, 906, 977
AsuHPI	GGTGA	4 cut(s)	530, 973, 1030, 1169
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	797
BarI	GAAGNNNNNNTAC	2 cut(s)	1227, 1259
BbsI	GAAGAC	2 cut(s)	11, 706
BbvI	GCAGC	6 cut(s)	267, 545, 590, 644, 712, 1072
BccI	CCATC	5 cut(s)	244, 433, 644, 833, 929
BceAI	ACGGC	1 cut(s)	1154
BciT130I	CCWGG	1 cut(s)	561
BciVI	GTATCC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	122, 207
BfmI	CTRYAG	4 cut(s)	498, 585, 1086, 1104
BfuAI	ACCTGC	1 cut(s)	949
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	6 cut(s)	281, 534, 579, 633, 726, 1086
BlsI	GCNGC	6 cut(s)	282, 535, 580, 634, 727, 1087
Bme1390I	CCNGG	1 cut(s)	561
BmiI	GGNNCC	3 cut(s)	168, 679, 1066
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	3 cut(s)	706, 1044, 1045
BpiI	GAAGAC	2 cut(s)	11, 706
BpmI	CTGGAG	2 cut(s)	528, 1051
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	1 cut(s)	1040
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 1008, 1038
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 674
Bse1I	ACTGG	4 cut(s)	454, 545, 816, 1193
Bse3DI	GCAATG	2 cut(s)	87, 205
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	3 cut(s)	636, 928, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	290, 674
BseMI	GCAATG	2 cut(s)	87, 205
BseMII	CTCAG	4 cut(s)	402, 543, 869, 968
BseNI	ACTGG	4 cut(s)	454, 545, 816, 1193
BseXI	GCAGC	6 cut(s)	267, 545, 590, 644, 712, 1072
BseYI	CCCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	1239
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	35, 1041, 1062
BslI	CCNNNNNNNGG	2 cut(s)	290, 674
BsmAI	GTCTC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	977
BsnI	GGCC	1 cut(s)	1239
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	2 cut(s)	851, 1210
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	1239
BspCNI	CTCAG	4 cut(s)	403, 544, 868, 967
BspLI	GGNNCC	3 cut(s)	168, 679, 1066
BspMAI	CTGCAG	1 cut(s)	1090
BspMI	ACCTGC	1 cut(s)	949
BspPI	GGATC	1 cut(s)	859
BspQI	GCTCTTC	1 cut(s)	897
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	2 cut(s)	87, 205
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	4 cut(s)	454, 545, 816, 1193
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	2 cut(s)	851, 1210
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	8 cut(s)	70, 232, 254, 299, 662, 1024, 1096, 1154
Bst6I	CTCTTC	1 cut(s)	897
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstAUI	TGTACA	1 cut(s)	780
BstDEI	CTNAG	6 cut(s)	53, 159, 411, 552, 855, 954
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	3 cut(s)	636, 928, 1060
BstKTI	GATC	2 cut(s)	854, 1213
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	2 cut(s)	851, 1210
BstMWI	GCNNNNNNNGC	3 cut(s)	587, 725, 1115
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	1 cut(s)	31
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	4 cut(s)	498, 585, 1086, 1104
BstV1I	GCAGC	6 cut(s)	267, 545, 590, 644, 712, 1072
BstV2I	GAAGAC	2 cut(s)	11, 706
BstX2I	RGATCY	1 cut(s)	851
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	851
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	1239
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	636, 928, 1060
BtsI	GCAGTG	2 cut(s)	51, 597
BtsIMutI	CAGTG	3 cut(s)	51, 259, 597
BveI	ACCTGC	1 cut(s)	949
CaiI	CAGNNNCTG	2 cut(s)	551, 1094
CsiI	ACCWGGT	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	781, 1196
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	4 cut(s)	28, 111, 776, 845
CviQI	GTAC	2 cut(s)	781, 1196
DdeI	CTNAG	6 cut(s)	53, 159, 411, 552, 855, 954
DpnI	GATC	2 cut(s)	853, 1212
DpnII	GATC	2 cut(s)	851, 1210
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
EciI	GGCGGA	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	1239
Eco24I	GRGCYC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	921
Eco91I	GGTNACC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	797
FaeI	CATG	4 cut(s)	31, 114, 779, 848
FatI	CATG	4 cut(s)	27, 110, 775, 844
FblI	GTMKAC	1 cut(s)	1103
Fnu4HI	GCNGC	6 cut(s)	281, 534, 579, 633, 726, 1086
FokI	GGATG	3 cut(s)	623, 935, 1067
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	6 cut(s)	281, 534, 579, 633, 726, 1086
FspBI	CTAG	2 cut(s)	122, 207
GluI	GCNGC	6 cut(s)	281, 534, 579, 633, 726, 1086
GsaI	CCCAGC	1 cut(s)	137
GsuI	CTGGAG	2 cut(s)	528, 1051
HaeIII	GGCC	1 cut(s)	1239
HapII	CCGG	3 cut(s)	35, 1041, 1062
Hin1II	CATG	4 cut(s)	31, 114, 779, 848
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	3 cut(s)	314, 491, 1160
HpaII	CCGG	3 cut(s)	35, 1041, 1062
HphI	GGTGA	4 cut(s)	530, 973, 1030, 1169
Hpy166II	GTNNAC	3 cut(s)	781, 878, 1104
Hpy188I	TCNGA	5 cut(s)	151, 412, 462, 553, 641
Hpy188III	TCNNGA	2 cut(s)	994, 1164
Hpy8I	GTNNAC	3 cut(s)	781, 878, 1104
HpyAV	CCTTC	3 cut(s)	522, 893, 1229
HpyCH4III	ACNGT	8 cut(s)	70, 232, 254, 299, 662, 1024, 1096, 1154
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	7 cut(s)	44, 92, 470, 601, 719, 1088, 1118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	587, 725, 1115
HpyF3I	CTNAG	6 cut(s)	53, 159, 411, 552, 855, 954
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	4 cut(s)	31, 114, 779, 848
Kzo9I	GATC	2 cut(s)	851, 1210
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	2 cut(s)	260, 1070
Lsp1109I	GCAGC	6 cut(s)	267, 545, 590, 644, 712, 1072
LweI	GCATC	3 cut(s)	706, 1044, 1045
MabI	ACCWGGT	1 cut(s)	559
MaeI	CTAG	2 cut(s)	122, 207
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	5 cut(s)	46, 124, 226, 538, 555
MalI	GATC	2 cut(s)	853, 1212
MboI	GATC	2 cut(s)	851, 1210
MboII	GAAGA	8 cut(s)	16, 350, 628, 708, 711, 725, 914, 1122
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	851
MhlI	GDGCHC	1 cut(s)	797
MluCI	AATT	9 cut(s)	14, 79, 216, 372, 572, 720, 753, 912, 985
MroXI	GAANNNNTTC	3 cut(s)	882, 906, 977
MseI	TTAA	6 cut(s)	17, 309, 324, 744, 756, 1258
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	1109
MspI	CCGG	3 cut(s)	35, 1041, 1062
MspR9I	CCNGG	1 cut(s)	561
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	977
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	3 cut(s)	587, 725, 1115
NdeII	GATC	2 cut(s)	851, 1210
NlaIII	CATG	4 cut(s)	31, 114, 779, 848
NlaIV	GGNNCC	3 cut(s)	168, 679, 1066
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	161
PaqCI	CACCTGC	1 cut(s)	949
PceI	AGGCCT	1 cut(s)	1239
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	897
PctI	GAATGC	1 cut(s)	977
PdmI	GAANNNNTTC	3 cut(s)	882, 906, 977
PfeI	GAWTC	3 cut(s)	314, 491, 1160
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	6 cut(s)	282, 535, 580, 634, 727, 1087
PscI	ACATGT	1 cut(s)	27
PshBI	ATTAAT	3 cut(s)	17, 309, 744
Psp1406I	AACGTT	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	559
PspEI	GGTNACC	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	3 cut(s)	168, 679, 1066
PstI	CTGCAG	1 cut(s)	1090
PstNI	CAGNNNCTG	2 cut(s)	551, 1094
PsuI	RGATCY	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	1109
RsaI	GTAC	2 cut(s)	782, 1197
RsaNI	GTAC	2 cut(s)	781, 1196
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	6 cut(s)	17, 309, 324, 744, 756, 1258
SatI	GCNGC	6 cut(s)	281, 534, 579, 633, 726, 1086
Sau3AI	GATC	2 cut(s)	851, 1210
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	797
SexAI	ACCWGGT	1 cut(s)	559
SfaNI	GCATC	3 cut(s)	706, 1044, 1045
SfcI	CTRYAG	4 cut(s)	498, 585, 1086, 1104
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	9 cut(s)	14, 79, 216, 372, 572, 720, 753, 912, 985
SseBI	AGGCCT	1 cut(s)	1239
SsiI	CCGC	1 cut(s)	84
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	2 cut(s)	122, 207
StuI	AGGCCT	1 cut(s)	1239
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	8 cut(s)	70, 232, 254, 299, 662, 1024, 1096, 1154
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	489
TasI	AATT	9 cut(s)	14, 79, 216, 372, 572, 720, 753, 912, 985
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	3 cut(s)	314, 491, 1160
Tru1I	TTAA	6 cut(s)	17, 309, 324, 744, 756, 1258
Tru9I	TTAA	6 cut(s)	17, 309, 324, 744, 756, 1258
TscAI	CASTG	3 cut(s)	51, 259, 597
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	6 cut(s)	280, 533, 578, 632, 725, 1085
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	5 cut(s)	17, 135, 228, 730, 875
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	3 cut(s)	51, 259, 597
Van91I	CCANNNNNTGG	1 cut(s)	290
VspI	ATTAAT	3 cut(s)	17, 309, 744
XceI	RCATGY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	1103
XmnI	GAANNNNTTC	3 cut(s)	882, 906, 977
XspI	CTAG	2 cut(s)	122, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.