MD17G1045700.v1.1

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013966
Physical Location & Seq
Forward (+)
3330751 .. 3331074
324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1045700.v1.1.491

Sequence Viewer

Length: 324 bp
ATGTTCAACTTCCGGTCCTTCAACTTCCCCTCCTCCTTCTCCGACGCCTTCGGGCGGGTCCGATCGAGCGTCGCCTACTTCCGGATGAACTATGCCATTGTGGTGCTCCTGATCCTGTTCCTCAGCCTGCTCTGGCATCCGATCTTTCTCATCGTCTTCCTCCGCGACGAGCCGCTGGTACTATTCAAAAAAAAAAAAACGGTAGACGACCGCGTCGTTTTGATCATGCTGGCGATCGTGACGATCGTGCTGTTGTTCTTGACCCACGCGACGGTGAATATTCTAGTGGCACTGCTGATTGGGAATTTGGGGTTGTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

10.01

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 1 - 103 1.2e-22 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013966)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17700
fragaria_vesca FvH4_1g19140 FvH4_6g04220 FvH4_6g33130
malus_domestica MD14G1066400.v1.1 MD17G1045700.v1.1 MD17G1175300.v1.1
prunus_persica Prupe.3G051300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0142821
rosa_laevigata RLG00000019988
rosa_multiflora Rmu_sc0002358.1_g000017
rosa_roxburghii Rroxscaffold_2G00102290 Rroxscaffold_2G00103340
rosa_rugosa Rorug02G0375500
rosa_samantha Rh2AG428600 Rh2CG414200
rosa_wichuraiana Rw2G035050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 204
AccII CGCG 3 cut(s) 165, 213, 269
AccIII TCCGGA 1 cut(s) 81
AciI CCGC 4 cut(s) 55, 163, 173, 211
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 3 cut(s) 54, 81, 271
AgsI TTSAA 3 cut(s) 7, 22, 187
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 1 cut(s) 106
Aor13HI TCCGGA 1 cut(s) 81
ApoI RAATTY 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 15, 58
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 2 cut(s) 15, 58
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 122
BclI TGATCA 1 cut(s) 222
BfaI CTAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme18I GGWCC 2 cut(s) 15, 58
BmgT120I GGNCC 2 cut(s) 15, 58
BmiI GGNNCC 1 cut(s) 59
BmsI GCATC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 45
BsaWI WCCGGW 2 cut(s) 12, 81
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 81, 271
BseAI TCCGGA 1 cut(s) 81
BseGI GGATG 2 cut(s) 90, 136
BseLI CCNNNNNNNGG 3 cut(s) 54, 81, 271
BseMII CTCAG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 22
Bsh1236I CGCG 3 cut(s) 165, 213, 269
Bsh1285I CGRYCG 4 cut(s) 65, 211, 237, 246
BsiEI CGRYCG 4 cut(s) 65, 211, 237, 246
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 2 cut(s) 13, 82
BslI CCNNNNNNNGG 3 cut(s) 54, 81, 271
Bsp1286I GDGCHC 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 6 cut(s) 62, 111, 141, 222, 234, 243
BspACI CCGC 4 cut(s) 55, 163, 173, 211
BspCNI CTCAG 1 cut(s) 135
BspEI TCCGGA 1 cut(s) 81
BspFNI CGCG 3 cut(s) 165, 213, 269
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 1 cut(s) 106
BssMI GATC 6 cut(s) 62, 111, 141, 222, 234, 243
BssNI GRCGYC 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 202, 274
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 128, 231
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 90, 136
BstFNI CGCG 3 cut(s) 165, 213, 269
BstKTI GATC 6 cut(s) 65, 114, 144, 225, 237, 246
BstMBI GATC 6 cut(s) 62, 111, 141, 222, 234, 243
BstMCI CGRYCG 4 cut(s) 65, 211, 237, 246
BstUI CGCG 3 cut(s) 165, 213, 269
BstV2I GAAGAC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 90, 136
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 2 cut(s) 128, 231
Cfr13I GGNCC 2 cut(s) 15, 58
CseI GACGC 3 cut(s) 53, 58, 202
Csp6I GTAC 1 cut(s) 179
CviAII CATG 1 cut(s) 226
CviJI RGCY 2 cut(s) 126, 172
CviKI_1 RGCY 2 cut(s) 126, 172
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 122
DpnI GATC 6 cut(s) 64, 113, 143, 224, 236, 245
DpnII GATC 6 cut(s) 62, 111, 141, 222, 234, 243
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 15, 58
FaeI CATG 1 cut(s) 229
FaiI YATR 2 cut(s) 93, 227
FatI CATG 1 cut(s) 225
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 222
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 2 cut(s) 97, 123
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 173
HapII CCGG 2 cut(s) 13, 82
HgaI GACGC 3 cut(s) 53, 58, 202
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 229
HpaII CCGG 2 cut(s) 13, 82
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 3 cut(s) 43, 62, 141
Hpy188III TCNNGA 4 cut(s) 82, 109, 238, 259
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 5 cut(s) 47, 74, 170, 218, 274
HpyAV CCTTC 3 cut(s) 28, 46, 58
HpyCH4III ACNGT 2 cut(s) 202, 274
HpyF3I CTNAG 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 229
Kpn2I TCCGGA 1 cut(s) 81
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 6 cut(s) 62, 111, 141, 222, 234, 243
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 8 cut(s) 26, 95, 118, 122, 128, 140, 161, 215
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 238
MalI GATC 6 cut(s) 64, 113, 143, 224, 236, 245
MboI GATC 6 cut(s) 62, 111, 141, 222, 234, 243
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 4 cut(s) 40, 43, 131, 170
MroI TCCGGA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 2 cut(s) 13, 82
MvnI CGCG 3 cut(s) 165, 213, 269
NdeII GATC 6 cut(s) 62, 111, 141, 222, 234, 243
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 238
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 243
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 174
Ple19I CGATCG 3 cut(s) 65, 237, 246
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 15, 58
PsyI GACNNNGTC 1 cut(s) 212
PvuI CGATCG 3 cut(s) 65, 237, 246
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 101
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 6 cut(s) 62, 111, 141, 222, 234, 243
Sau96I GGNCC 2 cut(s) 15, 58
SduI GDGCHC 1 cut(s) 108
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 2 cut(s) 15, 58
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 1 cut(s) 304
SsiI CCGC 4 cut(s) 55, 163, 173, 211
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 202, 274
TaqI TCGA 1 cut(s) 65
TasI AATT 1 cut(s) 304
TauI GCSGC 1 cut(s) 175
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 297
Tth111I GACNNNGTC 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 15, 58
XapI RAATTY 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.