Prupe.3G049400_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016539
Physical Location & Seq
Reverse (-)
3475226 .. 3476990
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G049400.1

Sequence Viewer

Length: 765 bp
ATGGCAGACAGAGTGTATCCTACAGCGAAACCGGCTACTGCGGCCCCCGCCACAGCAGCCAACCCCGCCTTCCCCGCCACTAAGGCCCAACTCTACAGCAACACGCGCCCAGCCTACCGTCCCCAACCCCACCACCGCCGCCGCAGCCGAAGCCGCTGCTGCTCCTGCTGCCTCTGGATCATCTTCCTCATCCTACTCCAGCTCGTCATCGTAGCCGCCCTCAGCGCCGCCTTCTACGTCTTCTACCGCCCCCACCGCCCTTCCTTCTCCGTTACCTCCCTCAAGCTCCAAACCTTAAACTTCACCACCAACTCCCACCTCACCTCCAGCTTCAACCTGAACATCACCGCTCGAAACCCTAACAAGAAACTCGTGTTCATCTACAACCCCATGGCCATCTCCATCTACTCCAACGACGTCGACATCGGCGACGGAATCATACCTTCCTTTGTGCATGGGAAGAAGAACACGACGCTGTTGAAGGCAAAGATCGCGAGCAGCGGGAAAGAGCTTCAGAGCAGTGAAGTGAGTGCTTTGAAGGCTGACATTAAGAGCAAAAGTGGGCTGCCATTGAAGGTCCGGTTGGACACTAAAGTGAGAGTGAAGGTGCTTGGGCTGAAGACTCCAAGAATTGGAATTAGGGTTAAGTGTGAGGGGATTAGGGTTACTTCTCTTCCAACTGCTAAAGCTCCTGCCACTGCTTCTACTTCCAACGCTAAGTGTAAGGTTGACGTTAGAGTCAAGATCTGGAAATGGACCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

255

Amino Acids

27.96

Weight (kDa)

10.49

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17620
fragaria_vesca FvH4_6g33440
malus_domestica MD09G1193000.v1.1
prunus_persica Prupe.3G049400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0143331
rosa_laevigata RLG00000020027
rosa_multiflora Rmu_sc0003507.1_g000008
rosa_roxburghii Rroxscaffold_2G00101970
rosa_rugosa Rorug02G0380600
rosa_samantha Rh2AG433400 Rh2BG441500 Rh2CG419200 Rh2DG451600
rosa_wichuraiana Rw2G035340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 737
AatII GACGTC 1 cut(s) 420
AccB7I CCANNNNNTGG 1 cut(s) 632
AccBSI CCGCTC 1 cut(s) 350
AccI GTMKAC 1 cut(s) 420
AccII CGCG 2 cut(s) 106, 494
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 2 cut(s) 497, 638
AcyI GRCGYC 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 632
AgsI TTSAA 4 cut(s) 334, 481, 538, 574
AjuI GAANNNNNNNTTGG 4 cut(s) 53, 85, 566, 598
AleI CACNNNNGTG 1 cut(s) 593
AluBI AGCT 5 cut(s) 202, 286, 330, 511, 689
AluI AGCT 5 cut(s) 202, 286, 330, 511, 689
AlwI GGATC 1 cut(s) 185
AoxI GGCC 3 cut(s) 42, 84, 393
ApeKI GCWGC 7 cut(s) 56, 144, 156, 159, 168, 498, 565
AspLEI GCGC 2 cut(s) 108, 227
AspS9I GGNCC 4 cut(s) 43, 85, 577, 756
AsuHPI GGTGA 3 cut(s) 295, 313, 337
AvaII GGWCC 2 cut(s) 577, 756
BalI TGGCCA 1 cut(s) 395
BauI CACGAG 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 232, 626
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 7 cut(s) 68, 143, 146, 155, 156, 510, 552
BccI CCATC 2 cut(s) 404, 410
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BciVI GTATCC 1 cut(s) 27
BfmI CTRYAG 2 cut(s) 21, 94
BfoI RGCGCY 1 cut(s) 228
BfuI GTATCC 1 cut(s) 27
BglI GCCNNNNNGGC 1 cut(s) 83
BglII AGATCT 1 cut(s) 744
Bme18I GGWCC 2 cut(s) 577, 756
BmgT120I GGNCC 4 cut(s) 43, 85, 577, 756
BmiI GGNNCC 1 cut(s) 45
BpiI GAAGAC 2 cut(s) 232, 626
BpmI CTGGAG 2 cut(s) 182, 310
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 579
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse118I RCCGGY 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMII CTCAG 1 cut(s) 235
BseXI GCAGC 7 cut(s) 68, 143, 146, 155, 156, 510, 552
BseYI CCCAGC 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 106, 494
BshFI GGCC 3 cut(s) 44, 86, 395
BsiSI CCGG 2 cut(s) 32, 580
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 3 cut(s) 44, 86, 395
Bsp143I GATC 3 cut(s) 177, 489, 744
Bsp19I CCATGG 1 cut(s) 390
Bsp68I TCGCGA 1 cut(s) 494
BspANI GGCC 3 cut(s) 44, 86, 395
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 2 cut(s) 106, 494
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 3 cut(s) 177, 489, 744
BssNI GRCGYC 1 cut(s) 417
BssSI CACGAG 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 119, 760
Bst6I CTCTTC 1 cut(s) 678
BstACI GRCGYC 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 496
BstDEI CTNAG 3 cut(s) 81, 221, 717
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 2 cut(s) 106, 494
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 108, 227
BstKTI GATC 3 cut(s) 180, 492, 747
BstMBI GATC 3 cut(s) 177, 489, 744
BstSFI CTRYAG 2 cut(s) 21, 94
BstUI CGCG 2 cut(s) 106, 494
BstV1I GCAGC 7 cut(s) 68, 143, 146, 155, 156, 510, 552
BstV2I GAAGAC 2 cut(s) 232, 626
BstX2I RGATCY 1 cut(s) 744
BstYI RGATCY 1 cut(s) 744
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 3 cut(s) 44, 86, 395
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 2 cut(s) 526, 696
BtsIMutI CAGTG 2 cut(s) 526, 696
BtuMI TCGCGA 1 cut(s) 494
Cac8I GCNNGC 1 cut(s) 496
CfoI GCGC 2 cut(s) 108, 227
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 4 cut(s) 43, 85, 577, 756
CseI GACGC 1 cut(s) 481
CviAII CATG 2 cut(s) 391, 455
DdeI CTNAG 3 cut(s) 81, 221, 717
DpnI GATC 3 cut(s) 179, 491, 746
DpnII GATC 3 cut(s) 177, 489, 744
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 577, 756
Eco57I CTGAAG 2 cut(s) 497, 638
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 2 cut(s) 394, 458
FaiI YATR 3 cut(s) 392, 440, 456
FaqI GGGAC 1 cut(s) 105
FatI CATG 2 cut(s) 390, 454
FauI CCCGC 4 cut(s) 55, 73, 82, 494
FblI GTMKAC 1 cut(s) 420
FokI GGATG 1 cut(s) 176
GlaI GCGC 2 cut(s) 107, 226
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 2 cut(s) 182, 310
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 3 cut(s) 44, 86, 395
HapII CCGG 2 cut(s) 32, 580
HgaI GACGC 1 cut(s) 481
HhaI GCGC 2 cut(s) 108, 227
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 2 cut(s) 394, 458
Hin6I GCGC 2 cut(s) 106, 225
HinP1I GCGC 2 cut(s) 106, 225
HincII GTYRAC 2 cut(s) 421, 730
HindII GTYRAC 2 cut(s) 421, 730
HinfI GANTC 3 cut(s) 435, 622, 738
HpaII CCGG 2 cut(s) 32, 580
HphI GGTGA 3 cut(s) 295, 313, 337
Hpy166II GTNNAC 2 cut(s) 421, 730
Hpy188I TCNGA 1 cut(s) 516
Hpy188III TCNNGA 4 cut(s) 175, 493, 742, 748
Hpy8I GTNNAC 2 cut(s) 421, 730
Hpy99I CGWCG 4 cut(s) 419, 422, 434, 475
HpyAV CCTTC 9 cut(s) 79, 241, 270, 274, 453, 475, 532, 568, 598
HpyCH4III ACNGT 2 cut(s) 119, 760
HpyCH4IV ACGT 3 cut(s) 237, 417, 732
HpyCH4V TGCA 1 cut(s) 454
HpyF3I CTNAG 3 cut(s) 81, 221, 717
HpySE526I ACGT 3 cut(s) 237, 417, 732
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 2 cut(s) 394, 458
HspAI GCGC 2 cut(s) 106, 225
Kzo9I GATC 3 cut(s) 177, 489, 744
LmnI GCTCC 3 cut(s) 167, 291, 694
Lsp1109I GCAGC 7 cut(s) 68, 143, 146, 155, 156, 510, 552
MaeII ACGT 3 cut(s) 237, 417, 732
MaeIII GTNAC 2 cut(s) 271, 664
MalI GATC 3 cut(s) 179, 491, 746
MbiI CCGCTC 1 cut(s) 350
MboI GATC 3 cut(s) 177, 489, 744
MboII GAAGA 6 cut(s) 175, 232, 472, 475, 631, 665
MflI RGATCY 1 cut(s) 744
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 2 cut(s) 630, 636
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 616, 747
MmeI TCCRAC 4 cut(s) 435, 564, 701, 735
MnlI CCTC 8 cut(s) 182, 197, 230, 286, 290, 329, 334, 646
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 3 cut(s) 296, 549, 645
MslI CAYNNNNRTG 1 cut(s) 593
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 2 cut(s) 156, 501
MspI CCGG 2 cut(s) 32, 580
MvnI CGCG 2 cut(s) 106, 494
NcoI CCATGG 1 cut(s) 390
NdeII GATC 3 cut(s) 177, 489, 744
NlaIII CATG 2 cut(s) 394, 458
NlaIV GGNNCC 1 cut(s) 45
NruI TCGCGA 1 cut(s) 494
OliI CACNNNNGTG 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PfeI GAWTC 1 cut(s) 435
PflMI CCANNNNNTGG 1 cut(s) 632
PleI GAGTC 2 cut(s) 616, 746
PpsI GAGTC 2 cut(s) 616, 746
PspFI CCCAGC 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 4 cut(s) 43, 85, 577, 756
PsuI RGATCY 1 cut(s) 744
RruI TCGCGA 1 cut(s) 494
RseI CAYNNNNRTG 1 cut(s) 593
SalI GTCGAC 1 cut(s) 419
SaqAI TTAA 3 cut(s) 296, 549, 645
Sau3AI GATC 3 cut(s) 177, 489, 744
Sau96I GGNCC 4 cut(s) 43, 85, 577, 756
SchI GAGTC 2 cut(s) 616, 747
SfcI CTRYAG 2 cut(s) 21, 94
SinI GGWCC 2 cut(s) 577, 756
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 630, 636
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 119, 760
TaiI ACGT 3 cut(s) 240, 420, 735
TaqI TCGA 2 cut(s) 352, 420
TasI AATT 2 cut(s) 630, 636
TauI GCSGC 6 cut(s) 44, 141, 144, 156, 218, 230
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 3 cut(s) 296, 549, 645
Tru9I TTAA 3 cut(s) 296, 549, 645
TscAI CASTG 2 cut(s) 526, 703
TseI GCWGC 7 cut(s) 56, 144, 156, 159, 168, 498, 565
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 2 cut(s) 259, 447
TspRI CASTG 2 cut(s) 526, 703
Van91I CCANNNNNTGG 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 577, 756
XmiI GTMKAC 1 cut(s) 420
ZraI GACGTC 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.