Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005080

Physical Location & Seq

Genomic Coordinates Forward (+)

49462777 .. 49466015

Gene Structure 3239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0387500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

ATGGCGGTTTCAGCTAATACCTCTCAAATTCCTCACAGCCAACACCTCCCAAATCCTCAGTTCCCCAAAACCCACAAGCTCGAAACCCTAAGCTTCTCCACCAAGCTCCAAAGTCCCCATATTTCTTCTAGAAAAACCCAAGAAATCACTGTCTGCAGCACCTCCTCCATCACCACCACCAACACCAACACCCAGAACCCCAACTCCGACCTAAACGAGCTCTGCCGCCATGGGAACCTCGAGAAAGCTCTGAAGCTCTTGGACTCTATGCAGGAGGTTCAGGTTAAGGTGGAAGAAGATGCTTATGTTGCTTTGGTTAGGCTATGCGAGTGGAAGAGAACACACGAGGATGGGGCTCGTGTGTACAAGTGCATATCGAATTCGATGACCCTTTTGAGCGTCAGGCTTGGTAATGCGTTGTTGAGCATGTTTGTGAGGTTTGGCAATTTGGTTGATGCTTGGTATGTGTTTGGGAGAATGGGTGAGAGGGATGTGTTTTCTTGGAATGTTTTGGTTGGTGGGTATGCGAAAGCCGGGTTTTTCGATGAGGCTTTGAACTTGTATCATAGAATGTTGTGGGTTGGGATTGTGCCTGATGTGTATACATTTCCTTGTGTTCTTAGAACATGTGGGGGAGTGCCGGACTTGGCGAGAGGGAGGGAGATTCATGTGCATGTGATTCGATTTGGGTTTGAATCCGATGTTGATATTGTGAATGCTTTGATTACAATGTATGTGAAATGTGGGGTGGTTGGTAGTGCACGGGTGCTGTTTGATAGAATGCCTAGGAGAGACAGGATTTCGTGGAATGCAATGATTTCGGGGTATTTTGAGAATGGGGAGTATTTGGAAGGACTGAGATTGTTTCTCATGATGCGGGAGTTTTCAGTTGATCCGGATTTGATGACCGTGACTAGCTTGTTATCTGCTTGCGAGGTTCTTGGTGATGACAAGTTAGGGAGGGAAATACATGGTTATGTTTTGAAAACAGAGTTGGTGGACGATGTTTCGGTGTGTAGTTCTTTGATTCAGATGTATTCAGTTGTTGGGGATTTGGGGGAAGCGGAGAAAGTATTTTCCAGGATGGAAGATAAAGATGTGGTGTTATGGACATCGATGATTTCGGGTTATGTGAATAACGCACTGCCTGAGAAGGCTCTGGAAACCTACAAAGTGATGGAGCAGGAGGGTATTTTGCCAGATGAAATAACTATAGCCAGTGTTATATCTGCTTGTGCTTGTTTAGGGAACTTAGATATGGGTATCAAGCTTCATGAGCTTGCTGACAGGACTGGGCTCATATCGTATGTGATAGTTGCTAATACTCTCATTGATATGTATTCTAAGTGTAAATGCATTGACAAAGCATTGGAAGTGTTCCACCAGATCCCAGGAAAGAATGTCATATCTTGGACTTCAGTCATACTCGGCCTTCGGATAAACAATCGGTGCTTTGAGGCTTTAATTTTCTTTCGGCAAATGAAACTCAGGTTAAAACCAAATTCTATTACCTTGGTTTCCGTCCTAGCTGCTTGTGCTAGAATAGGAGCTCTGATGTGTGGAAAGGAGATTCATGCTCATGCACTAAGGAGTGGTGTAGCATTTGATGGTTTTTTACCCAATGCACTTCTTGACATGTATGTAAGGTGTGGAAGGATGGGATCCGCATGGAACCAGTTCAACCATAACAAGAACGATGTCACTGCATGGAATATCATACTAACTGGGTATGCCCAGAGGGGGCAAGGAAGGAATGCCATTGAGCTATTCCACACAATGGCTGAGTCAAGGGTAGACCCAGATGAGATCACATTTATGGCGCTACTATGTGCTTGTAGCAGGTCTGGTATGGTTAGTGAAGGTTTGGAGTATTTCATTAGCATGACACTTAATTATGGCATTACACCTAATCTGAAACACTATGCCTGCATTGTCGATCTACTTGGCCGCGCTGGGCAATTGGCTGAAGCTCGTGAGTTTATACAGAAGATGCCTATAAATCCAGATGCAGCTATCTGGGGAGCCTTTTTAAATGCTTGCGTGATCCACAGGCAGGTTGAACTTGGTGAACTTGCAGCCCAGAAAATATTTGAATTGGATGCCCAAAGTGTAGGGTATTACATACTTATCTGTAACCTTTATGCAGACAGTGGTATGTGGGAAGAAGTTGCAGTGGTAAGAAACATGATGAGGGAGAGGGGGCTAACTGTAGATCCCGGGTGCAGTTGGGTTGAGGTAAAGGGAAAAGTTCATGCTTTCCTAAGTGGCGATAACTTCCACCCTCAAATAGAGGAACTTAATGCAGTTTTGGAGGGATTTTATGAGAAAATGAGATCATTGGCTTTCACAGAGCCAGAAAGTAGGCTTAAAGATGAAGTTGAAGCTTCAAAAGCTGAGATCTTTTGTGGACACAGTGAGAGACTAGCAGTTGCATTTGGCCTCATTAATACAGCCCCGGGGACGCCTATATGGGTGACAAAGAATCTTTATATGTGCCAAAGCTGTCACAGTACTGTCAAATTTATCTCTAAGGTTGTGCGCCGGGAGATTTGTGTAAGGGATACTGAAAAATTCCACCATTTTAAGGATGGCTTCTGTACTTGTGGGGATGAAGGTTATTGGGGAAAGCCAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

879

Amino Acids

98.58

Weight (kDa)

6.04

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	163 - 210	2.4e-09	PPR repeat family
PPR	PF01535	166 - 195	7.8e-07	PPR repeat
PPR_2	PF13041	265 - 311	1.9e-08	PPR repeat family
PPR	PF01535	267 - 295	4.6e-06	PPR repeat
PPR_2	PF13041	365 - 413	3.2e-10	PPR repeat family
PPR_2	PF13041	566 - 613	1.1e-10	PPR repeat family
E_motif	PF20431	683 - 745	2.8e-18	E motif
DYW_deaminase	PF14432	789 - 870	2.8e-30	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17550 AT1G17550 AT1G72770 AT1G72770 AT1G72770 AT1G72770 AT1G72770
fragaria_vesca	FvH4_6g34170 FvH4_6g34170 FvH4_6g34170 FvH4_6g34170
malus_domestica	MD09G1188000.v1.1 MD17G1172400.v1.1
prunus_persica	Prupe.3G044900_v2.0.a1 Prupe.3G044900_v2.0.a1 Prupe.3G044900_v2.0.a1
pyrus_communis	pycom09g10440 pycom17g17010
rosa_chinensis	RchiOBHm_Chr2g0144521
rosa_laevigata	RLG00000020085
rosa_multiflora	Rmu_sc0005789.1_g000006 Rmu_sc0009947.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101240
rosa_rugosa	Rorug02G0387400 Rorug02G0387500
rosa_samantha	Rh2AG439500 Rh2BG449600 Rh2CG426500 Rh2DG459500
rosa_wichuraiana	Rw2G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1830, 2044
AccB7I	CCANNNNNTGG	1 cut(s)	1777
AccI	GTMKAC	2 cut(s)	602, 1794
AccII	CGCG	1 cut(s)	1950
AccIII	TCCGGA	1 cut(s)	895
AciI	CCGC	6 cut(s)	5, 226, 877, 1064, 1665, 1948
AclWI	GGATC	6 cut(s)	887, 1381, 1656, 1669, 2038, 2207
AcoI	YGGCCR	1 cut(s)	1945
AcsI	RAATTY	5 cut(s)	27, 379, 1501, 2519, 2570
AcuI	CTGAAG	3 cut(s)	272, 1401, 1986
AcyI	GRCGYC	1 cut(s)	2462
AfaI	GTAC	3 cut(s)	365, 2512, 2599
AfiI	CCNNNNNNNGG	4 cut(s)	1740, 1777, 2053, 2584
AflIII	ACRYGT	2 cut(s)	626, 1635
AgsI	TTSAA	8 cut(s)	556, 695, 985, 1681, 2060, 2093, 2381, 2388
AjnI	CCWGG	2 cut(s)	1079, 1390
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
Alw21I	GWGCWC	3 cut(s)	222, 763, 1552
Alw26I	GTCTC	2 cut(s)	786, 2413
Alw44I	GTGCAC	1 cut(s)	759
AlwI	GGATC	6 cut(s)	887, 1381, 1656, 1669, 2038, 2207
Ama87I	CYCGRG	3 cut(s)	239, 2216, 2455
Aor13HI	TCCGGA	1 cut(s)	895
AoxI	GGCC	3 cut(s)	1429, 1945, 2437
ApaLI	GTGCAC	1 cut(s)	759
ApeKI	GCWGC	4 cut(s)	156, 1529, 2009, 2075
ApoI	RAATTY	5 cut(s)	27, 379, 1501, 2519, 2570
AseI	ATTAAT	1 cut(s)	2445
Asp700I	GAANNNNTTC	1 cut(s)	1676
AspA2I	CCTAGG	1 cut(s)	785
AspLEI	GCGC	3 cut(s)	1822, 1952, 2541
AsuC2I	CCSGG	6 cut(s)	535, 2217, 2218, 2456, 2457, 2543
AsuHPI	GGTGA	5 cut(s)	163, 494, 956, 2078, 2485
AvaI	CYCGRG	3 cut(s)	239, 2216, 2455
AvrII	CCTAGG	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	1661
BanII	GRGCYC	4 cut(s)	222, 358, 1299, 1552
BauI	CACGAG	3 cut(s)	344, 357, 1971
Bbv12I	GWGCWC	3 cut(s)	222, 763, 1552
BbvI	GCAGC	4 cut(s)	168, 1516, 2021, 2087
BccI	CCATC	7 cut(s)	176, 344, 1078, 1171, 1601, 1651, 2582
BcgI	CGANNNNNNTGC	6 cut(s)	662, 696, 801, 835, 1685, 1719
BciT130I	CCWGG	2 cut(s)	1081, 1392
BciVI	GTATCC	1 cut(s)	2554
BcnI	CCSGG	6 cut(s)	535, 2217, 2218, 2456, 2457, 2543
BcoDI	GTCTC	2 cut(s)	786, 2413
BfaI	CTAG	6 cut(s)	129, 786, 915, 1526, 1539, 2423
BfmI	CTRYAG	3 cut(s)	154, 1212, 2208
BfoI	RGCGCY	1 cut(s)	1823
BfuAI	ACCTGC	2 cut(s)	1830, 2044
BfuI	GTATCC	1 cut(s)	2554
BglII	AGATCT	1 cut(s)	2397
BisI	GCNGC	6 cut(s)	157, 226, 1530, 1948, 2010, 2076
BlnI	CCTAGG	1 cut(s)	785
BlsI	GCNGC	6 cut(s)	158, 227, 1531, 1949, 2011, 2077
BmcAI	AGTACT	1 cut(s)	2512
Bme1390I	CCNGG	8 cut(s)	535, 1081, 1392, 2217, 2218, 2456, 2457, 2543
BmeT110I	CYCGRG	3 cut(s)	239, 2216, 2455
BmiI	GGNNCC	4 cut(s)	236, 1663, 1673, 2023
BmrFI	CCNGG	8 cut(s)	535, 1081, 1392, 2217, 2218, 2456, 2457, 2543
BmrI	ACTGGG	2 cut(s)	1302, 1734
BmsI	GCATC	6 cut(s)	289, 445, 864, 1980, 1996, 2089
BmuI	ACTGGG	2 cut(s)	1302, 1734
BoxI	GACNNNNGTC	1 cut(s)	1418
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	6 cut(s)	535, 2217, 2218, 2456, 2457, 2543
Bsa29I	ATCGAT	1 cut(s)	1115
BsaHI	GRCGYC	1 cut(s)	2462
BsaJI	CCNNGG	8 cut(s)	229, 785, 1390, 1512, 2216, 2454, 2455, 2456
BsaWI	WCCGGW	1 cut(s)	895
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 466, 496
Bsc4I	CCNNNNNNNGG	4 cut(s)	1740, 1777, 2053, 2584
Bse1I	ACTGG	4 cut(s)	1218, 1297, 1675, 1729
Bse3DI	GCAATG	1 cut(s)	819
BseAI	TCCGGA	1 cut(s)	895
BseBI	CCWGG	2 cut(s)	1081, 1392
BseCI	ATCGAT	1 cut(s)	1115
BseDI	CCNNGG	8 cut(s)	229, 785, 1390, 1512, 2216, 2454, 2455, 2456
BseGI	GGATG	7 cut(s)	355, 496, 1089, 1662, 2104, 2593, 2614
BseLI	CCNNNNNNNGG	4 cut(s)	1740, 1777, 2053, 2584
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	6 cut(s)	71, 848, 1140, 1501, 1773, 2385
BseNI	ACTGG	4 cut(s)	1218, 1297, 1675, 1729
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	763
BseXI	GCAGC	4 cut(s)	168, 1516, 2021, 2087
BseYI	CCCAGC	1 cut(s)	1952
BsgI	GTGCAG	1 cut(s)	2242
Bsh1236I	CGCG	1 cut(s)	1950
BshFI	GGCC	3 cut(s)	1431, 1947, 2439
BshVI	ATCGAT	1 cut(s)	1115
BsiHKAI	GWGCWC	3 cut(s)	222, 763, 1552
BsiHKCI	CYCGRG	3 cut(s)	239, 2216, 2455
BsiSI	CCGG	6 cut(s)	534, 641, 896, 2217, 2456, 2542
BslFI	GGGAC	2 cut(s)	99, 2473
BslI	CCNNNNNNNGG	4 cut(s)	1740, 1777, 2053, 2584
BsmAI	GTCTC	2 cut(s)	786, 2413
BsmFI	GGGAC	2 cut(s)	99, 2473
BsmI	GAATGC	4 cut(s)	721, 786, 814, 1759
BsnI	GGCC	3 cut(s)	1431, 1947, 2439
BsoBI	CYCGRG	3 cut(s)	239, 2216, 2455
Bsp1286I	GDGCHC	5 cut(s)	222, 358, 763, 1299, 1552
Bsp13I	TCCGGA	1 cut(s)	895
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	9 cut(s)	892, 1386, 1661, 1806, 1936, 2043, 2212, 2333, 2397
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	6 cut(s)	5, 226, 877, 1064, 1665, 1948
BspANI	GGCC	3 cut(s)	1431, 1947, 2439
BspCNI	CTCAG	6 cut(s)	70, 849, 1141, 1500, 1774, 2386
BspDI	ATCGAT	1 cut(s)	1115
BspEI	TCCGGA	1 cut(s)	895
BspFNI	CGCG	1 cut(s)	1950
BspHI	TCATGA	2 cut(s)	870, 1273
BspLI	GGNNCC	4 cut(s)	236, 1663, 1673, 2023
BspMAI	CTGCAG	1 cut(s)	158
BspMI	ACCTGC	2 cut(s)	1830, 2044
BspPI	GGATC	6 cut(s)	887, 1381, 1656, 1669, 2038, 2207
BsrDI	GCAATG	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	4 cut(s)	1218, 1297, 1675, 1729
BssECI	CCNNGG	8 cut(s)	229, 785, 1390, 1512, 2216, 2454, 2455, 2456
BssMI	GATC	9 cut(s)	892, 1386, 1661, 1806, 1936, 2043, 2212, 2333, 2397
BssNAI	GTATAC	1 cut(s)	603
BssNI	GRCGYC	1 cut(s)	2462
BssSI	CACGAG	3 cut(s)	344, 357, 1971
BssT1I	CCWWGG	3 cut(s)	229, 785, 1512
Bst1107I	GTATAC	1 cut(s)	603
Bst2BI	CACGAG	3 cut(s)	344, 357, 1971
Bst2UI	CCWGG	2 cut(s)	1081, 1392
Bst4CI	ACNGT	7 cut(s)	151, 910, 2150, 2209, 2414, 2510, 2515
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	2462
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	4 cut(s)	931, 1281, 1927, 2038
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	7 cut(s)	355, 496, 1089, 1662, 2104, 2593, 2614
BstFNI	CGCG	1 cut(s)	1950
BstH2I	RGCGCY	1 cut(s)	1823
BstHHI	GCGC	3 cut(s)	1822, 1952, 2541
BstKTI	GATC	9 cut(s)	895, 1389, 1664, 1809, 1939, 2046, 2215, 2336, 2400
BstMAI	GTCTC	2 cut(s)	786, 2413
BstMBI	GATC	9 cut(s)	892, 1386, 1661, 1806, 1936, 2043, 2212, 2333, 2397
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 308, 1276, 1535, 2390
BstNI	CCWGG	2 cut(s)	1081, 1392
BstNSI	RCATGY	4 cut(s)	430, 630, 677, 1639
BstPAI	GACNNNNGTC	1 cut(s)	1418
BstSCI	CCNGG	8 cut(s)	533, 1079, 1390, 2215, 2216, 2454, 2455, 2541
BstSFI	CTRYAG	3 cut(s)	154, 1212, 2208
BstSLI	GKGCMC	1 cut(s)	763
BstUI	CGCG	1 cut(s)	1950
BstV1I	GCAGC	4 cut(s)	168, 1516, 2021, 2087
BstX2I	RGATCY	4 cut(s)	1386, 1661, 2212, 2397
BstYI	RGATCY	4 cut(s)	1386, 1661, 2212, 2397
BstZ17I	GTATAC	1 cut(s)	603
Bsu15I	ATCGAT	1 cut(s)	1115
BsuI	GTATCC	1 cut(s)	2554
BsuRI	GGCC	3 cut(s)	1431, 1947, 2439
BsuTUI	ATCGAT	1 cut(s)	1115
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	7 cut(s)	355, 496, 1089, 1662, 2104, 2593, 2614
BtsI	GCAGTG	3 cut(s)	1142, 1701, 2178
BtsIMutI	CAGTG	7 cut(s)	147, 1142, 1225, 1701, 2155, 2178, 2419
BveI	ACCTGC	2 cut(s)	1830, 2044
Cac8I	GCNNGC	4 cut(s)	931, 1281, 1927, 2038
CciI	TCATGA	2 cut(s)	870, 1273
CfoI	GCGC	3 cut(s)	1822, 1952, 2541
Cfr9I	CCCGGG	2 cut(s)	2216, 2455
ClaI	ATCGAT	1 cut(s)	1115
CseI	GACGC	2 cut(s)	388, 2470
Csp6I	GTAC	3 cut(s)	364, 2511, 2598
CviQI	GTAC	3 cut(s)	364, 2511, 2598
DpnI	GATC	9 cut(s)	894, 1388, 1663, 1808, 1938, 2045, 2214, 2335, 2399
DpnII	GATC	9 cut(s)	892, 1386, 1661, 1806, 1936, 2043, 2212, 2333, 2397
DraI	TTTAAA	1 cut(s)	2031
EaeI	YGGCCR	1 cut(s)	1945
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Ecl136II	GAGCTC	2 cut(s)	220, 1550
Eco130I	CCWWGG	3 cut(s)	229, 785, 1512
Eco24I	GRGCYC	4 cut(s)	222, 358, 1299, 1552
Eco53kI	GAGCTC	2 cut(s)	220, 1550
Eco57I	CTGAAG	3 cut(s)	272, 1401, 1986
Eco88I	CYCGRG	3 cut(s)	239, 2216, 2455
EcoICRI	GAGCTC	2 cut(s)	220, 1550
EcoRI	GAATTC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	1079, 1390
EcoT14I	CCWWGG	3 cut(s)	229, 785, 1512
EcoT22I	ATGCAT	1 cut(s)	1358
EcoT38I	GRGCYC	4 cut(s)	222, 358, 1299, 1552
ErhI	CCWWGG	3 cut(s)	229, 785, 1512
FalI	AAGNNNNNCTT	2 cut(s)	2576, 2608
FaqI	GGGAC	2 cut(s)	99, 2473
FauI	CCCGC	1 cut(s)	870
FblI	GTMKAC	2 cut(s)	602, 1794
Fnu4HI	GCNGC	6 cut(s)	157, 226, 1530, 1948, 2010, 2076
FokI	GGATG	7 cut(s)	362, 503, 1096, 1669, 2111, 2600, 2621
FriOI	GRGCYC	4 cut(s)	222, 358, 1299, 1552
Fsp4HI	GCNGC	6 cut(s)	157, 226, 1530, 1948, 2010, 2076
FspBI	CTAG	6 cut(s)	129, 786, 915, 1526, 1539, 2423
GlaI	GCGC	3 cut(s)	1821, 1951, 2540
GluI	GCNGC	6 cut(s)	157, 226, 1530, 1948, 2010, 2076
GsaI	CCCAGC	1 cut(s)	1956
HaeII	RGCGCY	1 cut(s)	1823
HaeIII	GGCC	3 cut(s)	1431, 1947, 2439
HapII	CCGG	6 cut(s)	534, 641, 896, 2217, 2456, 2542
HgaI	GACGC	2 cut(s)	388, 2470
HhaI	GCGC	3 cut(s)	1822, 1952, 2541
Hin1I	GRCGYC	1 cut(s)	2462
Hin6I	GCGC	3 cut(s)	1820, 1950, 2539
HinP1I	GCGC	3 cut(s)	1820, 1950, 2539
HindIII	AAGCTT	3 cut(s)	91, 1268, 2382
HinfI	GANTC	8 cut(s)	263, 664, 679, 695, 1027, 1570, 1784, 2482
HpaII	CCGG	6 cut(s)	534, 641, 896, 2217, 2456, 2542
HphI	GGTGA	5 cut(s)	163, 494, 956, 2078, 2485
Hpy166II	GTNNAC	7 cut(s)	364, 603, 761, 1000, 1795, 2069, 2408
Hpy188I	TCNGA	7 cut(s)	208, 252, 700, 1032, 1437, 1554, 1914
Hpy188III	TCNNGA	9 cut(s)	129, 241, 871, 896, 1160, 1274, 1631, 1973, 2003
Hpy8I	GTNNAC	7 cut(s)	364, 603, 761, 1000, 1795, 2069, 2408
HpyAV	CCTTC	7 cut(s)	845, 1147, 1442, 1647, 1743, 1853, 2606
HpyCH4III	ACNGT	7 cut(s)	151, 910, 2150, 2209, 2414, 2510, 2515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 308, 1276, 1535, 2390
Hsp92I	GRCGYC	1 cut(s)	2462
HspAI	GCGC	3 cut(s)	1820, 1950, 2539
Kpn2I	TCCGGA	1 cut(s)	895
Kzo9I	GATC	9 cut(s)	892, 1386, 1661, 1806, 1936, 2043, 2212, 2333, 2397
LmnI	GCTCC	4 cut(s)	111, 1180, 1547, 2021
Lsp1109I	GCAGC	4 cut(s)	168, 1516, 2021, 2087
LweI	GCATC	6 cut(s)	289, 445, 864, 1980, 1996, 2089
MaeI	CTAG	6 cut(s)	129, 786, 915, 1526, 1539, 2423
MaeIII	GTNAC	5 cut(s)	910, 1699, 2132, 2473, 2504
MalI	GATC	9 cut(s)	894, 1388, 1663, 1808, 1938, 2045, 2214, 2335, 2399
MboI	GATC	9 cut(s)	892, 1386, 1661, 1806, 1936, 2043, 2212, 2333, 2397
MboII	GAAGA	7 cut(s)	117, 305, 308, 346, 1100, 1999, 2174
MfeI	CAATTG	1 cut(s)	1958
MflI	RGATCY	4 cut(s)	1386, 1661, 2212, 2397
MhlI	GDGCHC	5 cut(s)	222, 358, 763, 1299, 1552
MlyI	GAGTC	2 cut(s)	257, 1793
MmeI	TCCRAC	1 cut(s)	231
Mph1103I	ATGCAT	1 cut(s)	1358
MroI	TCCGGA	1 cut(s)	895
MroXI	GAANNNNTTC	1 cut(s)	1676
MseI	TTAA	9 cut(s)	285, 1463, 1493, 1890, 2030, 2298, 2367, 2445, 2583
MslI	CAYNNNNRTG	8 cut(s)	348, 431, 672, 975, 1334, 1578, 1814, 1880
MspI	CCGG	6 cut(s)	534, 641, 896, 2217, 2456, 2542
MspR9I	CCNGG	8 cut(s)	535, 1081, 1392, 2217, 2218, 2456, 2457, 2543
MunI	CAATTG	1 cut(s)	1958
Mva1269I	GAATGC	4 cut(s)	721, 786, 814, 1759
MvaI	CCWGG	2 cut(s)	1081, 1392
MvnI	CGCG	1 cut(s)	1950
MwoI	GCNNNNNNNGC	5 cut(s)	11, 308, 1276, 1535, 2390
NciI	CCSGG	6 cut(s)	535, 2217, 2218, 2456, 2457, 2543
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	9 cut(s)	892, 1386, 1661, 1806, 1936, 2043, 2212, 2333, 2397
NlaIV	GGNNCC	4 cut(s)	236, 1663, 1673, 2023
NmeAIII	GCCGAG	1 cut(s)	1407
NmuCI	GTSAC	4 cut(s)	910, 1699, 2473, 2504
NsiI	ATGCAT	1 cut(s)	1358
NspI	RCATGY	4 cut(s)	430, 630, 677, 1639
PaeR7I	CTCGAG	1 cut(s)	239
PagI	TCATGA	2 cut(s)	870, 1273
PciI	ACATGT	2 cut(s)	626, 1635
PctI	GAATGC	4 cut(s)	721, 786, 814, 1759
PdmI	GAANNNNTTC	1 cut(s)	1676
PfeI	GAWTC	6 cut(s)	664, 679, 695, 1027, 1570, 2482
PflMI	CCANNNNNTGG	1 cut(s)	1777
PfoI	TCCNGGA	1 cut(s)	1079
PkrI	GCNGC	6 cut(s)	158, 227, 1531, 1949, 2011, 2077
PleI	GAGTC	2 cut(s)	257, 1792
PpsI	GAGTC	2 cut(s)	257, 1792
PscI	ACATGT	2 cut(s)	626, 1635
PshAI	GACNNNNGTC	1 cut(s)	1418
PshBI	ATTAAT	1 cut(s)	2445
Psp124BI	GAGCTC	2 cut(s)	222, 1552
Psp6I	CCWGG	2 cut(s)	1079, 1390
PspFI	CCCAGC	1 cut(s)	1952
PspGI	CCWGG	2 cut(s)	1079, 1390
PspN4I	GGNNCC	4 cut(s)	236, 1663, 1673, 2023
PstI	CTGCAG	1 cut(s)	158
PsuI	RGATCY	4 cut(s)	1386, 1661, 2212, 2397
RsaI	GTAC	3 cut(s)	365, 2512, 2599
RsaNI	GTAC	3 cut(s)	364, 2511, 2598
RseI	CAYNNNNRTG	8 cut(s)	348, 431, 672, 975, 1334, 1578, 1814, 1880
SacI	GAGCTC	2 cut(s)	222, 1552
SaqAI	TTAA	9 cut(s)	285, 1463, 1493, 1890, 2030, 2298, 2367, 2445, 2583
SatI	GCNGC	6 cut(s)	157, 226, 1530, 1948, 2010, 2076
Sau3AI	GATC	9 cut(s)	892, 1386, 1661, 1806, 1936, 2043, 2212, 2333, 2397
ScaI	AGTACT	1 cut(s)	2512
SchI	GAGTC	2 cut(s)	257, 1793
ScrFI	CCNGG	8 cut(s)	535, 1081, 1392, 2217, 2218, 2456, 2457, 2543
SduI	GDGCHC	5 cut(s)	222, 358, 763, 1299, 1552
SfaNI	GCATC	6 cut(s)	289, 445, 864, 1980, 1996, 2089
SfcI	CTRYAG	3 cut(s)	154, 1212, 2208
Sfr274I	CTCGAG	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	239
SmaI	CCCGGG	2 cut(s)	2218, 2457
SmiMI	CAYNNNNRTG	8 cut(s)	348, 431, 672, 975, 1334, 1578, 1814, 1880
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SsiI	CCGC	6 cut(s)	5, 226, 877, 1064, 1665, 1948
SspI	AATATT	1 cut(s)	2088
SspMI	CTAG	6 cut(s)	129, 786, 915, 1526, 1539, 2423
SstI	GAGCTC	2 cut(s)	222, 1552
StyD4I	CCNGG	8 cut(s)	533, 1079, 1390, 2215, 2216, 2454, 2455, 2541
StyI	CCWWGG	3 cut(s)	229, 785, 1512
TaaI	ACNGT	7 cut(s)	151, 910, 2150, 2209, 2414, 2510, 2515
TaqI	TCGA	8 cut(s)	81, 240, 377, 383, 543, 682, 1115, 1935
TatI	WGTACW	3 cut(s)	363, 2510, 2597
TauI	GCSGC	2 cut(s)	228, 1950
TfiI	GAWTC	6 cut(s)	664, 679, 695, 1027, 1570, 2482
Tru1I	TTAA	9 cut(s)	285, 1463, 1493, 1890, 2030, 2298, 2367, 2445, 2583
Tru9I	TTAA	9 cut(s)	285, 1463, 1493, 1890, 2030, 2298, 2367, 2445, 2583
TscAI	CASTG	7 cut(s)	154, 1149, 1225, 1708, 2155, 2178, 2419
TseFI	GTSAC	4 cut(s)	910, 1699, 2473, 2504
TseI	GCWGC	4 cut(s)	156, 1529, 2009, 2075
Tsp45I	GTSAC	4 cut(s)	910, 1699, 2473, 2504
TspDTI	ATGAA	9 cut(s)	656, 1218, 1262, 1496, 1562, 1864, 2240, 2388, 2625
TspGWI	ACGGA	1 cut(s)	1510
TspMI	CCCGGG	2 cut(s)	2216, 2455
TspRI	CASTG	7 cut(s)	154, 1149, 1225, 1708, 2155, 2178, 2419
Van91I	CCANNNNNTGG	1 cut(s)	1777
VneI	GTGCAC	1 cut(s)	759
VspI	ATTAAT	1 cut(s)	2445
XapI	RAATTY	5 cut(s)	27, 379, 1501, 2519, 2570
XbaI	TCTAGA	1 cut(s)	128
XceI	RCATGY	4 cut(s)	430, 630, 677, 1639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2585
XhoI	CTCGAG	1 cut(s)	239
XmaI	CCCGGG	2 cut(s)	2216, 2455
XmaJI	CCTAGG	1 cut(s)	785
XmiI	GTMKAC	2 cut(s)	602, 1794
XmnI	GAANNNNTTC	1 cut(s)	1676
XspI	CTAG	6 cut(s)	129, 786, 915, 1526, 1539, 2423
ZrmI	AGTACT	1 cut(s)	2512
Zsp2I	ATGCAT	1 cut(s)	1358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.