MD09G1188000.v1.1

phosphatase 2c

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
16417301 .. 16421263
3963 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1188000.v1.1.491

Sequence Viewer

Length: 1635 bp
ATGTCAAATGTTACAAAGATAAGGAGATTGATGGAAGACATGTCTCCAGCAGTTGCAGTGACTCTTAGTTTAGGTAATGCTATATGTGATAGTGCCGGAATTGGAGCCAATGTGGAGTTCACATGGCTAAAGCTTGTAACAGACTTGGGAAACTTGTCTTCAGATTCCTCCAAGGTGATTCCTTTAGAGTCAGTCGCTTGCAGTAAAGGAAGTTCCGATGATATTGAAAGCAAAGTTAGTGTGGTTCCCGTGCCATCACGAGACGATGATGGTGGAAACACTTCTGTTGCTAATAATGTCATGGTTCAAGAAAGTGAGGAAGAGCAAATCTTAGCCTCTAGATTTGATACTAACGGAATTGTTAGTGAGGAAGTGCTGAAGTTAGAGATGGGGTCTGCGATAAGCTTGCCAGATGATATGGAGATTGGAAAAATTAGTGAAGGGAAGATTGTTGCAAAAGCTATTGTCTTGGTAGAATCGGCTGTTGGTAAAATGGCTTCTGGATTTGTTGCAGCAGTAAGCCCCGCTTCTGAGTTATCAGATAAATCTGAATTATCAACCTCTACGGTACTTATCCACGCAAATGGTGAGAAGATTGTCAGTAAAGCAGGCAACCGGAGTGTTTTTGAGCTAAACTGTATTCCCCTCTGGGGTTCTGTATCAATTTGTGGAAGACGACCAGAAATGGAAGATGCATTTGCTGCTGTTCCTCGGTGTATCAATATTCCAATCAAAATGCTAGCCAGTAATCAAGTGTATAATGGAATGAGCCAAAGTTTGACCCACCTAACCAGTCACTTTTTTGGCATTTACGATGGCCACGGCGGCCCTCAGGTTGCTAACTTTTGTAGTGAGCGGCTCCATTTGGCTTTGGCCGAAGAGCTTGGAGTCATTAAGGATGACTCTGGTGATGGGATTACGGGAGAAACTCAGCAGTTGCATTGGGAGAAAGCATTCACTAATTGTTTTCAAAGGGTTGATGATGAGATTGGAGGAAAAGTAAGCAGAGGCATCATTGAAAGCAACACAGATGCCTCTGAAGTTAGTTTTGAGCCTATTGCCCCAGAAACTGTTGGGTCTACAGCTGTGGTTGCATTAGTTTCGTCATCCCATATTATAGTTGCAAATTGTGGTGATTCAAGAGCAGTTCTATGTCGTGGCAAACAAGCAATACCATTATCAGTCGATCATAAACCAAACAGAGAAGACGAATATGAAAGGATTGAGGCATCTGGCGGCAAGGTAATACAATGGAATGGGCACCGTGTTTTTGGAGTTCTTGCAATGTCAAGGTCCATTGGGGATAGATATTTGAAACCGTGGATAATTCCAGAACCAGAAGTCATGGTTGTCCCTCGAGCTAGAGATGACGAATGCCTTATTTTAGCTAGTGATGGTCTATGGGATGTTATGACGAATGAGGAAGCTTGTGATGTGGCTCGAAAACGCATTCTGCTATGGCACAAAAAGAACGGGGCTACACCTCTTGCGGAAAGGGGAACGGGAGTTGATCCTGCGGCTGGGGAAGCTGCTGCCTACCTTGCAACCCTTGCCCTCCAGAAGGGAAGCAAGGACAACATCTCTGTGGTTGTGGTGGACTTGAAAGCTCAAAGGAAGTTCAAGAGCAAATCCTAA

Protein Analysis

545

Amino Acids

58.24

Weight (kDa)

5.06

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 244 - 527 1.8e-62 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1260
AccBSI CCGCTC 1 cut(s) 856
AccI GTMKAC 1 cut(s) 1079
AciI CCGC 6 cut(s) 525, 825, 856, 1236, 1490, 1517
AclWI GGATC 1 cut(s) 1505
AcoI YGGCCR 2 cut(s) 817, 873
AcuI CTGAAG 3 cut(s) 144, 398, 1059
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 3 cut(s) 650, 1520, 1561
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 8 cut(s) 227, 308, 971, 1019, 1140, 1315, 1603, 1621
AjuI GAANNNNNNNTTGG 4 cut(s) 101, 133, 468, 500
Alw26I GTCTC 2 cut(s) 48, 255
AlwI GGATC 1 cut(s) 1505
AlwNI CAGNNNCTG 1 cut(s) 1070
Ama87I CYCGRG 1 cut(s) 1356
AoxI GGCC 3 cut(s) 817, 826, 873
ApeKI GCWGC 4 cut(s) 512, 701, 1529, 1532
Asp700I GAANNNNTTC 2 cut(s) 280, 953
AspS9I GGNCC 2 cut(s) 827, 1293
AsuHPI GGTGA 4 cut(s) 187, 599, 920, 1145
AsuNHI GCTAGC 1 cut(s) 739
AvaI CYCGRG 1 cut(s) 1356
AvaII GGWCC 1 cut(s) 1293
AxyI CCTNAGG 1 cut(s) 831
BaeGI GKGCMC 1 cut(s) 1263
BalI TGGCCA 1 cut(s) 819
BanI GGYRCC 1 cut(s) 1260
BarI GAAGNNNNNNTAC 2 cut(s) 481, 513
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 4 cut(s) 42, 150, 679, 1212
BbvI GCAGC 4 cut(s) 524, 688, 1516, 1519
BccI CCATC 7 cut(s) 25, 262, 263, 382, 809, 905, 1388
BceAI ACGGC 1 cut(s) 838
BcgI CGANNNNNNTGC 4 cut(s) 388, 422, 1083, 1117
BcoDI GTCTC 2 cut(s) 48, 255
BfaI CTAG 4 cut(s) 339, 740, 1362, 1389
BfmI CTRYAG 1 cut(s) 1080
BglI GCCNNNNNGGC 1 cut(s) 825
BisI GCNGC 8 cut(s) 513, 702, 826, 857, 1237, 1518, 1530, 1533
BlsI GCNGC 8 cut(s) 514, 703, 827, 858, 1238, 1519, 1531, 1534
Bme18I GGWCC 1 cut(s) 1293
BmeT110I CYCGRG 1 cut(s) 1356
BmgT120I GGNCC 2 cut(s) 827, 1293
BmiI GGNNCC 4 cut(s) 106, 246, 860, 1262
BmsI GCATC 4 cut(s) 682, 1020, 1021, 1238
BmtI GCTAGC 1 cut(s) 743
BpiI GAAGAC 4 cut(s) 42, 150, 679, 1212
BpmI CTGGAG 2 cut(s) 30, 1541
BsaJI CCNNGG 4 cut(s) 171, 710, 820, 1319
BsaWI WCCGGW 1 cut(s) 615
BsaXI ACNNNNNCTCC 4 cut(s) 96, 126, 984, 1014
Bsc4I CCNNNNNNNGG 3 cut(s) 650, 1520, 1561
Bse1I ACTGG 2 cut(s) 744, 792
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 1290
BseDI CCNNGG 4 cut(s) 171, 710, 820, 1319
BseGI GGATG 3 cut(s) 904, 1106, 1411
BseLI CCNNNNNNNGG 3 cut(s) 650, 1520, 1561
BseMI GCAATG 1 cut(s) 1290
BseMII CTCAG 3 cut(s) 522, 845, 944
BseNI ACTGG 2 cut(s) 744, 792
BseSI GKGCMC 1 cut(s) 1263
BseXI GCAGC 4 cut(s) 524, 688, 1516, 1519
BseYI CCCAGC 1 cut(s) 1520
BshFI GGCC 3 cut(s) 819, 828, 875
BshNI GGYRCC 1 cut(s) 1260
BsiHKCI CYCGRG 1 cut(s) 1356
BsiSI CCGG 2 cut(s) 96, 616
BslFI GGGAC 1 cut(s) 1337
BslI CCNNNNNNNGG 3 cut(s) 650, 1520, 1561
BsmAI GTCTC 2 cut(s) 48, 255
BsmBI CGTCTC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 1337
BsmI GAATGC 3 cut(s) 953, 1379, 1449
BsnI GGCC 3 cut(s) 819, 828, 875
BsoBI CYCGRG 1 cut(s) 1356
Bsp1286I GDGCHC 1 cut(s) 1263
Bsp143I GATC 2 cut(s) 1186, 1510
BspACI CCGC 6 cut(s) 525, 825, 856, 1236, 1490, 1517
BspANI GGCC 3 cut(s) 819, 828, 875
BspCNI CTCAG 3 cut(s) 523, 844, 943
BspLI GGNNCC 4 cut(s) 106, 246, 860, 1262
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 1 cut(s) 1505
BspQI GCTCTTC 2 cut(s) 315, 873
BspT107I GGYRCC 1 cut(s) 1260
BsrBI CCGCTC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 1290
BsrI ACTGG 2 cut(s) 744, 792
BssECI CCNNGG 4 cut(s) 171, 710, 820, 1319
BssMI GATC 2 cut(s) 1186, 1510
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 258
Bst4CI ACNGT 5 cut(s) 568, 638, 1072, 1265, 1320
Bst6I CTCTTC 2 cut(s) 315, 873
BstAPI GCANNNNNTGC 2 cut(s) 701, 1550
BstC8I GCNNGC 4 cut(s) 199, 407, 610, 741
BstDEI CTNAG 5 cut(s) 65, 331, 531, 831, 930
BstDSI CCRYGG 2 cut(s) 820, 1319
BstENI CCTNNNNNAGG 1 cut(s) 1559
BstF5I GGATG 3 cut(s) 904, 1106, 1411
BstKTI GATC 2 cut(s) 1189, 1513
BstMAI GTCTC 2 cut(s) 48, 255
BstMBI GATC 2 cut(s) 1186, 1510
BstMWI GCNNNNNNNGC 6 cut(s) 701, 825, 1091, 1526, 1541, 1550
BstNSI RCATGY 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 1080
BstSLI GKGCMC 1 cut(s) 1263
BstV1I GCAGC 4 cut(s) 524, 688, 1516, 1519
BstV2I GAAGAC 4 cut(s) 42, 150, 679, 1212
BstXI CCANNNNNNTGG 1 cut(s) 584
Bsu36I CCTNAGG 1 cut(s) 831
BsuRI GGCC 3 cut(s) 819, 828, 875
BtgI CCRYGG 2 cut(s) 820, 1319
BtsCI GGATG 3 cut(s) 904, 1106, 1411
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 4 cut(s) 199, 407, 610, 741
CaiI CAGNNNCTG 1 cut(s) 1070
Cfr13I GGNCC 2 cut(s) 827, 1293
Csp6I GTAC 1 cut(s) 569
CviAII CATG 4 cut(s) 40, 123, 301, 1345
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 5 cut(s) 65, 331, 531, 831, 930
DpnI GATC 2 cut(s) 1188, 1512
DpnII GATC 2 cut(s) 1186, 1510
EaeI YGGCCR 2 cut(s) 817, 873
Eam1104I CTCTTC 2 cut(s) 315, 873
EarI CTCTTC 2 cut(s) 315, 873
Eco130I CCWWGG 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 1293
Eco57I CTGAAG 3 cut(s) 144, 398, 1059
Eco81I CCTNAGG 1 cut(s) 831
Eco88I CYCGRG 1 cut(s) 1356
EcoNI CCTNNNNNAGG 1 cut(s) 1559
EcoT14I CCWWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 4 cut(s) 43, 126, 304, 1348
FalI AAGNNNNNCTT 2 cut(s) 511, 543
FaqI GGGAC 1 cut(s) 1337
FatI CATG 4 cut(s) 39, 122, 300, 1344
FauI CCCGC 1 cut(s) 532
FblI GTMKAC 1 cut(s) 1079
Fnu4HI GCNGC 8 cut(s) 513, 702, 826, 857, 1237, 1518, 1530, 1533
FokI GGATG 3 cut(s) 911, 1093, 1418
Fsp4HI GCNGC 8 cut(s) 513, 702, 826, 857, 1237, 1518, 1530, 1533
FspBI CTAG 4 cut(s) 339, 740, 1362, 1389
GluI GCNGC 8 cut(s) 513, 702, 826, 857, 1237, 1518, 1530, 1533
GsaI CCCAGC 1 cut(s) 1524
GsuI CTGGAG 2 cut(s) 30, 1541
HaeIII GGCC 3 cut(s) 819, 828, 875
HapII CCGG 2 cut(s) 96, 616
Hin1II CATG 4 cut(s) 43, 126, 304, 1348
HindIII AAGCTT 3 cut(s) 131, 403, 1425
HinfI GANTC 8 cut(s) 61, 164, 178, 188, 476, 888, 902, 1136
HpaII CCGG 2 cut(s) 96, 616
HphI GGTGA 4 cut(s) 187, 599, 920, 1145
Hpy166II GTNNAC 3 cut(s) 120, 1080, 1597
Hpy188I TCNGA 6 cut(s) 163, 217, 532, 541, 550, 1039
Hpy188III TCNNGA 8 cut(s) 258, 308, 339, 501, 1140, 1331, 1558, 1621
Hpy8I GTNNAC 3 cut(s) 120, 1080, 1597
HpyAV CCTTC 2 cut(s) 434, 1555
HpyCH4III ACNGT 5 cut(s) 568, 638, 1072, 1265, 1320
HpyF10VI GCNNNNNNNGC 6 cut(s) 701, 825, 1091, 1526, 1541, 1550
HpyF3I CTNAG 5 cut(s) 65, 331, 531, 831, 930
Hsp92II CATG 4 cut(s) 43, 126, 304, 1348
Kzo9I GATC 2 cut(s) 1186, 1510
LguI GCTCTTC 2 cut(s) 315, 873
LmnI GCTCC 2 cut(s) 104, 864
Lsp1109I GCAGC 4 cut(s) 524, 688, 1516, 1519
LweI GCATC 4 cut(s) 682, 1020, 1021, 1238
MaeI CTAG 4 cut(s) 339, 740, 1362, 1389
MaeIII GTNAC 4 cut(s) 10, 58, 136, 794
MalI GATC 2 cut(s) 1188, 1512
MbiI CCGCTC 1 cut(s) 856
MboI GATC 2 cut(s) 1186, 1510
MboII GAAGA 9 cut(s) 47, 150, 332, 457, 604, 684, 701, 890, 1217
MhlI GDGCHC 1 cut(s) 1263
MlsI TGGCCA 1 cut(s) 819
MluCI AATT 8 cut(s) 99, 357, 432, 551, 663, 961, 1126, 1326
MluNI TGGCCA 1 cut(s) 819
MlyI GAGTC 4 cut(s) 55, 197, 896, 897
Mox20I TGGCCA 1 cut(s) 819
Mph1103I ATGCAT 1 cut(s) 697
MroXI GAANNNNTTC 2 cut(s) 280, 953
MscI TGGCCA 1 cut(s) 819
MseI TTAA 1 cut(s) 894
MslI CAYNNNNRTG 2 cut(s) 582, 1583
Msp20I TGGCCA 1 cut(s) 819
MspA1I CMGCKG 1 cut(s) 1085
MspI CCGG 2 cut(s) 96, 616
Mva1269I GAATGC 3 cut(s) 953, 1379, 1449
MwoI GCNNNNNNNGC 6 cut(s) 701, 825, 1091, 1526, 1541, 1550
NdeII GATC 2 cut(s) 1186, 1510
NheI GCTAGC 1 cut(s) 739
NlaIII CATG 4 cut(s) 43, 126, 304, 1348
NlaIV GGNNCC 4 cut(s) 106, 246, 860, 1262
NmuCI GTSAC 2 cut(s) 58, 794
NsiI ATGCAT 1 cut(s) 697
NspI RCATGY 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 1356
PciI ACATGT 1 cut(s) 39
PciSI GCTCTTC 2 cut(s) 315, 873
PctI GAATGC 3 cut(s) 953, 1379, 1449
PdmI GAANNNNTTC 2 cut(s) 280, 953
PfeI GAWTC 4 cut(s) 164, 178, 476, 1136
PkrI GCNGC 8 cut(s) 514, 703, 827, 858, 1238, 1519, 1531, 1534
PleI GAGTC 4 cut(s) 55, 196, 896, 896
PpsI GAGTC 4 cut(s) 55, 196, 896, 896
PscI ACATGT 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 1520
PspN4I GGNNCC 4 cut(s) 106, 246, 860, 1262
PspPI GGNCC 2 cut(s) 827, 1293
PspXI VCTCGAGB 1 cut(s) 1356
PsrI GAACNNNNNNTAC 2 cut(s) 196, 228
PstNI CAGNNNCTG 1 cut(s) 1070
PvuII CAGCTG 1 cut(s) 1085
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
RseI CAYNNNNRTG 2 cut(s) 582, 1583
SapI GCTCTTC 2 cut(s) 315, 873
SaqAI TTAA 1 cut(s) 894
SatI GCNGC 8 cut(s) 513, 702, 826, 857, 1237, 1518, 1530, 1533
Sau3AI GATC 2 cut(s) 1186, 1510
Sau96I GGNCC 2 cut(s) 827, 1293
SchI GAGTC 4 cut(s) 55, 197, 896, 897
SduI GDGCHC 1 cut(s) 1263
SfaNI GCATC 4 cut(s) 682, 1020, 1021, 1238
SfcI CTRYAG 1 cut(s) 1080
SfiI GGCCNNNNNGGCC 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 1356
SinI GGWCC 1 cut(s) 1293
SlaI CTCGAG 1 cut(s) 1356
SmiMI CAYNNNNRTG 2 cut(s) 582, 1583
SmlI CTYRAG 1 cut(s) 1356
SmoI CTYRAG 1 cut(s) 1356
Sse9I AATT 8 cut(s) 99, 357, 432, 551, 663, 961, 1126, 1326
SsiI CCGC 6 cut(s) 525, 825, 856, 1236, 1490, 1517
SspI AATATT 1 cut(s) 724
SspMI CTAG 4 cut(s) 339, 740, 1362, 1389
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 5 cut(s) 568, 638, 1072, 1265, 1320
TaqI TCGA 3 cut(s) 1185, 1357, 1441
TasI AATT 8 cut(s) 99, 357, 432, 551, 663, 961, 1126, 1326
TauI GCSGC 4 cut(s) 828, 859, 1239, 1520
TfiI GAWTC 4 cut(s) 164, 178, 476, 1136
Tru1I TTAA 1 cut(s) 894
Tru9I TTAA 1 cut(s) 894
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 2 cut(s) 58, 794
TseI GCWGC 4 cut(s) 512, 701, 1529, 1532
Tsp45I GTSAC 2 cut(s) 58, 794
TspDTI ATGAA 1 cut(s) 1230
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 1293
XagI CCTNNNNNAGG 1 cut(s) 1559
XbaI TCTAGA 1 cut(s) 338
XceI RCATGY 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 1356
XmiI GTMKAC 1 cut(s) 1079
XmnI GAANNNNTTC 2 cut(s) 280, 953
XspI CTAG 4 cut(s) 339, 740, 1362, 1389
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.