Rh6AG047000

zinc metallopeptidase EGY3, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
6823869 .. 6828013
4145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG047000.1

Sequence Viewer

Length: 1374 bp
ATGGCTTCTGTTTCCATCACTTCACCTTCCAGCATACCTTCATGGTCTCCCAAGAACAAGAACACCAAAACCCCGTTTGCTAAAAGGACCCATTACTTGTCTTTTGCTTCATCTCCCAAACCCATTTCAAGAAAACATCCCATTACATTTTCCATGAAAGATGACCAATCTTCTTCTTCAGCTGTTGTTGTTTCTGATAAGCCAAGTGATGACAGTGATACCCAAAGGAGTGCAGAAGAAGAAGGTGAAAAGGGTGAAGAGGATGAGGAGAAAGAGAAGCAGCAAGAAATGGATTGGAAGACAGATGAGGAGTTCAAGAGGTTCATGGGGAACCCCTCTATTGAAGCTGCAATAAAGTTGGAGAAGAAGAGGGCAGATAGGAAACTCAAGGACCTTGATAGGGAAAGTAGTGATAACCCAATTGTAGGTCTCCTTAATAGAGTTATAAGAGATAGTTTGACTAGAGAGAAGGAGAGGTTGGAGAAAGCTGAAGAGACCTTCAAGGCTATTGACCTTAACAAGTTGAAGAGTTGTTTTGGATTTGATTCGTTTTTTCCAACTGATGTTCGGAGATTTGGAGATGGAGGCATATTTATTGGAAATTTGAGGAGACCAATTGAAGAGGTGATGCCCAAATTAGAGAAAAAGCTGTCTGAAGCGGCAGGACGGGAGGTTGTTTTATGGTTCATGGAGGAAAAAACAAATGACATCACAAAACAGGTCTGTATGGTGCAACCTAAAGCAGAAATAGATCTCCAATTTGAGTCTACCAAGCTGAGCACTCCTTGGGGTTATGTTAGTGCAGTAGCATTGTGTGTTGCTACTTTTGGGACAATAGCTCTGATGAGTGGCTTCTTCCTTAAACCTGGTGCTACCTTTGATGACTACCTAGCTGATGTTGTGCCTCTCTTCAGTGGCTTCATATCCATTTTGGGAGTTTCTGAGATAGCCACTAGAGTAACAGCAGCTCGGTATGGTGTAAAACTCAGCCCATCTTTTCTTGTGCCATCCAATTGGACAGGGTGTATAGGAGTGATGAATAACTATGAATCACTGCTTCCAAATAAGAAAGCTCTCTTTGATATTCCAGTGGCTCGCACAGCTAGTGCATATATTACATCTCTGGTGCTTGCAGTTGCTGCGTTTGTGGTCGATGGCAGCTTTAATGGGGGTGACAATGCATTGTATATAAGGCCCCAGTTTTTCTACAACAATCCACTACTTTCGTTTATCCAATTCGTTATTGGTCCTTATGCCGATGATCTTGGGAATGTACTACCCAATGCAGTGGAAGGTGTTGGAGTTCCTGTTGATCCCCTTGCTTTTGCTGGACTTCTAGGTGAGTTCCTTGGCCTTCTTAAGCCATATAATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

457

Amino Acids

50.58

Weight (kDa)

5.32

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016229)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17870
fragaria_vesca FvH4_2g03320
malus_domestica MD10G1110200.v1.1
prunus_persica Prupe.8G150400_v2.0.a1
pyrus_communis pycom10g09570
rosa_chinensis RchiOBHm_Chr6g0248441
rosa_laevigata RLG00000015153
rosa_roxburghii Rroxscaffold_7G00213280
rosa_rugosa Rorug05G0531100 Rorug05G0531200
rosa_samantha Rh6AG047000 Rh6BG043600 Rh6CG040300 Rh6DG036800
rosa_wichuraiana Rw6G004100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AccI GTMKAC 1 cut(s) 767
AciI CCGC 1 cut(s) 659
AclWI GGATC 1 cut(s) 1307
AcsI RAATTY 1 cut(s) 601
AcuI CTGAAG 4 cut(s) 162, 510, 675, 895
AfaI GTAC 1 cut(s) 1275
AfiI CCNNNNNNNGG 2 cut(s) 400, 425
AflII CTTAAG 1 cut(s) 1358
AgsI TTSAA 6 cut(s) 129, 316, 344, 502, 526, 620
AjnI CCWGG 1 cut(s) 865
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
Alw21I GWGCWC 1 cut(s) 782
Alw26I GTCTC 4 cut(s) 51, 434, 488, 604
AlwI GGATC 1 cut(s) 1307
AlwNI CAGNNNCTG 1 cut(s) 1139
AoxI GGCC 2 cut(s) 1193, 1351
ApeKI GCWGC 5 cut(s) 280, 347, 965, 1139, 1158
ApoI RAATTY 1 cut(s) 601
AspS9I GGNCC 4 cut(s) 87, 391, 1194, 1247
AsuHPI GGTGA 6 cut(s) 15, 257, 266, 637, 1184, 1352
AvaII GGWCC 3 cut(s) 87, 391, 1247
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 782
BbvI GCAGC 5 cut(s) 292, 334, 977, 1126, 1170
BccI CCATC 5 cut(s) 23, 575, 1000, 1015, 1148
BciT130I CCWGG 1 cut(s) 867
BcoDI GTCTC 4 cut(s) 51, 434, 488, 604
BfaI CTAG 5 cut(s) 462, 890, 954, 1104, 1337
BfrI CTTAAG 1 cut(s) 1358
BglII AGATCT 1 cut(s) 751
BisI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
BlpI GCTNAGC 1 cut(s) 776
BlsI GCNGC 6 cut(s) 282, 349, 661, 967, 1141, 1160
Bme1390I CCNGG 1 cut(s) 867
Bme18I GGWCC 3 cut(s) 87, 391, 1247
BmgT120I GGNCC 4 cut(s) 87, 391, 1194, 1247
BmiI GGNNCC 3 cut(s) 89, 332, 1196
BmrFI CCNGG 1 cut(s) 867
BmrI ACTGGG 1 cut(s) 1192
BmsI GCATC 1 cut(s) 618
BmuI ACTGGG 1 cut(s) 1192
BpiI GAAGAC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 371
BsaI GGTCTC 4 cut(s) 51, 434, 488, 604
BsaJI CCNNGG 2 cut(s) 785, 1348
BsaXI ACNNNNNCTCC 2 cut(s) 1293, 1323
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 425
Bse1I ACTGG 2 cut(s) 1088, 1198
BseBI CCWGG 1 cut(s) 867
BseDI CCNNGG 2 cut(s) 785, 1348
BseGI GGATG 3 cut(s) 136, 268, 1007
BseLI CCNNNNNNNGG 2 cut(s) 400, 425
BseMII CTCAG 3 cut(s) 767, 933, 1000
BseNI ACTGG 2 cut(s) 1088, 1198
BseRI GAGGAG 3 cut(s) 281, 323, 622
BseXI GCAGC 5 cut(s) 292, 334, 977, 1126, 1170
BsgI GTGCAG 2 cut(s) 252, 822
BshFI GGCC 2 cut(s) 1195, 1353
BsiHKAI GWGCWC 1 cut(s) 782
BslFI GGGAC 1 cut(s) 844
BslI CCNNNNNNNGG 2 cut(s) 400, 425
BsmAI GTCTC 4 cut(s) 51, 434, 488, 604
BsmFI GGGAC 1 cut(s) 844
BsnI GGCC 2 cut(s) 1195, 1353
Bso31I GGTCTC 4 cut(s) 51, 434, 488, 604
Bsp1286I GDGCHC 1 cut(s) 782
Bsp143I GATC 3 cut(s) 751, 1261, 1312
Bsp1720I GCTNAGC 1 cut(s) 776
BspACI CCGC 1 cut(s) 659
BspANI GGCC 2 cut(s) 1195, 1353
BspCNI CTCAG 3 cut(s) 768, 934, 999
BspLI GGNNCC 3 cut(s) 89, 332, 1196
BspPI GGATC 1 cut(s) 1307
BspTI CTTAAG 1 cut(s) 1358
BspTNI GGTCTC 4 cut(s) 51, 434, 488, 604
BsrI ACTGG 2 cut(s) 1088, 1198
BssECI CCNNGG 2 cut(s) 785, 1348
BssMI GATC 3 cut(s) 751, 1261, 1312
BssT1I CCWWGG 2 cut(s) 785, 1348
Bst2UI CCWGG 1 cut(s) 867
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 6 cut(s) 252, 362, 486, 521, 615, 914
BstAFI CTTAAG 1 cut(s) 1358
BstAPI GCANNNNNTGC 1 cut(s) 1139
BstC8I GCNNGC 2 cut(s) 1096, 1131
BstDEI CTNAG 3 cut(s) 776, 942, 986
BstF5I GGATG 3 cut(s) 136, 268, 1007
BstKTI GATC 3 cut(s) 754, 1264, 1315
BstMAI GTCTC 4 cut(s) 51, 434, 488, 604
BstMBI GATC 3 cut(s) 751, 1261, 1312
BstMWI GCNNNNNNNGC 2 cut(s) 1100, 1139
BstNI CCWGG 1 cut(s) 867
BstSCI CCNGG 1 cut(s) 865
BstV1I GCAGC 5 cut(s) 292, 334, 977, 1126, 1170
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 2 cut(s) 1014, 1288
BstYI RGATCY 1 cut(s) 751
BsuRI GGCC 2 cut(s) 1195, 1353
BtsCI GGATG 3 cut(s) 136, 268, 1007
BtsI GCAGTG 2 cut(s) 1052, 1293
BtsIMutI CAGTG 5 cut(s) 220, 919, 1052, 1095, 1293
Cac8I GCNNGC 2 cut(s) 1096, 1131
CaiI CAGNNNCTG 1 cut(s) 1139
Cfr13I GGNCC 4 cut(s) 87, 391, 1194, 1247
CsiI ACCWGGT 1 cut(s) 865
Csp6I GTAC 1 cut(s) 1274
CviAII CATG 4 cut(s) 42, 154, 325, 688
CviQI GTAC 1 cut(s) 1274
DdeI CTNAG 3 cut(s) 776, 942, 986
DpnI GATC 3 cut(s) 753, 1263, 1314
DpnII GATC 3 cut(s) 751, 1261, 1312
Eam1104I CTCTTC 6 cut(s) 252, 362, 486, 521, 615, 914
EarI CTCTTC 6 cut(s) 252, 362, 486, 521, 615, 914
Eco130I CCWWGG 2 cut(s) 785, 1348
Eco31I GGTCTC 4 cut(s) 51, 434, 488, 604
Eco47I GGWCC 3 cut(s) 87, 391, 1247
Eco57I CTGAAG 4 cut(s) 162, 510, 675, 895
EcoO109I RGGNCCY 3 cut(s) 87, 391, 1194
EcoRII CCWGG 1 cut(s) 865
EcoT14I CCWWGG 2 cut(s) 785, 1348
EcoT22I ATGCAT 1 cut(s) 1183
ErhI CCWWGG 2 cut(s) 785, 1348
FaeI CATG 4 cut(s) 45, 157, 328, 691
FaqI GGGAC 1 cut(s) 844
FatI CATG 4 cut(s) 41, 153, 324, 687
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
FokI GGATG 3 cut(s) 123, 275, 994
Fsp4HI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
FspBI CTAG 5 cut(s) 462, 890, 954, 1104, 1337
GluI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
HaeIII GGCC 2 cut(s) 1195, 1353
Hin1II CATG 4 cut(s) 45, 157, 328, 691
HinfI GANTC 3 cut(s) 545, 764, 1049
HphI GGTGA 6 cut(s) 15, 257, 266, 637, 1184, 1352
Hpy166II GTNNAC 1 cut(s) 768
Hpy188I TCNGA 5 cut(s) 196, 570, 655, 843, 943
Hpy188III TCNNGA 2 cut(s) 129, 316
Hpy8I GTNNAC 1 cut(s) 768
HpyAV CCTTC 7 cut(s) 36, 48, 236, 463, 508, 1286, 1364
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 8 cut(s) 233, 350, 733, 803, 1109, 1133, 1181, 1286
HpyF10VI GCNNNNNNNGC 2 cut(s) 1100, 1139
HpyF3I CTNAG 3 cut(s) 776, 942, 986
Hsp92II CATG 4 cut(s) 45, 157, 328, 691
Kzo9I GATC 3 cut(s) 751, 1261, 1312
Lsp1109I GCAGC 5 cut(s) 292, 334, 977, 1126, 1170
LweI GCATC 1 cut(s) 618
MabI ACCWGGT 1 cut(s) 865
MaeI CTAG 5 cut(s) 462, 890, 954, 1104, 1337
MaeIII GTNAC 2 cut(s) 958, 1172
MalI GATC 3 cut(s) 753, 1263, 1314
MboI GATC 3 cut(s) 751, 1261, 1312
MfeI CAATTG 3 cut(s) 420, 615, 1012
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 1 cut(s) 782
MluCI AATT 8 cut(s) 420, 601, 615, 635, 758, 1012, 1235, 1369
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 4 cut(s) 339, 459, 581, 1279
Mph1103I ATGCAT 1 cut(s) 1183
MseI TTAA 6 cut(s) 435, 516, 861, 1164, 1359, 1372
MspA1I CMGCKG 1 cut(s) 182
MspCI CTTAAG 1 cut(s) 1358
MspR9I CCNGG 1 cut(s) 867
MunI CAATTG 3 cut(s) 420, 615, 1012
MvaI CCWGG 1 cut(s) 867
MwoI GCNNNNNNNGC 2 cut(s) 1100, 1139
NdeII GATC 3 cut(s) 751, 1261, 1312
NlaIII CATG 4 cut(s) 45, 157, 328, 691
NlaIV GGNNCC 3 cut(s) 89, 332, 1196
NmuCI GTSAC 1 cut(s) 1172
NsiI ATGCAT 1 cut(s) 1183
PfeI GAWTC 2 cut(s) 545, 1049
PkrI GCNGC 6 cut(s) 282, 349, 661, 967, 1141, 1160
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
PpuMI RGGWCCY 2 cut(s) 87, 391
PsiI TTATAA 1 cut(s) 446
Psp5II RGGWCCY 2 cut(s) 87, 391
Psp6I CCWGG 1 cut(s) 865
PspGI CCWGG 1 cut(s) 865
PspN4I GGNNCC 3 cut(s) 89, 332, 1196
PspPI GGNCC 4 cut(s) 87, 391, 1194, 1247
PspPPI RGGWCCY 2 cut(s) 87, 391
PstNI CAGNNNCTG 1 cut(s) 1139
PsuI RGATCY 1 cut(s) 751
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 1275
RsaNI GTAC 1 cut(s) 1274
SaqAI TTAA 6 cut(s) 435, 516, 861, 1164, 1359, 1372
SatI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
Sau3AI GATC 3 cut(s) 751, 1261, 1312
Sau96I GGNCC 4 cut(s) 87, 391, 1194, 1247
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 1 cut(s) 867
SduI GDGCHC 1 cut(s) 782
SexAI ACCWGGT 1 cut(s) 865
SfaNI GCATC 1 cut(s) 618
SinI GGWCC 3 cut(s) 87, 391, 1247
SmlI CTYRAG 2 cut(s) 386, 1358
SmoI CTYRAG 2 cut(s) 386, 1358
Sse9I AATT 8 cut(s) 420, 601, 615, 635, 758, 1012, 1235, 1369
SsiI CCGC 1 cut(s) 659
SspMI CTAG 5 cut(s) 462, 890, 954, 1104, 1337
StyD4I CCNGG 1 cut(s) 865
StyI CCWWGG 2 cut(s) 785, 1348
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 1152
TasI AATT 8 cut(s) 420, 601, 615, 635, 758, 1012, 1235, 1369
TatI WGTACW 1 cut(s) 1273
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 2 cut(s) 545, 1049
Tru1I TTAA 6 cut(s) 435, 516, 861, 1164, 1359, 1372
Tru9I TTAA 6 cut(s) 435, 516, 861, 1164, 1359, 1372
TscAI CASTG 5 cut(s) 220, 919, 1059, 1095, 1293
TseFI GTSAC 1 cut(s) 1172
TseI GCWGC 5 cut(s) 280, 347, 965, 1139, 1158
Tsp45I GTSAC 1 cut(s) 1172
TspDTI ATGAA 8 cut(s) 30, 99, 170, 313, 676, 910, 1052, 1062
TspRI CASTG 5 cut(s) 220, 919, 1059, 1095, 1293
Vha464I CTTAAG 1 cut(s) 1358
VpaK11BI GGWCC 3 cut(s) 87, 391, 1247
XapI RAATTY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 1241
XmiI GTMKAC 1 cut(s) 767
XspI CTAG 5 cut(s) 462, 890, 954, 1104, 1337
Zsp2I ATGCAT 1 cut(s) 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.