MD09G1193000.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016539
Physical Location & Seq
Reverse (-)
17235452 .. 17238242
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1193000.v1.1.491

Sequence Viewer

Length: 765 bp
ATGGCTGACAGAGTCTACCCTGCAGCCAAACCCCCCACCGACGCCGTTCCCACCGCCACAAACCCCGCCTTCCCCGCCACAAAGGCCCAACTCTACAGCAACACGCGCCCAGCCTACCGTCCCCAACCACACCACCGCCGCCGCAGCCGCAGCCGCTGCTGCTCCTGCTGCCTCTGGATCATCTTCATCATCCTCCTCCAACTTGTCATTGCGGCCATCTTTGGCGCAGTCTTCTACGTCCTTTACCGCCCTCACCGCCCCACCTTCTCCGTCACCGCCCTCAAACTCCAAACCCTAAACATCACCACCAACAACCAGCTCACCTCCAGCTTCAACCTCAACATCACTGCTCGAAACCCTAACAAGAAACTCGTCTTCTTCTACAACCCCATCGCTGTCTCCATCTATTCTAACGACGTAGATGTCGCCGACGGAGTCATTCCCGCCTTCGTGCATGGGAAGAAGAACACGACGCTGCTGAAGGCTAAAATTTCTAGCAGCGGCAAAGACCTCGATAGCAGCGAAGTGAGCACTTTGAAGGCTGAAATGAAGAGCAAAAACGGGCTGCCGTTGAGGATGAGGTTGGACACCAGGGTAAGAGTGAAGGTTTTCGGGTTAAAGACTCCGAAAATGGGGATTAGGGTTAAGTGTGACGGGATTAGGGTCACTTCTCTTCCTACTGCTAAAGCTCCTGCCACTGCGTCTACCTCCAACGCCAAGTGTAAGGTTAATCTTCGAGTCAAGATCTGGAAATGGACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

255

Amino Acids

28.22

Weight (kDa)

10.47

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 115 - 217 1.1e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17620
fragaria_vesca FvH4_6g33440
malus_domestica MD09G1193000.v1.1
prunus_persica Prupe.3G049400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0143331
rosa_laevigata RLG00000020027
rosa_multiflora Rmu_sc0003507.1_g000008
rosa_roxburghii Rroxscaffold_2G00101970
rosa_rugosa Rorug02G0380600
rosa_samantha Rh2AG433400 Rh2BG441500 Rh2CG419200 Rh2DG451600
rosa_wichuraiana Rw2G035340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 422
AccI GTMKAC 2 cut(s) 15, 704
AccII CGCG 1 cut(s) 106
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 489
AcuI CTGAAG 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 632
AgsI TTSAA 2 cut(s) 334, 538
AjnI CCWGG 1 cut(s) 590
AluBI AGCT 3 cut(s) 319, 330, 689
AluI AGCT 3 cut(s) 319, 330, 689
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 2 cut(s) 84, 213
ApoI RAATTY 1 cut(s) 489
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 2 cut(s) 108, 227
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 4 cut(s) 245, 265, 295, 313
BbsI GAAGAC 2 cut(s) 223, 367
Bbv12I GWGCWC 1 cut(s) 533
BccI CCATC 3 cut(s) 224, 398, 410
BceAI ACGGC 2 cut(s) 29, 553
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BciT130I CCWGG 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 2 cut(s) 21, 94
BglI GCCNNNNNGGC 1 cut(s) 83
BglII AGATCT 1 cut(s) 744
Bme1390I CCNGG 1 cut(s) 592
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 592
BpiI GAAGAC 2 cut(s) 223, 367
BpmI CTGGAG 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 591
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 592
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 2 cut(s) 189, 582
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 185
BseYI CCCAGC 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 2 cut(s) 86, 215
BsiHKAI GWGCWC 1 cut(s) 533
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 2 cut(s) 86, 215
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 2 cut(s) 177, 744
BspANI GGCC 2 cut(s) 86, 215
BspFNI CGCG 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 185
BspQI GCTCTTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 2 cut(s) 177, 744
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 592
Bst4CI ACNGT 2 cut(s) 119, 760
Bst6I CTCTTC 2 cut(s) 545, 678
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 156
BstF5I GGATG 2 cut(s) 189, 582
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 2 cut(s) 108, 227
BstKTI GATC 2 cut(s) 180, 747
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 2 cut(s) 177, 744
BstNI CCWGG 1 cut(s) 592
BstSCI CCNGG 1 cut(s) 590
BstSFI CTRYAG 2 cut(s) 21, 94
BstUI CGCG 1 cut(s) 106
BstV2I GAAGAC 2 cut(s) 223, 367
BstX2I RGATCY 1 cut(s) 744
BstYI RGATCY 1 cut(s) 744
BsuRI GGCC 2 cut(s) 86, 215
BtgZI GCGATG 1 cut(s) 376
BtsCI GGATG 2 cut(s) 189, 582
BtsI GCAGTG 2 cut(s) 345, 696
BtsIMutI CAGTG 2 cut(s) 345, 696
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 2 cut(s) 108, 227
Cfr13I GGNCC 1 cut(s) 85
CseI GACGC 3 cut(s) 50, 481, 690
CviAII CATG 1 cut(s) 455
DpnI GATC 2 cut(s) 179, 746
DpnII GATC 2 cut(s) 177, 744
DrdI GACNNNNNNGTC 1 cut(s) 422
DseDI GACNNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 545, 678
EarI CTCTTC 2 cut(s) 545, 678
Eco57I CTGAAG 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 590
FaeI CATG 1 cut(s) 458
FaiI YATR 1 cut(s) 456
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 454
FauI CCCGC 3 cut(s) 73, 82, 451
FblI GTMKAC 2 cut(s) 15, 704
FokI GGATG 2 cut(s) 176, 589
FspBI CTAG 1 cut(s) 495
GlaI GCGC 2 cut(s) 107, 226
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 2 cut(s) 86, 215
HgaI GACGC 3 cut(s) 50, 481, 690
HhaI GCGC 2 cut(s) 108, 227
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 1 cut(s) 458
Hin6I GCGC 2 cut(s) 106, 225
HinP1I GCGC 2 cut(s) 106, 225
HinfI GANTC 4 cut(s) 12, 435, 622, 738
HphI GGTGA 4 cut(s) 245, 265, 295, 313
Hpy166II GTNNAC 2 cut(s) 16, 705
Hpy188I TCNGA 1 cut(s) 627
Hpy188III TCNNGA 3 cut(s) 175, 742, 748
Hpy8I GTNNAC 2 cut(s) 16, 705
Hpy99I CGWCG 4 cut(s) 44, 419, 434, 475
HpyAV CCTTC 6 cut(s) 79, 274, 457, 475, 532, 598
HpyCH4III ACNGT 2 cut(s) 119, 760
HpyCH4IV ACGT 2 cut(s) 237, 417
HpyCH4V TGCA 2 cut(s) 23, 454
HpySE526I ACGT 2 cut(s) 237, 417
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 1 cut(s) 458
HspAI GCGC 2 cut(s) 106, 225
Kzo9I GATC 2 cut(s) 177, 744
LguI GCTCTTC 1 cut(s) 545
LmnI GCTCC 2 cut(s) 167, 694
MaeI CTAG 1 cut(s) 495
MaeII ACGT 2 cut(s) 237, 417
MaeIII GTNAC 3 cut(s) 271, 650, 664
MalI GATC 2 cut(s) 179, 746
MboI GATC 2 cut(s) 177, 744
MboII GAAGA 9 cut(s) 175, 223, 367, 370, 472, 475, 562, 665, 725
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 1 cut(s) 489
MlyI GAGTC 4 cut(s) 21, 444, 616, 747
MmeI TCCRAC 3 cut(s) 223, 564, 735
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 3 cut(s) 617, 645, 729
MspA1I CMGCKG 2 cut(s) 156, 501
MspR9I CCNGG 1 cut(s) 592
MvaI CCWGG 1 cut(s) 592
MvnI CGCG 1 cut(s) 106
NdeII GATC 2 cut(s) 177, 744
NlaIII CATG 1 cut(s) 458
NmuCI GTSAC 3 cut(s) 271, 650, 664
PciSI GCTCTTC 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 608
PflFI GACNNNGTC 2 cut(s) 11, 434
PleI GAGTC 4 cut(s) 20, 443, 616, 746
PpsI GAGTC 4 cut(s) 20, 443, 616, 746
Psp6I CCWGG 1 cut(s) 590
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 590
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 744
PsyI GACNNNGTC 2 cut(s) 11, 434
SapI GCTCTTC 1 cut(s) 545
SaqAI TTAA 3 cut(s) 617, 645, 729
Sau3AI GATC 2 cut(s) 177, 744
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 4 cut(s) 21, 444, 616, 747
ScrFI CCNGG 1 cut(s) 592
SduI GDGCHC 1 cut(s) 533
SfcI CTRYAG 2 cut(s) 21, 94
Sse9I AATT 1 cut(s) 489
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 590
TaaI ACNGT 2 cut(s) 119, 760
TaiI ACGT 2 cut(s) 240, 420
TaqI TCGA 3 cut(s) 352, 513, 736
TasI AATT 1 cut(s) 489
TauI GCSGC 6 cut(s) 141, 144, 150, 156, 215, 504
Tru1I TTAA 3 cut(s) 617, 645, 729
Tru9I TTAA 3 cut(s) 617, 645, 729
TscAI CASTG 2 cut(s) 352, 703
TseFI GTSAC 3 cut(s) 271, 650, 664
Tsp45I GTSAC 3 cut(s) 271, 650, 664
TspDTI ATGAA 2 cut(s) 175, 563
TspGWI ACGGA 2 cut(s) 259, 447
TspRI CASTG 2 cut(s) 352, 703
Tth111I GACNNNGTC 2 cut(s) 11, 434
XapI RAATTY 1 cut(s) 489
XmiI GTMKAC 2 cut(s) 15, 704
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.