Rroxscaffold_2G00101970

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016539
Physical Location & Seq
Reverse (-)
23943613 .. 23944380
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101970.1

Sequence Viewer

Length: 768 bp
ATGACAGACAGAGTCTACCCATCTGCCAAGCCCGCCACCAACGGCGCGGCCGCCCCAACCCACCCAGCCTTCCCAGCGACGAAAGCGCAGCTCTACAGCAACGCGCGCCCTGCCTACCGCCCTCAACCCCACCGCCACCGCCGTAGCCGCAGCCGCTGCTGCTCTTGCTGCCTCTGGATCATTTTCCTTCTCATCCTCCAAATCTTCATTGGAGCCATATGCGGCGCTGTTTTCTACCTCATATACAAGCCCCAACGGCCGACCTTCTCCGTCACTTCCCTCAAGCTCTCCACCTTCAACATCACCTCCTCCAACCAGCTCACCTCCCGTTTTGACATCAACGTCACCGGCCGGAACCCCAACAAGAAACTCGTCTTCTTCTACAACCCCATCGCCATTTCCATCCTCGCAAAAGACGATATAGACGTCGGTGACGGATCCATACCGGCTTTCGCTCACGGAAAGAAGAACACGACTCTCCTGAAGGCTAGGATTACAAGCAGCGGCAAACCACTTGAGAGCAGTGACGTCACCACGTTGAAGGCTGAGATGAAGAGCAAGGCTGGGTTGGGACTGAAGGTGATGCTTGACACCAAAGTGAGAGTGAAGGTTTTCGGGGTGAAGACTCCGAAAATCGGAATTAGGGTTCATTGCGAGGGGATTAAGATTACTTCTCTTCCTACTGCGAAAGTTGCTGCGAAGGCTTCGACTAGCGATGCCAAGTGCAAGGTTGATGTTAGAGTCAAGATCTGGAAATGGACTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

255

Amino Acids

28.01

Weight (kDa)

10.23

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 115 - 218 9.7e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17620
fragaria_vesca FvH4_6g33440
malus_domestica MD09G1193000.v1.1
prunus_persica Prupe.3G049400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0143331
rosa_laevigata RLG00000020027
rosa_multiflora Rmu_sc0003507.1_g000008
rosa_roxburghii Rroxscaffold_2G00101970
rosa_rugosa Rorug02G0380600
rosa_samantha Rh2AG433400 Rh2BG441500 Rh2CG419200 Rh2DG451600
rosa_wichuraiana Rw2G035340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AatII GACGTC 2 cut(s) 429, 531
AccI GTMKAC 1 cut(s) 15
AccII CGCG 3 cut(s) 47, 104, 106
AclWI GGATC 3 cut(s) 185, 432, 445
AcoI YGGCCR 3 cut(s) 48, 257, 349
AcuI CTGAAG 2 cut(s) 503, 596
AcyI GRCGYC 2 cut(s) 426, 528
AfiI CCNNNNNNNGG 1 cut(s) 635
AgsI TTSAA 2 cut(s) 298, 541
AleI CACNNNNGTG 1 cut(s) 596
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
AluBI AGCT 3 cut(s) 91, 286, 319
AluI AGCT 3 cut(s) 91, 286, 319
AlwI GGATC 3 cut(s) 185, 432, 445
AlwNI CAGNNNCTG 1 cut(s) 156
AoxI GGCC 3 cut(s) 48, 257, 349
ApeKI GCWGC 7 cut(s) 88, 150, 156, 159, 168, 501, 695
Asp700I GAANNNNTTC 1 cut(s) 611
AspLEI GCGC 5 cut(s) 47, 88, 106, 108, 227
AsuHPI GGTGA 7 cut(s) 295, 313, 337, 443, 523, 592, 631
BamHI GGATCC 1 cut(s) 437
BbsI GAAGAC 2 cut(s) 367, 629
BbvI GCAGC 7 cut(s) 100, 143, 146, 155, 162, 513, 682
BccI CCATC 3 cut(s) 28, 398, 410
BceAI ACGGC 3 cut(s) 58, 126, 272
BfaI CTAG 2 cut(s) 489, 711
BfmI CTRYAG 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 256
BglII AGATCT 1 cut(s) 747
BmiI GGNNCC 3 cut(s) 214, 356, 439
BmsI GCATC 2 cut(s) 573, 706
BpiI GAAGAC 2 cut(s) 367, 629
BpuEI CTTGAG 2 cut(s) 266, 536
BsaHI GRCGYC 2 cut(s) 426, 528
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse118I RCCGGY 2 cut(s) 347, 445
Bse3DI GCAATG 1 cut(s) 649
BseGI GGATG 2 cut(s) 192, 402
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 537
BsePI GCGCGC 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 298
BseX3I CGGCCG 3 cut(s) 48, 257, 349
BseXI GCAGC 7 cut(s) 100, 143, 146, 155, 162, 513, 682
BseYI CCCAGC 3 cut(s) 64, 73, 563
Bsh1236I CGCG 3 cut(s) 47, 104, 106
Bsh1285I CGRYCG 3 cut(s) 51, 260, 352
BshFI GGCC 3 cut(s) 50, 259, 351
BsiEI CGRYCG 3 cut(s) 51, 260, 352
BsiSI CCGG 3 cut(s) 348, 352, 446
BslFI GGGAC 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 585
BsnI GGCC 3 cut(s) 50, 259, 351
Bsp143I GATC 3 cut(s) 177, 437, 747
BspANI GGCC 3 cut(s) 50, 259, 351
BspCNI CTCAG 1 cut(s) 538
BspFNI CGCG 3 cut(s) 47, 104, 106
BspLI GGNNCC 3 cut(s) 214, 356, 439
BspPI GGATC 3 cut(s) 185, 432, 445
BspQI GCTCTTC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 649
BsrFI RCCGGY 2 cut(s) 347, 445
BssAI RCCGGY 2 cut(s) 347, 445
BssHII GCGCGC 1 cut(s) 104
BssMI GATC 3 cut(s) 177, 437, 747
BssNI GRCGYC 2 cut(s) 426, 528
Bst4CI ACNGT 1 cut(s) 763
Bst6I CTCTTC 2 cut(s) 548, 681
BstACI GRCGYC 2 cut(s) 426, 528
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 33, 106
BstDEI CTNAG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 192, 402
BstFNI CGCG 3 cut(s) 47, 104, 106
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 5 cut(s) 47, 88, 106, 108, 227
BstKTI GATC 3 cut(s) 180, 440, 750
BstMBI GATC 3 cut(s) 177, 437, 747
BstMCI CGRYCG 3 cut(s) 51, 260, 352
BstSFI CTRYAG 1 cut(s) 94
BstUI CGCG 3 cut(s) 47, 104, 106
BstV1I GCAGC 7 cut(s) 100, 143, 146, 155, 162, 513, 682
BstV2I GAAGAC 2 cut(s) 367, 629
BstX2I RGATCY 2 cut(s) 437, 747
BstYI RGATCY 2 cut(s) 437, 747
BstZI CGGCCG 3 cut(s) 48, 257, 349
BsuRI GGCC 3 cut(s) 50, 259, 351
BtgZI GCGATG 2 cut(s) 376, 729
BtsCI GGATG 2 cut(s) 192, 402
BtsI GCAGTG 1 cut(s) 529
BtsIMutI CAGTG 1 cut(s) 529
Cac8I GCNNGC 2 cut(s) 33, 106
CaiI CAGNNNCTG 1 cut(s) 156
CciNI GCGGCCGC 1 cut(s) 48
CfoI GCGC 5 cut(s) 47, 88, 106, 108, 227
Cfr10I RCCGGY 2 cut(s) 347, 445
DdeI CTNAG 1 cut(s) 546
DpnI GATC 3 cut(s) 179, 439, 749
DpnII GATC 3 cut(s) 177, 437, 747
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 3 cut(s) 48, 257, 349
EagI CGGCCG 3 cut(s) 48, 257, 349
Eam1104I CTCTTC 2 cut(s) 548, 681
EarI CTCTTC 2 cut(s) 548, 681
EclXI CGGCCG 3 cut(s) 48, 257, 349
Eco52I CGGCCG 3 cut(s) 48, 257, 349
Eco57I CTGAAG 2 cut(s) 503, 596
FaiI YATR 7 cut(s) 218, 220, 242, 244, 422, 443, 766
FaqI GGGAC 1 cut(s) 585
FauI CCCGC 1 cut(s) 40
FauNDI CATATG 1 cut(s) 218
FblI GTMKAC 1 cut(s) 15
FokI GGATG 2 cut(s) 179, 389
FspBI CTAG 2 cut(s) 489, 711
GlaI GCGC 5 cut(s) 46, 87, 105, 107, 226
GsaI CCCAGC 3 cut(s) 68, 77, 567
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 3 cut(s) 50, 259, 351
HapII CCGG 3 cut(s) 348, 352, 446
HhaI GCGC 5 cut(s) 47, 88, 106, 108, 227
Hin1I GRCGYC 2 cut(s) 426, 528
Hin6I GCGC 5 cut(s) 45, 86, 104, 106, 225
HinP1I GCGC 5 cut(s) 45, 86, 104, 106, 225
HinfI GANTC 4 cut(s) 12, 475, 625, 741
HpaII CCGG 3 cut(s) 348, 352, 446
HphI GGTGA 7 cut(s) 295, 313, 337, 443, 523, 592, 631
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 630, 638
Hpy188III TCNNGA 4 cut(s) 175, 481, 745, 751
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 2 cut(s) 82, 431
HpyAV CCTTC 9 cut(s) 79, 197, 274, 304, 478, 535, 571, 601, 694
HpyCH4III ACNGT 1 cut(s) 763
HpyCH4IV ACGT 4 cut(s) 342, 426, 528, 536
HpyCH4V TGCA 1 cut(s) 726
HpyF3I CTNAG 1 cut(s) 546
HpySE526I ACGT 4 cut(s) 342, 426, 528, 536
Hsp92I GRCGYC 2 cut(s) 426, 528
HspAI GCGC 5 cut(s) 45, 86, 104, 106, 225
Kzo9I GATC 3 cut(s) 177, 437, 747
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 7 cut(s) 100, 143, 146, 155, 162, 513, 682
LweI GCATC 2 cut(s) 573, 706
MaeI CTAG 2 cut(s) 489, 711
MaeII ACGT 4 cut(s) 342, 426, 528, 536
MaeIII GTNAC 5 cut(s) 271, 343, 431, 524, 529
MalI GATC 3 cut(s) 179, 439, 749
MboI GATC 3 cut(s) 177, 437, 747
MboII GAAGA 7 cut(s) 196, 367, 370, 478, 565, 634, 668
MflI RGATCY 2 cut(s) 437, 747
MluCI AATT 1 cut(s) 639
MlyI GAGTC 4 cut(s) 21, 469, 619, 750
MmeI TCCRAC 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 2 cut(s) 156, 504
MspI CCGG 3 cut(s) 348, 352, 446
MvnI CGCG 3 cut(s) 47, 104, 106
NdeI CATATG 1 cut(s) 218
NdeII GATC 3 cut(s) 177, 437, 747
NlaIV GGNNCC 3 cut(s) 214, 356, 439
NmuCI GTSAC 5 cut(s) 271, 343, 431, 524, 529
NotI GCGGCCGC 1 cut(s) 48
OliI CACNNNNGTG 1 cut(s) 596
PauI GCGCGC 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 2 cut(s) 414, 423
PdmI GAANNNNTTC 1 cut(s) 611
PflFI GACNNNGTC 1 cut(s) 11
PleI GAGTC 4 cut(s) 20, 469, 619, 749
PpsI GAGTC 4 cut(s) 20, 469, 619, 749
PspFI CCCAGC 3 cut(s) 64, 73, 563
PspN4I GGNNCC 3 cut(s) 214, 356, 439
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 2 cut(s) 437, 747
PsyI GACNNNGTC 1 cut(s) 11
PteI GCGCGC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 548
SaqAI TTAA 1 cut(s) 663
Sau3AI GATC 3 cut(s) 177, 437, 747
SchI GAGTC 4 cut(s) 21, 469, 619, 750
SfaNI GCATC 2 cut(s) 573, 706
SfcI CTRYAG 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 2 cut(s) 281, 515
SmoI CTYRAG 2 cut(s) 281, 515
Sse9I AATT 1 cut(s) 639
SspMI CTAG 2 cut(s) 489, 711
TaaI ACNGT 1 cut(s) 763
TaiI ACGT 4 cut(s) 345, 429, 531, 539
TaqI TCGA 1 cut(s) 707
TasI AATT 1 cut(s) 639
TauI GCSGC 6 cut(s) 50, 53, 150, 156, 225, 507
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 5 cut(s) 271, 343, 431, 524, 529
TseI GCWGC 7 cut(s) 88, 150, 156, 159, 168, 501, 695
Tsp45I GTSAC 5 cut(s) 271, 343, 431, 524, 529
TspDTI ATGAA 3 cut(s) 196, 566, 638
TspGWI ACGGA 3 cut(s) 259, 450, 474
TspRI CASTG 1 cut(s) 529
Tth111I GACNNNGTC 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 2 cut(s) 489, 711
ZraI GACGTC 2 cut(s) 427, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.