AT1G17620

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016539
Physical Location & Seq
Forward (+)
6061895 .. 6063362
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17620.1

Sequence Viewer

Length: 795 bp
ATGACAGACGACAGAGTTTACCCTGCATCAAAACCTCCCGCCATCGTCGGTGGCGGTGCCCCAACCACCAATCCAACTTTCCCGGCGAACAAAGCTCAGCTCTACAACGCAAATCGTCCCGCTTACCGTCCACCAGCTGGTCGTCGTCGTACTAGCCATACCCGTGGATGTTGCTGCCGTTGCTGTTGCTGGACGATATTCGTAATCATCCTCTTACTCCTCATCGTCGCCGCCGCATCAGCCGTCGTATACCTAATCTACCGTCCTCAACGACCTAGCTTCACCGTCTCTGAACTCAAAATCTCCACTCTCAACTTCACATCCGCCGTTCGCCTCACCACCGCCATTTCCCTCTCCGTCATCGCCAGAAACCCTAACAAAAACGTTGGATTCATCTACGACGTCACCGACATCACACTCTACAAAGCATCCACCGGAGGAGATGATGACGTAGTCATTGGTAAAGGAACGATCGCGGCGTTTTCTCACGGGAAGAAGAACACGACTACGCTTAGAAGTACGATCGGAAGTCCTCCGGATGAACTCGATGAGATCTCGGCGGGTAAGCTGAAAGGAGATCTGAAGGCGAAGAAAGCAGTGGCGATTAAGATTGTTTTGAACTCGAAGGTGAAAGTGAAGATGGGAGCTCTAAAAACTCCTAAATCAGGAATTAGGGTTACTTGTGAAGGGATTAAAGTGGTGGCTCCGACGGGAAAGAAGGCGACGACGGCTACGACTTCCGCCGCTAAGTGTAAGGTTGATCCAAGATTTAAGATCTGGAAAATTACTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

264

Amino Acids

28.29

Weight (kDa)

10.05

Isoelectric Point (pI)

22.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17620
fragaria_vesca FvH4_6g33440
malus_domestica MD09G1193000.v1.1
prunus_persica Prupe.3G049400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0143331
rosa_laevigata RLG00000020027
rosa_multiflora Rmu_sc0003507.1_g000008
rosa_roxburghii Rroxscaffold_2G00101970
rosa_rugosa Rorug02G0380600
rosa_samantha Rh2AG433400 Rh2BG441500 Rh2CG419200 Rh2DG451600
rosa_wichuraiana Rw2G035340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 137
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 476
AccIII TCCGGA 1 cut(s) 535
AclI AACGTT 1 cut(s) 384
AclWI GGATC 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 602
AcyI GRCGYC 1 cut(s) 402
AfaI GTAC 2 cut(s) 151, 520
AfiI CCNNNNNNNGG 2 cut(s) 137, 665
AgsI TTSAA 1 cut(s) 619
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 6 cut(s) 95, 100, 137, 279, 568, 647
AluI AGCT 6 cut(s) 95, 100, 137, 279, 568, 647
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 1 cut(s) 755
Aor13HI TCCGGA 1 cut(s) 535
ApeKI GCWGC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 4 cut(s) 274, 328, 397, 640
BaeGI GKGCMC 1 cut(s) 61
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 1 cut(s) 161
BccI CCATC 2 cut(s) 50, 634
BceAI ACGGC 4 cut(s) 162, 227, 311, 744
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 153, 276
BglII AGATCT 3 cut(s) 552, 577, 774
BisI GCNGC 5 cut(s) 175, 231, 234, 477, 744
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 5 cut(s) 176, 232, 235, 478, 745
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 2 cut(s) 58, 705
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 3 cut(s) 35, 245, 437
Bpu1102I GCTNAGC 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 2 cut(s) 434, 535
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 665
BseAI TCCGGA 1 cut(s) 535
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 5 cut(s) 173, 207, 320, 428, 544
BseLI CCNNNNNNNGG 2 cut(s) 137, 665
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 2 cut(s) 209, 453
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 476
Bsh1285I CGRYCG 2 cut(s) 474, 525
BshNI GGYRCC 1 cut(s) 56
BsiEI CGRYCG 2 cut(s) 474, 525
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 3 cut(s) 83, 435, 536
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 137, 665
BsmAI GTCTC 1 cut(s) 292
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 61, 649
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 6 cut(s) 471, 522, 552, 577, 760, 774
Bsp1720I GCTNAGC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 109
BspEI TCCGGA 1 cut(s) 535
BspFNI CGCG 1 cut(s) 476
BspLI GGNNCC 2 cut(s) 58, 705
BspPI GGATC 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 6 cut(s) 471, 522, 552, 577, 760, 774
BssNAI GTATAC 1 cut(s) 250
BssNI GRCGYC 1 cut(s) 402
Bst1107I GTATAC 1 cut(s) 250
Bst4CI ACNGT 3 cut(s) 128, 263, 286
BstACI GRCGYC 1 cut(s) 402
BstDEI CTNAG 3 cut(s) 96, 512, 747
BstDSI CCRYGG 1 cut(s) 163
BstENI CCTNNNNNAGG 1 cut(s) 663
BstF5I GGATG 5 cut(s) 173, 207, 320, 428, 544
BstFNI CGCG 1 cut(s) 476
BstKTI GATC 6 cut(s) 474, 525, 555, 580, 763, 777
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 6 cut(s) 471, 522, 552, 577, 760, 774
BstMCI CGRYCG 2 cut(s) 474, 525
BstMWI GCNNNNNNNGC 5 cut(s) 92, 180, 239, 593, 728
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 61
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 161
BstX2I RGATCY 3 cut(s) 552, 577, 774
BstXI CCANNNNNNTGG 1 cut(s) 164
BstYI RGATCY 3 cut(s) 552, 577, 774
BstZ17I GTATAC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 346
BtsCI GGATG 5 cut(s) 173, 207, 320, 428, 544
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 1 cut(s) 603
Csp6I GTAC 2 cut(s) 150, 519
CviQI GTAC 2 cut(s) 150, 519
DdeI CTNAG 3 cut(s) 96, 512, 747
DpnI GATC 6 cut(s) 473, 524, 554, 579, 762, 776
DpnII GATC 6 cut(s) 471, 522, 552, 577, 760, 774
EciI GGCGGA 2 cut(s) 313, 730
Ecl136II GAGCTC 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 649
Eco53kI GAGCTC 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 602
EcoICRI GAGCTC 1 cut(s) 647
EcoNI CCTNNNNNAGG 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 649
Esp3I CGTCTC 1 cut(s) 292
FaiI YATR 2 cut(s) 159, 250
FaqI GGGAC 1 cut(s) 102
FauI CCCGC 3 cut(s) 46, 127, 553
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 175, 231, 234, 477, 744
FokI GGATG 5 cut(s) 180, 194, 307, 415, 551
FriOI GRGCYC 1 cut(s) 649
Fsp4HI GCNGC 5 cut(s) 175, 231, 234, 477, 744
FspBI CTAG 2 cut(s) 153, 276
GluI GCNGC 5 cut(s) 175, 231, 234, 477, 744
HapII CCGG 3 cut(s) 83, 435, 536
Hin1I GRCGYC 1 cut(s) 402
HinfI GANTC 1 cut(s) 390
HpaII CCGG 3 cut(s) 83, 435, 536
HphI GGTGA 4 cut(s) 274, 328, 397, 640
Hpy166II GTNNAC 3 cut(s) 19, 131, 250
Hpy188I TCNGA 4 cut(s) 292, 527, 582, 708
Hpy188III TCNNGA 3 cut(s) 536, 666, 778
Hpy8I GTNNAC 3 cut(s) 19, 131, 250
Hpy99I CGWCG 9 cut(s) 50, 147, 150, 230, 248, 404, 712, 727, 730
HpyAV CCTTC 4 cut(s) 577, 619, 680, 712
HpyCH4III ACNGT 3 cut(s) 128, 263, 286
HpyCH4IV ACGT 3 cut(s) 384, 402, 450
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 180, 239, 593, 728
HpyF3I CTNAG 3 cut(s) 96, 512, 747
HpySE526I ACGT 3 cut(s) 384, 402, 450
Hsp92I GRCGYC 1 cut(s) 402
Kpn2I TCCGGA 1 cut(s) 535
Kzo9I GATC 6 cut(s) 471, 522, 552, 577, 760, 774
LmnI GCTCC 2 cut(s) 644, 709
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 3 cut(s) 35, 245, 437
MaeI CTAG 2 cut(s) 153, 276
MaeII ACGT 3 cut(s) 384, 402, 450
MaeIII GTNAC 2 cut(s) 403, 676
MalI GATC 6 cut(s) 473, 524, 554, 579, 762, 776
MboI GATC 6 cut(s) 471, 522, 552, 577, 760, 774
MboII GAAGA 4 cut(s) 505, 508, 601, 649
MflI RGATCY 3 cut(s) 552, 577, 774
MhlI GDGCHC 2 cut(s) 61, 649
MluCI AATT 2 cut(s) 669, 783
MmeI TCCRAC 3 cut(s) 98, 367, 731
MnlI CCTC 8 cut(s) 45, 221, 230, 276, 344, 362, 431, 543
MroI TCCGGA 1 cut(s) 535
MseI TTAA 3 cut(s) 606, 693, 771
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 83, 435, 536
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 5 cut(s) 92, 180, 239, 593, 728
NciI CCSGG 1 cut(s) 83
NdeII GATC 6 cut(s) 471, 522, 552, 577, 760, 774
NlaIV GGNNCC 2 cut(s) 58, 705
NmeAIII GCCGAG 1 cut(s) 536
NmuCI GTSAC 1 cut(s) 403
PcsI WCGNNNNNNNCGW 3 cut(s) 405, 476, 731
PfeI GAWTC 1 cut(s) 390
PflFI GACNNNGTC 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 5 cut(s) 176, 232, 235, 478, 745
Ple19I CGATCG 2 cut(s) 474, 525
Psp124BI GAGCTC 1 cut(s) 649
Psp1406I AACGTT 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 58, 705
PsuI RGATCY 3 cut(s) 552, 577, 774
PsyI GACNNNGTC 1 cut(s) 452
PvuI CGATCG 2 cut(s) 474, 525
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 151, 520
RsaNI GTAC 2 cut(s) 150, 519
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 1 cut(s) 649
SaqAI TTAA 3 cut(s) 606, 693, 771
SatI GCNGC 5 cut(s) 175, 231, 234, 477, 744
Sau3AI GATC 6 cut(s) 471, 522, 552, 577, 760, 774
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 2 cut(s) 61, 649
SfaNI GCATC 3 cut(s) 35, 245, 437
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 2 cut(s) 669, 783
SspMI CTAG 2 cut(s) 153, 276
SstI GAGCTC 1 cut(s) 649
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 3 cut(s) 128, 263, 286
TaiI ACGT 3 cut(s) 387, 405, 453
TaqI TCGA 2 cut(s) 546, 623
TasI AATT 2 cut(s) 669, 783
TauI GCSGC 4 cut(s) 233, 236, 479, 746
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 3 cut(s) 606, 693, 771
Tru9I TTAA 3 cut(s) 606, 693, 771
TscAI CASTG 1 cut(s) 603
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 2 cut(s) 382, 555
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 1 cut(s) 603
Tth111I GACNNNGTC 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 663
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 2 cut(s) 153, 276
ZraI GACGTC 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.