Rh2CG419200

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016539
Physical Location & Seq
Forward (+)
57327158 .. 57329858
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG419200.1

Sequence Viewer

Length: 993 bp
ATGTTGCTGTCTCCCTCCCTTTGCCAATTGCCATTTCACCTTATACTTATTCCACCCTTTACATCACCTCCACACCTTTCTCTCTTTCTCTATAACACAAAATACTTGGTCTCTCTCTCTCTCTTTCTGAGCCAAGACAGCTTTATCTACTCTCTAATTCCTCATTTTCTCTCCCACAAAAATATCAAACACCCTTTCAATTCTTTCTTTCTTAGCGCTCACTCCACCATGACAGACAGAGTCTACCCATCTGCCAAGCCCGCTACCAACGGCGTGGCCGCCCCAAACCCAGCCTTCCCCGCCACGAAAGCGCAGCTCTACAGCAACGCTCGCCCTGCCTACCGCCCTCAACCCCACCGCCACCGCCGCAGCCGCAGCCGCTGCTGCTCTTGCTGCCTCTGGATCATTTTCCTTCTCATCCTCCAAATCTTCATTGGAGCCATATGCGGCGCTGTTTTCTACCTCATATACAAGCCCCAACGCCCGACCTTCTCCGTCACCTCCCTCAAGCTCTCCACCTTCAACATCACCTCCTCCAACCAGCTCACCTCCCGTTTTGACATCAACGTCACCGGCCGGAACCCCAACAAGAAACTCGTCTTCTTCTACAACCCCATCGCCATTTCCATCCTCTCAAAAGACGATATAGACGTCGGTGACGGATCCATACCGGCTTTCACTCACGGAAAGAAGAACACGACTCTCCTGAAGGCTAGGATTACAAGCAGCGGCAAACCACTCGAGAGCAGTGACGTCACCACGTTGAAGGCTGAGATGAAGAGCAAAGCTGGGTTGGGACTGAAGGTGAGGTTGGACACCAAAGTGAGAGTGAAGGTTTTCGGGGTGAAGACTCCAAAAATCGGAATTAGGGTTCATTGCGAAGGGATTAAGGTTACTTCTCTTCCTACTGCGAAAGCTGCTGCGAAGGCTTCGACTAGTAATGCCAAGTGCAAGGTTGATGTTAGAGTCAAGATCTGGAAATGGACTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

330

Amino Acids

36.67

Weight (kDa)

10.2

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 190 - 293 4.5e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17620
fragaria_vesca FvH4_6g33440
malus_domestica MD09G1193000.v1.1
prunus_persica Prupe.3G049400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0143331
rosa_laevigata RLG00000020027
rosa_multiflora Rmu_sc0003507.1_g000008
rosa_roxburghii Rroxscaffold_2G00101970
rosa_rugosa Rorug02G0380600
rosa_samantha Rh2AG433400 Rh2BG441500 Rh2CG419200 Rh2DG451600
rosa_wichuraiana Rw2G035340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 566
AatII GACGTC 2 cut(s) 654, 756
AccI GTMKAC 1 cut(s) 243
AclWI GGATC 3 cut(s) 410, 657, 670
AcoI YGGCCR 2 cut(s) 276, 574
AcuI CTGAAG 2 cut(s) 728, 821
AcyI GRCGYC 2 cut(s) 651, 753
AfeI AGCGCT 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 860
AgsI TTSAA 3 cut(s) 199, 523, 766
AhlI ACTAGT 1 cut(s) 935
AjuI GAANNNNNNNTTGG 4 cut(s) 18, 50, 794, 826
AleI CACNNNNGTG 1 cut(s) 821
AloI GAACNNNNNNTCC 2 cut(s) 855, 887
AluBI AGCT 6 cut(s) 141, 316, 511, 544, 788, 917
AluI AGCT 6 cut(s) 141, 316, 511, 544, 788, 917
Alw26I GTCTC 2 cut(s) 15, 115
AlwI GGATC 3 cut(s) 410, 657, 670
AlwNI CAGNNNCTG 1 cut(s) 381
Ama87I CYCGRG 1 cut(s) 740
Aor51HI AGCGCT 1 cut(s) 217
AoxI GGCC 2 cut(s) 276, 574
ApeKI GCWGC 9 cut(s) 313, 369, 375, 381, 384, 393, 726, 917, 920
Asp700I GAANNNNTTC 1 cut(s) 836
AspLEI GCGC 3 cut(s) 218, 313, 452
AvaI CYCGRG 1 cut(s) 740
BamHI GGATCC 1 cut(s) 662
BbsI GAAGAC 2 cut(s) 592, 854
BbvI GCAGC 9 cut(s) 325, 368, 371, 380, 381, 387, 738, 904, 907
BccI CCATC 3 cut(s) 256, 623, 635
BceAI ACGGC 1 cut(s) 286
BcgI CGANNNNNNTGC 2 cut(s) 721, 755
BcoDI GTCTC 2 cut(s) 15, 115
BcuI ACTAGT 1 cut(s) 935
BfaI CTAG 2 cut(s) 714, 936
BfmI CTRYAG 1 cut(s) 319
BfoI RGCGCY 2 cut(s) 219, 453
BglII AGATCT 1 cut(s) 972
BmeT110I CYCGRG 1 cut(s) 740
BmiI GGNNCC 3 cut(s) 439, 581, 664
BpiI GAAGAC 2 cut(s) 592, 854
BpuEI CTTGAG 1 cut(s) 491
BsaHI GRCGYC 2 cut(s) 651, 753
BsaI GGTCTC 1 cut(s) 115
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 515, 545
Bsc4I CCNNNNNNNGG 1 cut(s) 860
Bse118I RCCGGY 2 cut(s) 572, 670
Bse3DI GCAATG 1 cut(s) 874
BseGI GGATG 2 cut(s) 417, 627
BseLI CCNNNNNNNGG 1 cut(s) 860
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 2 cut(s) 119, 762
BseRI GAGGAG 1 cut(s) 523
BseX3I CGGCCG 1 cut(s) 574
BseXI GCAGC 9 cut(s) 325, 368, 371, 380, 381, 387, 738, 904, 907
BseYI CCCAGC 2 cut(s) 289, 788
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 2 cut(s) 278, 576
BsiEI CGRYCG 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 3 cut(s) 573, 577, 671
BslFI GGGAC 1 cut(s) 810
BslI CCNNNNNNNGG 1 cut(s) 860
BsmAI GTCTC 2 cut(s) 15, 115
BsmFI GGGAC 1 cut(s) 810
BsnI GGCC 2 cut(s) 278, 576
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 740
Bsp143I GATC 3 cut(s) 402, 662, 972
BspANI GGCC 2 cut(s) 278, 576
BspCNI CTCAG 2 cut(s) 120, 763
BspLI GGNNCC 3 cut(s) 439, 581, 664
BspPI GGATC 3 cut(s) 410, 657, 670
BspQI GCTCTTC 1 cut(s) 773
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 874
BsrFI RCCGGY 2 cut(s) 572, 670
BssAI RCCGGY 2 cut(s) 572, 670
BssMI GATC 3 cut(s) 402, 662, 972
BssNI GRCGYC 2 cut(s) 651, 753
Bst4CI ACNGT 1 cut(s) 988
Bst6I CTCTTC 2 cut(s) 773, 906
BstACI GRCGYC 2 cut(s) 651, 753
BstAPI GCANNNNNTGC 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 261, 331
BstDEI CTNAG 3 cut(s) 128, 212, 771
BstF5I GGATG 2 cut(s) 417, 627
BstH2I RGCGCY 2 cut(s) 219, 453
BstHHI GCGC 3 cut(s) 218, 313, 452
BstKTI GATC 3 cut(s) 405, 665, 975
BstMAI GTCTC 2 cut(s) 15, 115
BstMBI GATC 3 cut(s) 402, 662, 972
BstMCI CGRYCG 1 cut(s) 577
BstSFI CTRYAG 1 cut(s) 319
BstV1I GCAGC 9 cut(s) 325, 368, 371, 380, 381, 387, 738, 904, 907
BstV2I GAAGAC 2 cut(s) 592, 854
BstX2I RGATCY 2 cut(s) 662, 972
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 2 cut(s) 662, 972
BstZI CGGCCG 1 cut(s) 574
BsuRI GGCC 2 cut(s) 278, 576
BtgZI GCGATG 1 cut(s) 601
BtsCI GGATG 2 cut(s) 417, 627
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 1 cut(s) 754
Cac8I GCNNGC 2 cut(s) 261, 331
CaiI CAGNNNCTG 1 cut(s) 381
CfoI GCGC 3 cut(s) 218, 313, 452
Cfr10I RCCGGY 2 cut(s) 572, 670
CviAII CATG 1 cut(s) 229
DdeI CTNAG 3 cut(s) 128, 212, 771
DpnI GATC 3 cut(s) 404, 664, 974
DpnII GATC 3 cut(s) 402, 662, 972
DrdI GACNNNNNNGTC 1 cut(s) 566
DseDI GACNNNNNNGTC 1 cut(s) 566
EaeI YGGCCR 2 cut(s) 276, 574
EagI CGGCCG 1 cut(s) 574
Eam1104I CTCTTC 2 cut(s) 773, 906
EarI CTCTTC 2 cut(s) 773, 906
EclXI CGGCCG 1 cut(s) 574
Eco31I GGTCTC 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 574
Eco57I CTGAAG 2 cut(s) 728, 821
Eco88I CYCGRG 1 cut(s) 740
FaeI CATG 1 cut(s) 232
FaqI GGGAC 1 cut(s) 810
FatI CATG 1 cut(s) 228
FauI CCCGC 2 cut(s) 268, 307
FauNDI CATATG 1 cut(s) 443
FblI GTMKAC 1 cut(s) 243
FokI GGATG 2 cut(s) 404, 614
FspBI CTAG 2 cut(s) 714, 936
GlaI GCGC 3 cut(s) 217, 312, 451
GsaI CCCAGC 2 cut(s) 293, 792
HaeII RGCGCY 2 cut(s) 219, 453
HaeIII GGCC 2 cut(s) 278, 576
HapII CCGG 3 cut(s) 573, 577, 671
HhaI GCGC 3 cut(s) 218, 313, 452
Hin1I GRCGYC 2 cut(s) 651, 753
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 3 cut(s) 216, 311, 450
HinP1I GCGC 3 cut(s) 216, 311, 450
HinfI GANTC 4 cut(s) 240, 700, 850, 966
HpaII CCGG 3 cut(s) 573, 577, 671
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 129, 863
Hpy188III TCNNGA 5 cut(s) 400, 706, 742, 970, 976
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 1 cut(s) 656
HpyCH4III ACNGT 1 cut(s) 988
HpyCH4IV ACGT 4 cut(s) 567, 651, 753, 761
HpyCH4V TGCA 1 cut(s) 951
HpyF3I CTNAG 3 cut(s) 128, 212, 771
HpySE526I ACGT 4 cut(s) 567, 651, 753, 761
Hsp92I GRCGYC 2 cut(s) 651, 753
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 3 cut(s) 216, 311, 450
Kzo9I GATC 3 cut(s) 402, 662, 972
LguI GCTCTTC 1 cut(s) 773
LmnI GCTCC 1 cut(s) 437
Lsp1109I GCAGC 9 cut(s) 325, 368, 371, 380, 381, 387, 738, 904, 907
MaeI CTAG 2 cut(s) 714, 936
MaeII ACGT 4 cut(s) 567, 651, 753, 761
MaeIII GTNAC 6 cut(s) 496, 568, 656, 749, 754, 892
MalI GATC 3 cut(s) 404, 664, 974
MboI GATC 3 cut(s) 402, 662, 972
MboII GAAGA 7 cut(s) 421, 592, 595, 703, 790, 859, 893
MfeI CAATTG 1 cut(s) 26
MflI RGATCY 2 cut(s) 662, 972
MluCI AATT 4 cut(s) 26, 156, 199, 864
MlyI GAGTC 4 cut(s) 249, 694, 844, 975
MmeI TCCRAC 2 cut(s) 561, 792
MroXI GAANNNNTTC 1 cut(s) 836
MseI TTAA 1 cut(s) 888
MslI CAYNNNNRTG 1 cut(s) 821
MspA1I CMGCKG 2 cut(s) 381, 729
MspI CCGG 3 cut(s) 573, 577, 671
MunI CAATTG 1 cut(s) 26
NdeI CATATG 1 cut(s) 443
NdeII GATC 3 cut(s) 402, 662, 972
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 3 cut(s) 439, 581, 664
NmuCI GTSAC 5 cut(s) 496, 568, 656, 749, 754
OliI CACNNNNGTG 1 cut(s) 821
PaeR7I CTCGAG 1 cut(s) 740
PciSI GCTCTTC 1 cut(s) 773
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PdmI GAANNNNTTC 1 cut(s) 836
PflFI GACNNNGTC 1 cut(s) 239
PleI GAGTC 4 cut(s) 248, 694, 844, 974
PpsI GAGTC 4 cut(s) 248, 694, 844, 974
PspFI CCCAGC 2 cut(s) 289, 788
PspN4I GGNNCC 3 cut(s) 439, 581, 664
PstNI CAGNNNCTG 1 cut(s) 381
PsuI RGATCY 2 cut(s) 662, 972
PsyI GACNNNGTC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 821
SapI GCTCTTC 1 cut(s) 773
SaqAI TTAA 1 cut(s) 888
Sau3AI GATC 3 cut(s) 402, 662, 972
SchI GAGTC 4 cut(s) 249, 694, 844, 975
SfcI CTRYAG 1 cut(s) 319
Sfr274I CTCGAG 1 cut(s) 740
SlaI CTCGAG 1 cut(s) 740
SmiMI CAYNNNNRTG 1 cut(s) 821
SmlI CTYRAG 2 cut(s) 506, 740
SmoI CTYRAG 2 cut(s) 506, 740
SpeI ACTAGT 1 cut(s) 935
Sse9I AATT 4 cut(s) 26, 156, 199, 864
SspMI CTAG 2 cut(s) 714, 936
TaaI ACNGT 1 cut(s) 988
TaiI ACGT 4 cut(s) 570, 654, 756, 764
TaqI TCGA 2 cut(s) 741, 932
TasI AATT 4 cut(s) 26, 156, 199, 864
TauI GCSGC 6 cut(s) 281, 369, 375, 381, 450, 732
Tru1I TTAA 1 cut(s) 888
Tru9I TTAA 1 cut(s) 888
TscAI CASTG 1 cut(s) 754
TseFI GTSAC 5 cut(s) 496, 568, 656, 749, 754
TseI GCWGC 9 cut(s) 313, 369, 375, 381, 384, 393, 726, 917, 920
Tsp45I GTSAC 5 cut(s) 496, 568, 656, 749, 754
TspDTI ATGAA 3 cut(s) 421, 791, 863
TspGWI ACGGA 3 cut(s) 484, 675, 699
TspRI CASTG 1 cut(s) 754
Tth111I GACNNNGTC 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XhoI CTCGAG 1 cut(s) 740
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 836
XspI CTAG 2 cut(s) 714, 936
ZraI GACGTC 2 cut(s) 652, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.