AT1G17870

zinc metallopeptidase EGY3, chloroplastic

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
6149939 .. 6152222
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17870.1

Sequence Viewer

Length: 1722 bp
ATGGCTTCTCTCTTTGTTTCTACTCCATCATCTTCCTTAACTCTTAAATCCTGTCACAGTTTGCATCTTCGTCGCTTTGACAGAGCAGAATTTTCGAACTTTGGGAAAGCTTCTGTGAATCAGACAACGAGAAGCAGACATTCTTTGAGATGTTCAGCGGAAGATGATCGCGTTCGTGAACCTGTGAACGAAGCTCCTTCTCCGGTGGCGTTAGCGGAGGAGCAAAAAGAAGACCACGATAACAATAATGCGCCGCCTTCTCCAGAGAGCAGTGAAGAAGAGGAGGAAAAGAAGTCGAAGCAGCAAGAGATGGATTGGAAAACAGACGAGGAGTTCAAGAAGTTTATGGGGAATCCATCTATCGAAGCTGCGATAAAGCTTGAGAAGACGAGAACTGATCGTAAGCTCAAGGAGCTGAACAAGGAAAGCAACAGTGAGAATCCGATCATTGGAATTTACAACAGCTTGGCTCGTGATAGTTTGACTAAAGAGAAAGAAAGGCTTGAGAAAGCAGAAGAGACTTTCAAGGCTCTTGATCTCAACAAGTTGAAGAGCTGTTTTGGGTTCGATACATTTTTCGCTACGGATGTTCGCCGGTTTGGAGATGGAGGAATCTTCATTGGGAACCTGAGAAAACCCATTGATGAAGTCACACCTAAGCTTGAAGCTAAGCTATCTGAAGCAGCTGGGCGTGATGTTGTTGTGTGGTTTATGGAAGAAAGGTCCAATGAGATCACAAAGCAGGTGTGTATGGTGCAGCCGAAGGCGGAAATTGATCTACAGTTTGAATCAACTAGATTAAGCACTCCTTGGGGATATGTTAGTGCAATTGCTTTATGTGTTACAACCTTTGGAACCATAGCTCTTATGAGTGGGTTTTTCCTGAAACCCGACGCCACTTTTGATGACTACATTGCTAATGTAGTTCCTCTTTTTGGCGGGTTCCTTTCCATCTTAGGTGTCTCAGAGATAGCAACTAGAGTAACCGCTGCGCGACACGGTGTCAAATTAAGCCCGTCGTTTCTTGTGCCATCAAATTGGACTGGTTGCTTAGGAGTTATGAACAATTATGAGTCATTGCTTCCTAATAAAAAGGCGTTATTCGACATCCCAGTAGCCCGTACAGCTAGCGCGTACCTGACCTCGCTTCTGCTTGCAGCAGCTGCGTTTATATCTGATGGTAGTTTCAATGGAGGTGACAATGCTTTGTATATAAGACCACAGTTCTTTGACAATAACCCGTTGCTTTCATTTGTCCAATTCGTTGTTGGTCCTTATGCGGATGATCTTGGTAATGTATTACCTAATGCGGTTGAAGGAGTTGGTGTTCCAGTTGATCCGCTCGCTTTCGCTGGTCTTTTGGGTATGGTAGTGACTTCATTGAACTTATTACCATGTGGAAGACTTGAAGGAGGTCGAATCGCTCAAGCCATGTTTGGAAGAAGCACAGCTGCAATTCTCTCATTTACCACATCACTCCTTCTTGGTATCGGAGGTCTCAGCGGAAGCGTCTTGTGTTTAGCTTGGGGGCTATTCGCAACCTTCTTCCGCGGTGGCGAAGAAACACCCGCAAAAGACGAAATCACACCTGTAGGGGACGATAGGTTCGCTTGGGGTATAGTCCTTGGACTCATTTGCTTCCTCACTCTATTTCCTAACAGTGGAGGTACTTTCTCCACTTCATTCTTCAATGGACCTTTCTTCCGTGGTGATGATTTCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

573

Amino Acids

62.72

Weight (kDa)

5.12

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016229)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17870
fragaria_vesca FvH4_2g03320
malus_domestica MD10G1110200.v1.1
prunus_persica Prupe.8G150400_v2.0.a1
pyrus_communis pycom10g09570
rosa_chinensis RchiOBHm_Chr6g0248441
rosa_laevigata RLG00000015153
rosa_roxburghii Rroxscaffold_7G00213280
rosa_rugosa Rorug05G0531100 Rorug05G0531200
rosa_samantha Rh6AG047000 Rh6BG043600 Rh6CG040300 Rh6DG036800
rosa_wichuraiana Rw6G004100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 733
Acc36I ACCTGC 1 cut(s) 733
AccBSI CCGCTC 1 cut(s) 1342
AccII CGCG 4 cut(s) 171, 994, 1133, 1551
AclWI GGATC 1 cut(s) 1331
AcsI RAATTY 2 cut(s) 89, 453
AcuI CTGAAG 1 cut(s) 699
AcyI GRCGYC 1 cut(s) 894
AfaI GTAC 3 cut(s) 1123, 1136, 1669
AfiI CCNNNNNNNGG 3 cut(s) 449, 935, 1661
AhdI GACNNNNNGTC 1 cut(s) 1001
AloI GAACNNNNNNTCC 4 cut(s) 1311, 1343, 1589, 1621
Alw26I GTCTC 3 cut(s) 512, 967, 1502
AlwI GGATC 1 cut(s) 1331
AlwNI CAGNNNCTG 1 cut(s) 1163
ApeKI GCWGC 9 cut(s) 301, 368, 683, 757, 989, 1157, 1160, 1163, 1451
ApoI RAATTY 2 cut(s) 89, 453
ArsI GACNNNNNNTTYG 4 cut(s) 884, 916, 1589, 1621
AspLEI GCGC 3 cut(s) 253, 994, 1133
AspS9I GGNCC 3 cut(s) 723, 1271, 1694
AsuHPI GGTGA 2 cut(s) 1208, 1721
AsuII TTCGAA 1 cut(s) 95
AsuNHI GCTAGC 1 cut(s) 1127
AvaII GGWCC 3 cut(s) 723, 1271, 1694
BauI CACGAG 1 cut(s) 471
BbsI GAAGAC 3 cut(s) 237, 392, 1408
BbvI GCAGC 9 cut(s) 313, 355, 695, 769, 976, 1150, 1169, 1172, 1438
BccI CCATC 7 cut(s) 34, 304, 364, 599, 959, 1039, 1172
BcgI CGANNNNNNTGC 4 cut(s) 53, 75, 87, 109
BcoDI GTCTC 3 cut(s) 512, 967, 1502
BfaI CTAG 3 cut(s) 795, 978, 1128
BfmI CTRYAG 2 cut(s) 779, 1590
BfuAI ACCTGC 1 cut(s) 733
BlpI GCTNAGC 1 cut(s) 669
Bme18I GGWCC 3 cut(s) 723, 1271, 1694
BmeRI GACNNNNNGTC 1 cut(s) 1001
BmgT120I GGNCC 3 cut(s) 723, 1271, 1694
BmiI GGNNCC 3 cut(s) 626, 856, 944
BmrI ACTGGG 1 cut(s) 1106
BmsI GCATC 1 cut(s) 73
BmtI GCTAGC 1 cut(s) 1131
BmuI ACTGGG 1 cut(s) 1106
BpiI GAAGAC 3 cut(s) 237, 392, 1408
BpmI CTGGAG 1 cut(s) 246
Bpu10I CCTNAGC 2 cut(s) 657, 1051
Bpu1102I GCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 95
BpuEI CTTGAG 4 cut(s) 392, 401, 524, 1410
BsaHI GRCGYC 1 cut(s) 894
BsaI GGTCTC 1 cut(s) 1502
BsaJI CCNNGG 4 cut(s) 809, 1549, 1624, 1705
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 1311, 1341
Bsc4I CCNNNNNNNGG 3 cut(s) 449, 935, 1661
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 3 cut(s) 1048, 1112, 1331
Bse3DI GCAATG 2 cut(s) 912, 1076
BseDI CCNNGG 4 cut(s) 809, 1549, 1624, 1705
BseGI GGATG 3 cut(s) 592, 1107, 1288
BseLI CCNNNNNNNGG 3 cut(s) 449, 935, 1661
BseMI GCAATG 2 cut(s) 912, 1076
BseMII CTCAG 3 cut(s) 620, 978, 1513
BseNI ACTGG 3 cut(s) 1048, 1112, 1331
BseRI GAGGAG 3 cut(s) 233, 296, 344
BseXI GCAGC 9 cut(s) 313, 355, 695, 769, 976, 1150, 1169, 1172, 1438
BseYI CCCAGC 1 cut(s) 686
BsgI GTGCAG 1 cut(s) 776
Bsh1236I CGCG 4 cut(s) 171, 994, 1133, 1551
BsiSI CCGG 2 cut(s) 203, 595
BslFI GGGAC 1 cut(s) 1610
BslI CCNNNNNNNGG 3 cut(s) 449, 935, 1661
BsmAI GTCTC 3 cut(s) 512, 967, 1502
BsmFI GGGAC 1 cut(s) 1610
Bso31I GGTCTC 1 cut(s) 1502
Bsp119I TTCGAA 1 cut(s) 95
Bsp143I GATC 8 cut(s) 166, 397, 444, 535, 732, 775, 1285, 1336
Bsp1720I GCTNAGC 1 cut(s) 669
BspCNI CTCAG 3 cut(s) 621, 977, 1512
BspFNI CGCG 4 cut(s) 171, 994, 1133, 1551
BspLI GGNNCC 3 cut(s) 626, 856, 944
BspMI ACCTGC 1 cut(s) 733
BspOI GCTAGC 1 cut(s) 1131
BspPI GGATC 1 cut(s) 1331
BspQI GCTCTTC 1 cut(s) 545
BspT104I TTCGAA 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 1502
BsrBI CCGCTC 1 cut(s) 1342
BsrDI GCAATG 2 cut(s) 912, 1076
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 3 cut(s) 1048, 1112, 1331
BssAI RCCGGY 1 cut(s) 594
BssECI CCNNGG 4 cut(s) 809, 1549, 1624, 1705
BssMI GATC 8 cut(s) 166, 397, 444, 535, 732, 775, 1285, 1336
BssNI GRCGYC 1 cut(s) 894
BssSI CACGAG 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 809, 1624
Bst2BI CACGAG 1 cut(s) 471
Bst4CI ACNGT 6 cut(s) 59, 434, 783, 1001, 1224, 1661
Bst6I CTCTTC 3 cut(s) 273, 510, 545
BstACI GRCGYC 1 cut(s) 894
BstAPI GCANNNNNTGC 1 cut(s) 1163
BstBI TTCGAA 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 1129, 1155, 1344
BstDEI CTNAG 7 cut(s) 629, 657, 669, 955, 964, 1051, 1499
BstDSI CCRYGG 2 cut(s) 1549, 1705
BstF5I GGATG 3 cut(s) 592, 1107, 1288
BstFNI CGCG 4 cut(s) 171, 994, 1133, 1551
BstHHI GCGC 3 cut(s) 253, 994, 1133
BstKTI GATC 8 cut(s) 169, 400, 447, 538, 735, 778, 1288, 1339
BstMAI GTCTC 3 cut(s) 512, 967, 1502
BstMBI GATC 8 cut(s) 166, 397, 444, 535, 732, 775, 1285, 1336
BstMWI GCNNNNNNNGC 3 cut(s) 412, 1124, 1163
BstSFI CTRYAG 2 cut(s) 779, 1590
BstUI CGCG 4 cut(s) 171, 994, 1133, 1551
BstV1I GCAGC 9 cut(s) 313, 355, 695, 769, 976, 1150, 1169, 1172, 1438
BstV2I GAAGAC 3 cut(s) 237, 392, 1408
BstXI CCANNNNNNTGG 1 cut(s) 1038
BtgI CCRYGG 2 cut(s) 1549, 1705
BtsCI GGATG 3 cut(s) 592, 1107, 1288
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 3 cut(s) 277, 439, 1666
BveI ACCTGC 1 cut(s) 733
Cac8I GCNNGC 3 cut(s) 1129, 1155, 1344
CaiI CAGNNNCTG 1 cut(s) 1163
CfoI GCGC 3 cut(s) 253, 994, 1133
Cfr10I RCCGGY 1 cut(s) 594
Cfr13I GGNCC 3 cut(s) 723, 1271, 1694
Cfr42I CCGCGG 1 cut(s) 1552
CseI GACGC 2 cut(s) 902, 1498
Csp6I GTAC 3 cut(s) 1122, 1135, 1668
CviAII CATG 2 cut(s) 1395, 1432
CviQI GTAC 3 cut(s) 1122, 1135, 1668
DdeI CTNAG 7 cut(s) 629, 657, 669, 955, 964, 1051, 1499
DpnI GATC 8 cut(s) 168, 399, 446, 537, 734, 777, 1287, 1338
DpnII GATC 8 cut(s) 166, 397, 444, 535, 732, 775, 1285, 1336
DriI GACNNNNNGTC 1 cut(s) 1001
Eam1104I CTCTTC 3 cut(s) 273, 510, 545
Eam1105I GACNNNNNGTC 1 cut(s) 1001
EarI CTCTTC 3 cut(s) 273, 510, 545
EciI GGCGGA 1 cut(s) 782
Eco130I CCWWGG 2 cut(s) 809, 1624
Eco31I GGTCTC 1 cut(s) 1502
Eco47I GGWCC 3 cut(s) 723, 1271, 1694
Eco57I CTGAAG 1 cut(s) 699
EcoT14I CCWWGG 2 cut(s) 809, 1624
ErhI CCWWGG 2 cut(s) 809, 1624
FaeI CATG 2 cut(s) 1398, 1435
FalI AAGNNNNNCTT 4 cut(s) 486, 518, 793, 825
FaqI GGGAC 1 cut(s) 1610
FatI CATG 2 cut(s) 1394, 1431
FauI CCCGC 2 cut(s) 932, 1576
FokI GGATG 3 cut(s) 599, 1094, 1295
FspBI CTAG 3 cut(s) 795, 978, 1128
GlaI GCGC 3 cut(s) 252, 993, 1132
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 246
HapII CCGG 2 cut(s) 203, 595
HgaI GACGC 2 cut(s) 902, 1498
HhaI GCGC 3 cut(s) 253, 994, 1133
Hin1I GRCGYC 1 cut(s) 894
Hin1II CATG 2 cut(s) 1398, 1435
Hin6I GCGC 3 cut(s) 251, 992, 1131
HinP1I GCGC 3 cut(s) 251, 992, 1131
HindIII AAGCTT 3 cut(s) 108, 377, 659
HinfI GANTC 8 cut(s) 118, 352, 439, 612, 788, 1073, 1419, 1629
HpaII CCGG 2 cut(s) 203, 595
HphI GGTGA 2 cut(s) 1208, 1721
Hpy166II GTNNAC 2 cut(s) 179, 187
Hpy188I TCNGA 6 cut(s) 123, 444, 679, 967, 1177, 1493
Hpy188III TCNNGA 6 cut(s) 176, 263, 337, 473, 533, 883
Hpy8I GTNNAC 2 cut(s) 179, 187
Hpy99I CGWCG 3 cut(s) 75, 896, 1021
HpyAV CCTTC 7 cut(s) 207, 267, 757, 1310, 1403, 1490, 1552
HpyCH4III ACNGT 6 cut(s) 59, 434, 783, 1001, 1224, 1661
HpyCH4V TGCA 5 cut(s) 64, 757, 827, 1157, 1454
HpyF10VI GCNNNNNNNGC 3 cut(s) 412, 1124, 1163
HpyF3I CTNAG 7 cut(s) 629, 657, 669, 955, 964, 1051, 1499
Hsp92I GRCGYC 1 cut(s) 894
Hsp92II CATG 2 cut(s) 1398, 1435
HspAI GCGC 3 cut(s) 251, 992, 1131
KspI CCGCGG 1 cut(s) 1552
Kzo9I GATC 8 cut(s) 166, 397, 444, 535, 732, 775, 1285, 1336
LguI GCTCTTC 1 cut(s) 545
LmnI GCTCC 3 cut(s) 199, 220, 412
Lsp1109I GCAGC 9 cut(s) 313, 355, 695, 769, 976, 1150, 1169, 1172, 1438
LweI GCATC 1 cut(s) 73
MaeI CTAG 3 cut(s) 795, 978, 1128
MaeIII GTNAC 6 cut(s) 53, 649, 841, 982, 1196, 1372
MalI GATC 8 cut(s) 168, 399, 446, 537, 734, 777, 1287, 1338
MbiI CCGCTC 1 cut(s) 1342
MboI GATC 8 cut(s) 166, 397, 444, 535, 732, 775, 1285, 1336
MfeI CAATTG 1 cut(s) 828
MluCI AATT 9 cut(s) 89, 453, 771, 828, 1007, 1036, 1066, 1259, 1455
MlyI GAGTC 2 cut(s) 1082, 1623
MseI TTAA 4 cut(s) 38, 45, 800, 1010
MspA1I CMGCKG 7 cut(s) 158, 686, 989, 1163, 1451, 1503, 1551
MspI CCGG 2 cut(s) 203, 595
MunI CAATTG 1 cut(s) 828
MvnI CGCG 4 cut(s) 171, 994, 1133, 1551
MwoI GCNNNNNNNGC 3 cut(s) 412, 1124, 1163
NdeII GATC 8 cut(s) 166, 397, 444, 535, 732, 775, 1285, 1336
NheI GCTAGC 1 cut(s) 1127
NlaIII CATG 2 cut(s) 1398, 1435
NlaIV GGNNCC 3 cut(s) 626, 856, 944
NmuCI GTSAC 4 cut(s) 53, 649, 1196, 1372
NspV TTCGAA 1 cut(s) 95
PaqCI CACCTGC 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 545
PfeI GAWTC 6 cut(s) 118, 352, 439, 612, 788, 1419
PleI GAGTC 2 cut(s) 1081, 1623
PpsI GAGTC 2 cut(s) 1081, 1623
PspFI CCCAGC 1 cut(s) 686
PspN4I GGNNCC 3 cut(s) 626, 856, 944
PspPI GGNCC 3 cut(s) 723, 1271, 1694
PstNI CAGNNNCTG 1 cut(s) 1163
PvuII CAGCTG 3 cut(s) 686, 1163, 1451
RsaI GTAC 3 cut(s) 1123, 1136, 1669
RsaNI GTAC 3 cut(s) 1122, 1135, 1668
SacII CCGCGG 1 cut(s) 1552
SapI GCTCTTC 1 cut(s) 545
SaqAI TTAA 4 cut(s) 38, 45, 800, 1010
Sau3AI GATC 8 cut(s) 166, 397, 444, 535, 732, 775, 1285, 1336
Sau96I GGNCC 3 cut(s) 723, 1271, 1694
SchI GAGTC 2 cut(s) 1082, 1623
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 2 cut(s) 779, 1590
Sfr303I CCGCGG 1 cut(s) 1552
SfuI TTCGAA 1 cut(s) 95
SgrBI CCGCGG 1 cut(s) 1552
SinI GGWCC 3 cut(s) 723, 1271, 1694
SmlI CTYRAG 4 cut(s) 380, 407, 503, 1425
SmoI CTYRAG 4 cut(s) 380, 407, 503, 1425
Sse9I AATT 9 cut(s) 89, 453, 771, 828, 1007, 1036, 1066, 1259, 1455
SspMI CTAG 3 cut(s) 795, 978, 1128
StyI CCWWGG 2 cut(s) 809, 1624
TaaI ACNGT 6 cut(s) 59, 434, 783, 1001, 1224, 1661
TaqI TCGA 6 cut(s) 95, 296, 363, 567, 1104, 1417
TasI AATT 9 cut(s) 89, 453, 771, 828, 1007, 1036, 1066, 1259, 1455
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 6 cut(s) 118, 352, 439, 612, 788, 1419
Tru1I TTAA 4 cut(s) 38, 45, 800, 1010
Tru9I TTAA 4 cut(s) 38, 45, 800, 1010
TscAI CASTG 3 cut(s) 277, 439, 1666
TseFI GTSAC 4 cut(s) 53, 649, 1196, 1372
TseI GCWGC 9 cut(s) 301, 368, 683, 757, 989, 1157, 1160, 1163, 1451
Tsp45I GTSAC 4 cut(s) 53, 649, 1196, 1372
TspDTI ATGAA 6 cut(s) 607, 660, 1076, 1239, 1368, 1671
TspGWI ACGGA 2 cut(s) 599, 1694
TspRI CASTG 3 cut(s) 277, 439, 1666
VpaK11BI GGWCC 3 cut(s) 723, 1271, 1694
XapI RAATTY 2 cut(s) 89, 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 1265
XspI CTAG 3 cut(s) 795, 978, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.