FvH4_6g33440

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016539
Physical Location & Seq
Forward (+)
26465469 .. 26466899
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33440.t1

Sequence Viewer

Length: 765 bp
ATGACAGACAGAGTCTACCCATCAGCGAAGCCCGCCACCAACGGCGCGGCCGCTCCAAACCCAGCCTTCCCCGCCACGAAAGCGCAGCTCTACAGCAACACGCGCCCTGCCTACCGCCCTCAACCCCACCGCCACCGCCGCAGTCGCAGCCGCTGCTGCTCTTGCTGCCTATGGATCATTTTCCTTCTCATCCTCCAAATCTTCATTGGAGCCATATGCGGTGCTGTTTTCTACCTCATTTACAAGCCTCACCGCCCCACCTTCTCCGTCACCTCCCTCAAGCTCTCCACCCTCAACCTCACCTCCTCCTCCAAGCTCAACTCCCGCTTCGACATCAACGTCACCGCTCGGAACCCCAACAAGAAACTCGTCTTCCTCTACAACCCCATCGCCATTTCCATCCTCTCAAAGGACGATATCGACGTCGGTGACGGATCCATACCGGCTTTCACTCACGGGAAGAAGAACACGACTCTCTTGAAGGCTAGGATTACAAGCAGCGGCAAAACCCTAGAGAGCAGCGACGTCAACACGTTGAAGGCCGAGATGAAGAGCAAGGCTGGGTTGGCACTGAAGGTGAGGCTTGACACCAGAGTAAGAGTGAAAGTTTTCGGAGTGAAGACTCCGAAAATCGGAATTAGGGTTCATTGCGAAGGGGTTAAGGTTACTTCTCTTCCTACTGCAAAAGCTGCTGCGACGGCTTCGACTAGCAATGCCAAGTGCAAGGTTGATGTTAGAGTCAAGATCTGGAAATGGACTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

255

Amino Acids

27.9

Weight (kDa)

10.38

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 114 - 217 1.9e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17620
fragaria_vesca FvH4_6g33440
malus_domestica MD09G1193000.v1.1
prunus_persica Prupe.3G049400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0143331
rosa_laevigata RLG00000020027
rosa_multiflora Rmu_sc0003507.1_g000008
rosa_roxburghii Rroxscaffold_2G00101970
rosa_rugosa Rorug02G0380600
rosa_samantha Rh2AG433400 Rh2BG441500 Rh2CG419200 Rh2DG451600
rosa_wichuraiana Rw2G035340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AatII GACGTC 2 cut(s) 426, 528
AccBSI CCGCTC 2 cut(s) 53, 347
AccI GTMKAC 1 cut(s) 15
AccII CGCG 2 cut(s) 47, 103
AclWI GGATC 3 cut(s) 182, 429, 442
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 593
AcyI GRCGYC 2 cut(s) 423, 525
AfiI CCNNNNNNNGG 2 cut(s) 409, 632
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 2 cut(s) 481, 538
AloI GAACNNNNNNTCC 2 cut(s) 627, 659
AluBI AGCT 4 cut(s) 88, 283, 316, 689
AluI AGCT 4 cut(s) 88, 283, 316, 689
AlwI GGATC 3 cut(s) 182, 429, 442
AlwNI CAGNNNCTG 1 cut(s) 153
AoxI GGCC 2 cut(s) 48, 540
ApeKI GCWGC 9 cut(s) 85, 147, 153, 156, 165, 498, 519, 689, 692
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 3 cut(s) 47, 85, 105
AsuHPI GGTGA 6 cut(s) 242, 262, 292, 334, 440, 589
BamHI GGATCC 1 cut(s) 434
BbsI GAAGAC 2 cut(s) 364, 626
BbvI GCAGC 9 cut(s) 97, 140, 143, 152, 159, 510, 531, 676, 679
BccI CCATC 3 cut(s) 28, 395, 407
BceAI ACGGC 2 cut(s) 58, 714
BfaI CTAG 3 cut(s) 486, 512, 708
BfmI CTRYAG 1 cut(s) 91
BglII AGATCT 1 cut(s) 744
BmiI GGNNCC 3 cut(s) 211, 353, 436
BpiI GAAGAC 2 cut(s) 364, 626
BpuEI CTTGAG 1 cut(s) 263
BsaHI GRCGYC 2 cut(s) 423, 525
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 632
Bse118I RCCGGY 1 cut(s) 442
Bse3DI GCAATG 2 cut(s) 646, 718
BseGI GGATG 2 cut(s) 189, 399
BseLI CCNNNNNNNGG 2 cut(s) 409, 632
BseMI GCAATG 2 cut(s) 646, 718
BseRI GAGGAG 2 cut(s) 295, 298
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 9 cut(s) 97, 140, 143, 152, 159, 510, 531, 676, 679
BseYI CCCAGC 2 cut(s) 61, 560
Bsh1236I CGCG 2 cut(s) 47, 103
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 50, 542
BsiEI CGRYCG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 2 cut(s) 409, 632
BsnI GGCC 2 cut(s) 50, 542
Bsp143I GATC 3 cut(s) 174, 434, 744
BspANI GGCC 2 cut(s) 50, 542
BspFNI CGCG 2 cut(s) 47, 103
BspLI GGNNCC 3 cut(s) 211, 353, 436
BspPI GGATC 3 cut(s) 182, 429, 442
BspQI GCTCTTC 1 cut(s) 545
BsrBI CCGCTC 2 cut(s) 53, 347
BsrDI GCAATG 2 cut(s) 646, 718
BsrFI RCCGGY 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 442
BssMI GATC 3 cut(s) 174, 434, 744
BssNI GRCGYC 2 cut(s) 423, 525
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 2 cut(s) 545, 678
BstACI GRCGYC 2 cut(s) 423, 525
BstAPI GCANNNNNTGC 2 cut(s) 153, 689
BstC8I GCNNGC 1 cut(s) 33
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 189, 399
BstFNI CGCG 2 cut(s) 47, 103
BstHHI GCGC 3 cut(s) 47, 85, 105
BstKTI GATC 3 cut(s) 177, 437, 747
BstMBI GATC 3 cut(s) 174, 434, 744
BstMCI CGRYCG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 2 cut(s) 47, 103
BstV1I GCAGC 9 cut(s) 97, 140, 143, 152, 159, 510, 531, 676, 679
BstV2I GAAGAC 2 cut(s) 364, 626
BstX2I RGATCY 2 cut(s) 434, 744
BstYI RGATCY 2 cut(s) 434, 744
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 2 cut(s) 50, 542
BtgZI GCGATG 1 cut(s) 373
BtsCI GGATG 2 cut(s) 189, 399
BtsIMutI CAGTG 1 cut(s) 569
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 153
CciNI GCGGCCGC 1 cut(s) 48
CfoI GCGC 3 cut(s) 47, 85, 105
Cfr10I RCCGGY 1 cut(s) 442
DpnI GATC 3 cut(s) 176, 436, 746
DpnII GATC 3 cut(s) 174, 434, 744
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 545, 678
EarI CTCTTC 2 cut(s) 545, 678
EclXI CGGCCG 1 cut(s) 48
Eco32I GATATC 1 cut(s) 418
Eco52I CGGCCG 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 593
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoRV GATATC 1 cut(s) 418
FaiI YATR 5 cut(s) 172, 215, 217, 440, 763
FauI CCCGC 3 cut(s) 40, 79, 332
FauNDI CATATG 1 cut(s) 215
FblI GTMKAC 1 cut(s) 15
FokI GGATG 2 cut(s) 176, 386
FspBI CTAG 3 cut(s) 486, 512, 708
GlaI GCGC 3 cut(s) 46, 84, 104
GsaI CCCAGC 2 cut(s) 65, 564
HaeIII GGCC 2 cut(s) 50, 542
HapII CCGG 1 cut(s) 443
HhaI GCGC 3 cut(s) 47, 85, 105
Hin1I GRCGYC 2 cut(s) 423, 525
Hin6I GCGC 3 cut(s) 45, 83, 103
HinP1I GCGC 3 cut(s) 45, 83, 103
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 4 cut(s) 12, 472, 622, 738
HpaII CCGG 1 cut(s) 443
HphI GGTGA 6 cut(s) 242, 262, 292, 334, 440, 589
Hpy166II GTNNAC 2 cut(s) 16, 529
Hpy188I TCNGA 4 cut(s) 351, 614, 627, 635
Hpy188III TCNNGA 3 cut(s) 478, 742, 748
Hpy8I GTNNAC 2 cut(s) 16, 529
Hpy99I CGWCG 4 cut(s) 425, 428, 527, 700
HpyAV CCTTC 7 cut(s) 76, 194, 271, 475, 532, 568, 647
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4IV ACGT 4 cut(s) 339, 423, 525, 533
HpyCH4V TGCA 2 cut(s) 683, 723
HpySE526I ACGT 4 cut(s) 339, 423, 525, 533
Hsp92I GRCGYC 2 cut(s) 423, 525
HspAI GCGC 3 cut(s) 45, 83, 103
Kzo9I GATC 3 cut(s) 174, 434, 744
LguI GCTCTTC 1 cut(s) 545
LmnI GCTCC 2 cut(s) 58, 209
LpnPI CCDG 6 cut(s) 75, 120, 456, 546, 604, 733
Lsp1109I GCAGC 9 cut(s) 97, 140, 143, 152, 159, 510, 531, 676, 679
MaeI CTAG 3 cut(s) 486, 512, 708
MaeII ACGT 4 cut(s) 339, 423, 525, 533
MaeIII GTNAC 4 cut(s) 268, 340, 428, 664
MalI GATC 3 cut(s) 176, 436, 746
MbiI CCGCTC 2 cut(s) 53, 347
MboI GATC 3 cut(s) 174, 434, 744
MboII GAAGA 7 cut(s) 193, 364, 472, 475, 562, 631, 665
MflI RGATCY 2 cut(s) 434, 744
MluCI AATT 1 cut(s) 636
MlyI GAGTC 4 cut(s) 21, 466, 616, 747
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 1 cut(s) 660
MspA1I CMGCKG 2 cut(s) 153, 501
MspI CCGG 1 cut(s) 443
MvnI CGCG 2 cut(s) 47, 103
NdeI CATATG 1 cut(s) 215
NdeII GATC 3 cut(s) 174, 434, 744
NlaIV GGNNCC 3 cut(s) 211, 353, 436
NmeAIII GCCGAG 1 cut(s) 568
NmuCI GTSAC 3 cut(s) 268, 340, 428
NotI GCGGCCGC 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 545
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 420
PdmI GAANNNNTTC 1 cut(s) 608
PflFI GACNNNGTC 1 cut(s) 11
PleI GAGTC 4 cut(s) 20, 466, 616, 746
PpsI GAGTC 4 cut(s) 20, 466, 616, 746
PspFI CCCAGC 2 cut(s) 61, 560
PspN4I GGNNCC 3 cut(s) 211, 353, 436
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 2 cut(s) 434, 744
PsyI GACNNNGTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 545
SaqAI TTAA 1 cut(s) 660
Sau3AI GATC 3 cut(s) 174, 434, 744
SchI GAGTC 4 cut(s) 21, 466, 616, 747
SfcI CTRYAG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 636
SspMI CTAG 3 cut(s) 486, 512, 708
TaaI ACNGT 1 cut(s) 760
TaiI ACGT 4 cut(s) 342, 426, 528, 536
TaqI TCGA 3 cut(s) 330, 420, 704
TasI AATT 1 cut(s) 636
TauI GCSGC 5 cut(s) 50, 53, 141, 153, 504
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 3 cut(s) 268, 340, 428
TseI GCWGC 9 cut(s) 85, 147, 153, 156, 165, 498, 519, 689, 692
Tsp45I GTSAC 3 cut(s) 268, 340, 428
TspDTI ATGAA 3 cut(s) 193, 563, 635
TspGWI ACGGA 2 cut(s) 256, 447
TspRI CASTG 1 cut(s) 576
Tth111I GACNNNGTC 1 cut(s) 11
XagI CCTNNNNNAGG 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 3 cut(s) 486, 512, 708
ZraI GACGTC 2 cut(s) 424, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.