AT1G17700

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013966
Physical Location & Seq
Forward (+)
6089460 .. 6090339
880 bp
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UTR
Exon/CDS
Intron
AT1G17700.1

Sequence Viewer

Length: 543 bp
ATGACAACATATGGCACCAATCAGAAGTCGTCTAACGACTTAGCCCCCAAGCTGGAGTACATCACCCGTGGCATCAACCAACACAAAAGATCCGGCCTCGCCACGCGCCGCCCTTGGAAGCAAATGCTAGACCTCGGTTCCTTCAACTTCCCCCGCAAACTAGCCACCGTGATCACTAGAATCAGAGCCAACACGGTCTATTTCCAGACCAATTACACCATTGTCGTCCTCTTCTCCGTATTTCTCAGCCTGATTTGGAATCCCTTCTCCCTCTTAGTTCTACTCGCCCTACTCGGTGCATGGCTCTTCCTCTACTTCCTCCGTGATGAACCGCTCACTGTTTTTGACCGCGAGATTGACCACCGTATCGTACTTATAATCATGTCTGTTATCACTCTTTCCATCCTTTTTTTAACTGATGCGAAGCTCAATATCGCGGTGGCCATCGTGGCAGGTGCCTTGGCTGTGTTGTCTCATGCAGCTGTTAGGAAAACTGAAGATCTTTTCCAAACCGACGAAGAAACCAGTCTTTTAAATCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

180

Amino Acids

20.44

Weight (kDa)

9.52

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 32 - 172 4.8e-48 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013966)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17700
fragaria_vesca FvH4_1g19140 FvH4_6g04220 FvH4_6g33130
malus_domestica MD14G1066400.v1.1 MD17G1045700.v1.1 MD17G1175300.v1.1
prunus_persica Prupe.3G051300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0142821
rosa_laevigata RLG00000019988
rosa_multiflora Rmu_sc0002358.1_g000017
rosa_roxburghii Rroxscaffold_2G00102290 Rroxscaffold_2G00103340
rosa_rugosa Rorug02G0375500
rosa_samantha Rh2AG428600 Rh2CG414200
rosa_wichuraiana Rw2G035050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AarI CACCTGC 1 cut(s) 443
Acc36I ACCTGC 1 cut(s) 443
AccB1I GGYRCC 2 cut(s) 14, 455
AccBSI CCGCTC 1 cut(s) 334
AccII CGCG 3 cut(s) 106, 351, 437
AciI CCGC 5 cut(s) 109, 154, 332, 349, 437
AclWI GGATC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 2 cut(s) 59, 372
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 3 cut(s) 52, 427, 482
AluI AGCT 3 cut(s) 52, 427, 482
Alw26I GTCTC 1 cut(s) 477
AlwI GGATC 1 cut(s) 84
AoxI GGCC 2 cut(s) 94, 441
ApeKI GCWGC 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 55
BaeI ACNNNNGTAYC 2 cut(s) 349, 382
BalI TGGCCA 1 cut(s) 443
BanI GGYRCC 2 cut(s) 14, 455
BbvI GCAGC 1 cut(s) 491
BccI CCATC 2 cut(s) 410, 452
BclI TGATCA 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 477
BfaI CTAG 3 cut(s) 128, 161, 177
BfuAI ACCTGC 1 cut(s) 443
BglI GCCNNNNNGGC 1 cut(s) 449
BglII AGATCT 1 cut(s) 499
BisI GCNGC 2 cut(s) 109, 480
BlsI GCNGC 2 cut(s) 110, 481
BmiI GGNNCC 3 cut(s) 16, 139, 457
BmsI GCATC 2 cut(s) 81, 409
BpmI CTGGAG 1 cut(s) 74
BsaJI CCNNGG 4 cut(s) 67, 113, 133, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 525
BseDI CCNNGG 4 cut(s) 67, 113, 133, 459
BseGI GGATG 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 525
BseXI GCAGC 1 cut(s) 491
Bsh1236I CGCG 3 cut(s) 106, 351, 437
BshFI GGCC 2 cut(s) 96, 443
BshNI GGYRCC 2 cut(s) 14, 455
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 477
BsnI GGCC 2 cut(s) 96, 443
Bsp143I GATC 3 cut(s) 89, 171, 499
BspACI CCGC 5 cut(s) 109, 154, 332, 349, 437
BspANI GGCC 2 cut(s) 96, 443
BspCNI CTCAG 1 cut(s) 258
BspFNI CGCG 3 cut(s) 106, 351, 437
BspLI GGNNCC 3 cut(s) 16, 139, 457
BspMI ACCTGC 1 cut(s) 443
BspPI GGATC 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 311
BspT107I GGYRCC 2 cut(s) 14, 455
BsrBI CCGCTC 1 cut(s) 334
BsrI ACTGG 1 cut(s) 525
BssECI CCNNGG 4 cut(s) 67, 113, 133, 459
BssMI GATC 3 cut(s) 89, 171, 499
BssT1I CCWWGG 2 cut(s) 113, 459
Bst4CI ACNGT 4 cut(s) 169, 196, 340, 365
Bst6I CTCTTC 2 cut(s) 236, 311
BstDEI CTNAG 3 cut(s) 40, 245, 274
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 402
BstFNI CGCG 3 cut(s) 106, 351, 437
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 3 cut(s) 92, 174, 502
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 3 cut(s) 89, 171, 499
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstUI CGCG 3 cut(s) 106, 351, 437
BstV1I GCAGC 1 cut(s) 491
BstX2I RGATCY 2 cut(s) 89, 499
BstYI RGATCY 2 cut(s) 89, 499
BsuRI GGCC 2 cut(s) 96, 443
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 336
BveI ACCTGC 1 cut(s) 443
CfoI GCGC 1 cut(s) 108
Csp6I GTAC 2 cut(s) 58, 371
CviAII CATG 3 cut(s) 300, 382, 476
CviQI GTAC 2 cut(s) 58, 371
DdeI CTNAG 3 cut(s) 40, 245, 274
DpnI GATC 3 cut(s) 91, 173, 501
DpnII GATC 3 cut(s) 89, 171, 499
DraI TTTAAA 1 cut(s) 534
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 236, 311
EarI CTCTTC 2 cut(s) 236, 311
Eco130I CCWWGG 2 cut(s) 113, 459
Eco57I CTGAAG 1 cut(s) 516
EcoT14I CCWWGG 2 cut(s) 113, 459
ErhI CCWWGG 2 cut(s) 113, 459
FaeI CATG 3 cut(s) 303, 385, 479
FaiI YATR 6 cut(s) 10, 12, 301, 377, 383, 477
FatI CATG 3 cut(s) 299, 381, 475
FauI CCCGC 1 cut(s) 161
FauNDI CATATG 1 cut(s) 10
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 109, 480
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 109, 480
FspBI CTAG 3 cut(s) 128, 161, 177
GlaI GCGC 1 cut(s) 107
GluI GCNGC 2 cut(s) 109, 480
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 2 cut(s) 96, 443
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 108
Hin1II CATG 3 cut(s) 303, 385, 479
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 2 cut(s) 180, 259
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 24, 185
Hpy188III TCNNGA 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 2 cut(s) 151, 274
HpyCH4III ACNGT 4 cut(s) 169, 196, 340, 365
HpyCH4V TGCA 2 cut(s) 299, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 3 cut(s) 40, 245, 274
Hsp92II CATG 3 cut(s) 303, 385, 479
HspAI GCGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 3 cut(s) 89, 171, 499
LguI GCTCTTC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 38, 106, 218, 263, 438, 538
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 2 cut(s) 81, 409
MaeI CTAG 3 cut(s) 128, 161, 177
MalI GATC 3 cut(s) 91, 173, 501
MbiI CCGCTC 1 cut(s) 334
MboI GATC 3 cut(s) 89, 171, 499
MboII GAAGA 4 cut(s) 223, 298, 509, 530
MflI RGATCY 2 cut(s) 89, 499
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 1 cut(s) 211
MluNI TGGCCA 1 cut(s) 443
MnlI CCTC 6 cut(s) 107, 143, 239, 281, 320, 329
Mox20I TGGCCA 1 cut(s) 443
MroXI GAANNNNTTC 1 cut(s) 263
MscI TGGCCA 1 cut(s) 443
MseI TTAA 2 cut(s) 413, 533
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 1 cut(s) 93
MvnI CGCG 3 cut(s) 106, 351, 437
MwoI GCNNNNNNNGC 1 cut(s) 449
NdeI CATATG 1 cut(s) 10
NdeII GATC 3 cut(s) 89, 171, 499
NlaIII CATG 3 cut(s) 303, 385, 479
NlaIV GGNNCC 3 cut(s) 16, 139, 457
PaqCI CACCTGC 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 180, 259
PkrI GCNGC 2 cut(s) 110, 481
PsiI TTATAA 1 cut(s) 377
PspN4I GGNNCC 3 cut(s) 16, 139, 457
PsuI RGATCY 2 cut(s) 89, 499
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 2 cut(s) 59, 372
RsaNI GTAC 2 cut(s) 58, 371
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 2 cut(s) 413, 533
SatI GCNGC 2 cut(s) 109, 480
Sau3AI GATC 3 cut(s) 89, 171, 499
SetI ASST 5 cut(s) 54, 135, 429, 457, 484
SfaNI GCATC 2 cut(s) 81, 409
Sse9I AATT 1 cut(s) 211
SsiI CCGC 5 cut(s) 109, 154, 332, 349, 437
SspMI CTAG 3 cut(s) 128, 161, 177
StyI CCWWGG 2 cut(s) 113, 459
TaaI ACNGT 4 cut(s) 169, 196, 340, 365
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 180, 259
Tru1I TTAA 2 cut(s) 413, 533
Tru9I TTAA 2 cut(s) 413, 533
TscAI CASTG 1 cut(s) 343
TseI GCWGC 1 cut(s) 479
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 3 cut(s) 226, 311, 528
TspRI CASTG 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 3 cut(s) 128, 161, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.