FvH4_1g19140

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013966
Physical Location & Seq
Reverse (-)
11342469 .. 11343265
797 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19140.t1

Sequence Viewer

Length: 396 bp
ATGTTCGACTTCCGCTCCCTCACCTTCCCCCTCTGCTTCGGCGACGTGCTCACGCGCCTCCGCTACAACGCCGCCTACTTCCGCATGAACTACGCCATCGTCGTCCTCCTGATCCTCTTCCTCAGCCTCCTTTGGCACCCGATCTCGCTCATCGTGATGCTCGCCGCCTGGCTCTTCCTCTACTTCCTCCGAGACGAGCCGCTCGTCCTCTTCGGCAGCACCGTCGTGACGATTGCGCTTCTCTTTCTGACGTCAGGCATGATGAACATCCTGGTGGCTCTGCTGATCGTAGTGGTGGTGGTGGCGGTGCACACGATGCCGAGGAAGACAGAGGATTTGCACGTCGATGAGGAGAACGCTGGATTGATGACCGGCCCAGTCGGATCTTCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

132

Amino Acids

14.73

Weight (kDa)

5.8

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 1 - 118 2.5e-28 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013966)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17700
fragaria_vesca FvH4_1g19140 FvH4_6g04220 FvH4_6g33130
malus_domestica MD14G1066400.v1.1 MD17G1045700.v1.1 MD17G1175300.v1.1
prunus_persica Prupe.3G051300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0142821
rosa_laevigata RLG00000019988
rosa_multiflora Rmu_sc0002358.1_g000017
rosa_roxburghii Rroxscaffold_2G00102290 Rroxscaffold_2G00103340
rosa_rugosa Rorug02G0375500
rosa_samantha Rh2AG428600 Rh2CG414200
rosa_wichuraiana Rw2G035050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 135
AccBSI CCGCTC 2 cut(s) 15, 202
AccII CGCG 1 cut(s) 55
AciI CCGC 7 cut(s) 13, 61, 72, 82, 165, 200, 305
AclWI GGATC 2 cut(s) 106, 391
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 251
AjiI CACGTC 2 cut(s) 46, 343
AjnI CCWGG 2 cut(s) 167, 270
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 1 cut(s) 392
AluI AGCT 1 cut(s) 392
Alw21I GWGCWC 2 cut(s) 51, 312
Alw26I GTCTC 1 cut(s) 186
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 2 cut(s) 106, 391
AoxI GGCC 1 cut(s) 373
ApaLI GTGCAC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 216
ArsI GACNNNNNNTTYG 2 cut(s) 319, 351
AspLEI GCGC 2 cut(s) 57, 238
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 51, 312
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 228
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 2 cut(s) 169, 272
BcoDI GTCTC 1 cut(s) 186
BisI GCNGC 4 cut(s) 72, 165, 200, 217
BlsI GCNGC 4 cut(s) 73, 166, 201, 218
Bme1390I CCNGG 2 cut(s) 169, 272
BmgBI CACGTC 2 cut(s) 46, 343
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 2 cut(s) 169, 272
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 2 cut(s) 147, 306
BmuI ACTGGG 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 320
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 266
BseBI CCWGG 2 cut(s) 169, 272
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 267
BseJI GATNNNNATC 1 cut(s) 266
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 375
BshNI GGYRCC 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 51, 312
BsiSI CCGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsnI GGCC 1 cut(s) 375
Bsp1286I GDGCHC 2 cut(s) 51, 312
Bsp143I GATC 4 cut(s) 111, 141, 285, 383
BspACI CCGC 7 cut(s) 13, 61, 72, 82, 165, 200, 305
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 2 cut(s) 106, 391
BspQI GCTCTTC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 135
BsrBI CCGCTC 2 cut(s) 15, 202
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 4 cut(s) 111, 141, 285, 383
BssNI GRCGYC 1 cut(s) 251
Bst2UI CCWGG 2 cut(s) 169, 272
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 3 cut(s) 122, 179, 215
BstACI GRCGYC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 122, 393
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 2 cut(s) 57, 238
BstKTI GATC 4 cut(s) 114, 144, 288, 386
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 4 cut(s) 111, 141, 285, 383
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 2 cut(s) 169, 272
BstSCI CCNGG 2 cut(s) 167, 270
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BsuRI GGCC 1 cut(s) 375
BtrI CACGTC 2 cut(s) 46, 343
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 2 cut(s) 57, 238
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 374
CviAII CATG 2 cut(s) 85, 259
CviJI RGCY 6 cut(s) 126, 172, 199, 278, 375, 392
CviKI_1 RGCY 6 cut(s) 126, 172, 199, 278, 375, 392
DdeI CTNAG 2 cut(s) 122, 393
DpnI GATC 4 cut(s) 113, 143, 287, 385
DpnII GATC 4 cut(s) 111, 141, 285, 383
Eam1104I CTCTTC 3 cut(s) 122, 179, 215
EarI CTCTTC 3 cut(s) 122, 179, 215
Eco57I CTGAAG 1 cut(s) 372
EcoRII CCWGG 2 cut(s) 167, 270
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 88, 262
FaiI YATR 2 cut(s) 86, 260
FatI CATG 2 cut(s) 84, 258
Fnu4HI GCNGC 4 cut(s) 72, 165, 200, 217
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 4 cut(s) 72, 165, 200, 217
GlaI GCGC 2 cut(s) 56, 237
GluI GCNGC 4 cut(s) 72, 165, 200, 217
HaeIII GGCC 1 cut(s) 375
HapII CCGG 1 cut(s) 372
HhaI GCGC 2 cut(s) 57, 238
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 2 cut(s) 88, 262
Hin6I GCGC 2 cut(s) 55, 236
HinP1I GCGC 2 cut(s) 55, 236
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 3 cut(s) 191, 249, 383
Hpy188III TCNNGA 3 cut(s) 109, 154, 226
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 4 cut(s) 47, 104, 227, 347
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 3 cut(s) 45, 251, 342
HpyCH4V TGCA 2 cut(s) 310, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 2 cut(s) 122, 393
HpySE526I ACGT 3 cut(s) 45, 251, 342
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 2 cut(s) 88, 262
HspAI GCGC 2 cut(s) 55, 236
Kzo9I GATC 4 cut(s) 111, 141, 285, 383
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 9 cut(s) 122, 154, 181, 240, 257, 284, 345, 385, 390
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 2 cut(s) 147, 306
MaeII ACGT 3 cut(s) 45, 251, 342
MaeIII GTNAC 1 cut(s) 226
MalI GATC 4 cut(s) 113, 143, 287, 385
MbiI CCGCTC 2 cut(s) 15, 202
MboI GATC 4 cut(s) 111, 141, 285, 383
MboII GAAGA 5 cut(s) 109, 166, 202, 337, 378
MflI RGATCY 1 cut(s) 383
MhlI GDGCHC 2 cut(s) 51, 312
MmeI TCCRAC 1 cut(s) 361
MslI CAYNNNNRTG 4 cut(s) 155, 224, 272, 345
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 169, 272
MvaI CCWGG 2 cut(s) 169, 272
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 4 cut(s) 111, 141, 285, 383
NlaIII CATG 2 cut(s) 88, 262
NlaIV GGNNCC 1 cut(s) 137
NmeAIII GCCGAG 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 226
OliI CACNNNNGTG 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 201, 219
PkrI GCNGC 4 cut(s) 73, 166, 201, 218
Psp6I CCWGG 2 cut(s) 167, 270
PspGI CCWGG 2 cut(s) 167, 270
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 1 cut(s) 374
PsuI RGATCY 1 cut(s) 383
RseI CAYNNNNRTG 4 cut(s) 155, 224, 272, 345
SapI GCTCTTC 1 cut(s) 179
SatI GCNGC 4 cut(s) 72, 165, 200, 217
Sau3AI GATC 4 cut(s) 111, 141, 285, 383
Sau96I GGNCC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 169, 272
SduI GDGCHC 2 cut(s) 51, 312
SetI ASST 5 cut(s) 26, 48, 254, 345, 394
SfaNI GCATC 2 cut(s) 147, 306
SmiMI CAYNNNNRTG 4 cut(s) 155, 224, 272, 345
SsiI CCGC 7 cut(s) 13, 61, 72, 82, 165, 200, 305
StyD4I CCNGG 2 cut(s) 167, 270
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 3 cut(s) 48, 254, 345
TaqI TCGA 2 cut(s) 6, 345
TauI GCSGC 3 cut(s) 74, 167, 202
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 101, 278
VneI GTGCAC 1 cut(s) 308
ZraI GACGTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.