Prupe.3G051300_v2.0.a1

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013966
Physical Location & Seq
Forward (+)
3616299 .. 3617397
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G051300.1

Sequence Viewer

Length: 564 bp
ATGACCACCTACGGCACGATCCCGACCTCGTCGTCTACGCAGGGCCCCTCCGGCGAGTACATCTCGCGCGCCAAGGAGCGCATCAAGGCCGGCCTCGGCGCTCGCCGGCCATGGAAGCTCATGTTCAACTTCAGATCCTTCAACTTCCCGTCGCCGTTCCGCGAGGTCTTCGGGCGAATCCGATCGAACGTCGCCTACTTCCGGATGAACTACGCGATCGTGGTGCTGCTGATCCTCTTCCTCAGCCTCCTCTGGCACCCGATCTCGCTCATCGTCTTCATCATCATGATGGCCGCCTGGCTCTTCCTCTACTTCCTCCGCGACGAGCCCCTCGTGCTCTTCGGCAAAACGGTGGACGATCGCGTCGTTTTGATCGTCTTGGCGGTGGTCACGATCGTGCTCTTGTTCTTGACCCACGCGACGGTGAATATTTTGGTGGCGCTGTTGATTGGGGTTGTGTTGGTGGTCGTGCACGCGGGGTTGAGAAAGAAGGATGATTTGCCTGTGGATGAGGAGAACTCTGGCTTGTTGACGACCCCTGCTGCATCTTCTTCATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

188

Amino Acids

20.9

Weight (kDa)

9.91

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013966)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17700
fragaria_vesca FvH4_1g19140 FvH4_6g04220 FvH4_6g33130
malus_domestica MD14G1066400.v1.1 MD17G1045700.v1.1 MD17G1175300.v1.1
prunus_persica Prupe.3G051300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0142821
rosa_laevigata RLG00000019988
rosa_multiflora Rmu_sc0002358.1_g000017
rosa_roxburghii Rroxscaffold_2G00102290 Rroxscaffold_2G00103340
rosa_rugosa Rorug02G0375500
rosa_samantha Rh2AG428600 Rh2CG414200
rosa_wichuraiana Rw2G035050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 31, 362
AccB1I GGYRCC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 35
AccII CGCG 8 cut(s) 67, 69, 162, 215, 321, 363, 419, 476
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 5 cut(s) 160, 294, 319, 383, 476
AclWI GGATC 3 cut(s) 13, 129, 226
AcoI YGGCCR 2 cut(s) 107, 291
AcuI CTGAAG 1 cut(s) 115
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 201, 421
AgsI TTSAA 2 cut(s) 127, 142
AjnI CCWGG 1 cut(s) 296
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 3 cut(s) 339, 402, 474
Alw44I GTGCAC 1 cut(s) 470
AlwI GGATC 3 cut(s) 13, 129, 226
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 5 cut(s) 43, 87, 91, 107, 291
ApaI GGGCCC 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 470
ApeKI GCWGC 2 cut(s) 226, 542
AspLEI GCGC 5 cut(s) 69, 71, 81, 101, 442
AspS9I GGNCC 2 cut(s) 43, 44
AsuHPI GGTGA 1 cut(s) 436
BaeGI GKGCMC 2 cut(s) 47, 474
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 2 cut(s) 47, 330
BauI CACGAG 1 cut(s) 332
BbsI GAAGAC 2 cut(s) 160, 268
Bbv12I GWGCWC 3 cut(s) 339, 402, 474
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 213, 529
BccI CCATC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 28, 139
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 298
BfoI RGCGCY 2 cut(s) 102, 443
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 3 cut(s) 227, 294, 543
BlsI GCNGC 3 cut(s) 228, 295, 544
Bme1390I CCNGG 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 43, 44
BmiI GGNNCC 3 cut(s) 45, 46, 257
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 2 cut(s) 90, 554
BpiI GAAGAC 2 cut(s) 160, 268
BplI GAGNNNNNCTC 4 cut(s) 47, 79, 503, 535
Bpu10I CCTNAGC 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 72, 94, 110
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 421
Bse118I RCCGGY 2 cut(s) 89, 105
BseAI TCCGGA 1 cut(s) 201
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 3 cut(s) 72, 94, 110
BseGI GGATG 3 cut(s) 210, 499, 514
BseLI CCNNNNNNNGG 2 cut(s) 201, 421
BseMII CTCAG 1 cut(s) 256
BsePI GCGCGC 1 cut(s) 67
BseRI GAGGAG 2 cut(s) 239, 527
BseSI GKGCMC 2 cut(s) 47, 474
BseXI GCAGC 2 cut(s) 213, 529
Bsh1236I CGCG 8 cut(s) 67, 69, 162, 215, 321, 363, 419, 476
Bsh1285I CGRYCG 4 cut(s) 185, 219, 361, 396
BshFI GGCC 5 cut(s) 45, 89, 93, 109, 293
BshNI GGYRCC 1 cut(s) 255
BsiEI CGRYCG 4 cut(s) 185, 219, 361, 396
BsiHKAI GWGCWC 3 cut(s) 339, 402, 474
BsiSI CCGG 4 cut(s) 51, 90, 106, 202
BslI CCNNNNNNNGG 2 cut(s) 201, 421
BsnI GGCC 5 cut(s) 45, 89, 93, 109, 293
Bsp120I GGGCCC 1 cut(s) 43
Bsp1286I GDGCHC 5 cut(s) 47, 330, 339, 402, 474
Bsp13I TCCGGA 1 cut(s) 201
Bsp143I GATC 9 cut(s) 18, 134, 182, 216, 231, 261, 358, 372, 393
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 5 cut(s) 160, 294, 319, 383, 476
BspANI GGCC 5 cut(s) 45, 89, 93, 109, 293
BspCNI CTCAG 1 cut(s) 255
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 8 cut(s) 67, 69, 162, 215, 321, 363, 419, 476
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 45, 46, 257
BspPI GGATC 3 cut(s) 13, 129, 226
BspQI GCTCTTC 2 cut(s) 308, 344
BspT107I GGYRCC 1 cut(s) 255
BsrFI RCCGGY 2 cut(s) 89, 105
BssAI RCCGGY 2 cut(s) 89, 105
BssECI CCNNGG 3 cut(s) 72, 94, 110
BssHII GCGCGC 1 cut(s) 67
BssMI GATC 9 cut(s) 18, 134, 182, 216, 231, 261, 358, 372, 393
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 72, 110
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 352, 424
Bst6I CTCTTC 3 cut(s) 242, 308, 344
BstC8I GCNNGC 5 cut(s) 69, 91, 103, 107, 474
BstDEI CTNAG 1 cut(s) 242
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 3 cut(s) 210, 499, 514
BstFNI CGCG 8 cut(s) 67, 69, 162, 215, 321, 363, 419, 476
BstH2I RGCGCY 2 cut(s) 102, 443
BstHHI GCGC 5 cut(s) 69, 71, 81, 101, 442
BstKTI GATC 9 cut(s) 21, 137, 185, 219, 234, 264, 361, 375, 396
BstMBI GATC 9 cut(s) 18, 134, 182, 216, 231, 261, 358, 372, 393
BstMCI CGRYCG 4 cut(s) 185, 219, 361, 396
BstMWI GCNNNNNNNGC 3 cut(s) 51, 115, 334
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 296
BstSLI GKGCMC 2 cut(s) 47, 474
BstUI CGCG 8 cut(s) 67, 69, 162, 215, 321, 363, 419, 476
BstV1I GCAGC 2 cut(s) 213, 529
BstV2I GAAGAC 2 cut(s) 160, 268
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 5 cut(s) 45, 89, 93, 109, 293
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 3 cut(s) 210, 499, 514
Cac8I GCNNGC 5 cut(s) 69, 91, 103, 107, 474
CciI TCATGA 1 cut(s) 285
CfoI GCGC 5 cut(s) 69, 71, 81, 101, 442
Cfr10I RCCGGY 2 cut(s) 89, 105
Cfr13I GGNCC 2 cut(s) 43, 44
CseI GACGC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 58
CviAII CATG 3 cut(s) 111, 121, 286
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 242
DpnI GATC 9 cut(s) 20, 136, 184, 218, 233, 263, 360, 374, 395
DpnII GATC 9 cut(s) 18, 134, 182, 216, 231, 261, 358, 372, 393
DrdI GACNNNNNNGTC 2 cut(s) 31, 362
DseDI GACNNNNNNGTC 2 cut(s) 31, 362
EaeI YGGCCR 2 cut(s) 107, 291
Eam1104I CTCTTC 3 cut(s) 242, 308, 344
EarI CTCTTC 3 cut(s) 242, 308, 344
Eco130I CCWWGG 2 cut(s) 72, 110
Eco24I GRGCYC 2 cut(s) 47, 330
Eco57I CTGAAG 1 cut(s) 115
EcoO109I RGGNCCY 2 cut(s) 43, 44
EcoRII CCWGG 1 cut(s) 296
EcoT14I CCWWGG 2 cut(s) 72, 110
EcoT38I GRGCYC 2 cut(s) 47, 330
ErhI CCWWGG 2 cut(s) 72, 110
FaeI CATG 3 cut(s) 114, 124, 289
FaiI YATR 3 cut(s) 112, 122, 287
FatI CATG 3 cut(s) 110, 120, 285
FauI CCCGC 1 cut(s) 469
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 3 cut(s) 227, 294, 543
FokI GGATG 3 cut(s) 217, 506, 521
FriOI GRGCYC 2 cut(s) 47, 330
FseI GGCCGGCC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 227, 294, 543
GlaI GCGC 5 cut(s) 68, 70, 80, 100, 441
GluI GCNGC 3 cut(s) 227, 294, 543
HaeII RGCGCY 2 cut(s) 102, 443
HaeIII GGCC 5 cut(s) 45, 89, 93, 109, 293
HapII CCGG 4 cut(s) 51, 90, 106, 202
HgaI GACGC 1 cut(s) 352
HhaI GCGC 5 cut(s) 69, 71, 81, 101, 442
Hin1II CATG 3 cut(s) 114, 124, 289
Hin6I GCGC 5 cut(s) 67, 69, 79, 99, 440
HinP1I GCGC 5 cut(s) 67, 69, 79, 99, 440
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HinfI GANTC 1 cut(s) 177
HpaII CCGG 4 cut(s) 51, 90, 106, 202
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 4 cut(s) 36, 355, 472, 531
Hpy188I TCNGA 2 cut(s) 134, 182
Hpy188III TCNNGA 5 cut(s) 22, 202, 286, 391, 409
Hpy8I GTNNAC 4 cut(s) 36, 355, 472, 531
Hpy99I CGWCG 6 cut(s) 34, 154, 194, 326, 368, 424
HpyAV CCTTC 2 cut(s) 148, 484
HpyCH4III ACNGT 2 cut(s) 352, 424
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 472, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 115, 334
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 3 cut(s) 114, 124, 289
HspAI GCGC 5 cut(s) 67, 69, 79, 99, 440
Kpn2I TCCGGA 1 cut(s) 201
KroI GCCGGC 2 cut(s) 89, 105
KroNI GCCGGC 2 cut(s) 91, 107
Kzo9I GATC 9 cut(s) 18, 134, 182, 216, 231, 261, 358, 372, 393
LguI GCTCTTC 2 cut(s) 308, 344
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 2 cut(s) 213, 529
LweI GCATC 2 cut(s) 90, 554
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 388
MalI GATC 9 cut(s) 20, 136, 184, 218, 233, 263, 360, 374, 395
MboI GATC 9 cut(s) 18, 134, 182, 216, 231, 261, 358, 372, 393
MboII GAAGA 7 cut(s) 160, 229, 268, 295, 331, 540, 543
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 5 cut(s) 47, 330, 339, 402, 474
MroI TCCGGA 1 cut(s) 201
MroNI GCCGGC 2 cut(s) 89, 105
MseI TTAA 1 cut(s) 562
MslI CAYNNNNRTG 3 cut(s) 284, 287, 395
MspI CCGG 4 cut(s) 51, 90, 106, 202
MspR9I CCNGG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 8 cut(s) 67, 69, 162, 215, 321, 363, 419, 476
MwoI GCNNNNNNNGC 3 cut(s) 51, 115, 334
NaeI GCCGGC 2 cut(s) 91, 107
NcoI CCATGG 1 cut(s) 110
NdeII GATC 9 cut(s) 18, 134, 182, 216, 231, 261, 358, 372, 393
NgoMIV GCCGGC 2 cut(s) 89, 105
NlaIII CATG 3 cut(s) 114, 124, 289
NlaIV GGNNCC 3 cut(s) 45, 46, 257
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 388
OliI CACNNNNGTG 1 cut(s) 395
PagI TCATGA 1 cut(s) 285
PauI GCGCGC 1 cut(s) 67
PciSI GCTCTTC 2 cut(s) 308, 344
PcsI WCGNNNNNNNCGW 3 cut(s) 330, 363, 372
PdiI GCCGGC 2 cut(s) 91, 107
PfeI GAWTC 1 cut(s) 177
PflFI GACNNNGTC 1 cut(s) 28
PkrI GCNGC 3 cut(s) 228, 295, 544
Ple19I CGATCG 4 cut(s) 185, 219, 361, 396
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 3 cut(s) 45, 46, 257
PspOMI GGGCCC 1 cut(s) 43
PspPI GGNCC 2 cut(s) 43, 44
PsrI GAACNNNNNNTAC 2 cut(s) 179, 211
PsuI RGATCY 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 28
PteI GCGCGC 1 cut(s) 67
PvuI CGATCG 4 cut(s) 185, 219, 361, 396
RigI GGCCGGCC 1 cut(s) 93
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 3 cut(s) 284, 287, 395
SapI GCTCTTC 2 cut(s) 308, 344
SaqAI TTAA 1 cut(s) 562
SatI GCNGC 3 cut(s) 227, 294, 543
Sau3AI GATC 9 cut(s) 18, 134, 182, 216, 231, 261, 358, 372, 393
Sau96I GGNCC 2 cut(s) 43, 44
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 5 cut(s) 47, 330, 339, 402, 474
SetI ASST 5 cut(s) 11, 29, 120, 168, 192
SfaNI GCATC 2 cut(s) 90, 554
SmiMI CAYNNNNRTG 3 cut(s) 284, 287, 395
SsiI CCGC 5 cut(s) 160, 294, 319, 383, 476
SspI AATATT 1 cut(s) 430
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 2 cut(s) 72, 110
TaaI ACNGT 2 cut(s) 352, 424
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 185
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 226, 542
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 3 cut(s) 221, 268, 543
Tth111I GACNNNGTC 1 cut(s) 28
VneI GTGCAC 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.