RchiOBHm_Chr6g0248441

zinc metallopeptidase EGY3, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
4455894 .. 4459703
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22269

Sequence Viewer

Length: 1695 bp
ATGGCTTCTGTTTCCATCACTTCACCTTCCAGCATACCTTCATGGTCTCCCAAGAACAAGAACACCAAAACCCCATTTGCTAAAAGGACCCATTACTTGTCTTTTGCTTCATCTCCCAAACCCATTTCAAGAAAACATCCCATTACATTTTCCATGAAAGATGACCAATCTTCTTCTTCAGCTGTTGTAGTTTCTGATAAGCCAAGTGATGACAGTGATACCCAAAAGAGTGCAGAAGAAGAAGGTGAAAAGGGTGAAGAGGATGAGGAGAAAGAGAAGCAGCAAGAAATGGATTGGAAGACAGATGAGGAGTTCAAGAGGTTCATGGGGAACCCCTCTATTGAAGCTGCAATAAAGTTGGAGAAGAAGAGGGCAGATAGGAAACTCAAGGACCTTGATAGGGAAAGTAGTGATAACCCAATTGTAGGGCTCCTTAATAGAGTTATAAGAGATAGTTTGACTAGAGAGAAGGAGAGGTTGGAGAAAGCTGAAGAGACCTTCAAGGCTATTGACCTTAACAAGTTGAAGAGTTGTTTTGGATTTGATTCGTTTTTTCCAACTGATGTTCGGAGATTTGGAGATGGAGGCATATTTATTGGAAATTTGAGGAGACCAATTGAAGACGTGATGCCCAAATTAGAGAAAAAGCTGTCTGAAGCGGCAGGACGGGAGGTTGTTTTATGGTTCATGGAGGAAAAAACAAATGACATCACAAAACAGGTCTGTATGGTGCAACCTAAAGCAGAAATAGATCTCCAATTTGAGTCTACCAAGCTGAGCACTCCTTGGGGTTATTTTAGTGCAGTAGCATTGTGTGTTGCTACTTTTGGGACAATAGCTCTGACGAGTGGCTTCTTCCTTAAACCTGGTGCTACCTTTGATGACTACCTTGCTGATGTTGTGCCTCTCTTCAGTGGCTTTATATCCATTTTGGGAGTTTCTGAGATAGCCACTAGAGTAACAGCAGCTCGGTATGGTGTAAAACTCAGCCCATCTTTTCTTGTGCCATCCAATTGGACAGGGTGTATAGGAGTGATGAATAACTATGAATCACTGCTTCCAAATAAGAAAGCTCTCTTTGATATTCCAGTGGCTCGCACAGCTAGTGCATATATTACATCTCTGGTGCTTGCAGTTGCTGCGTTTGTGGTCGATGGCAGCTTTAATGGGGGTGACAATGCATTGTATATAAGGCCCCAGTTTTTCTACAACAATCCACTACTTTCGTTTATCCAATTCGTTATTGGTCCTTATGCCGATGATCTTGGGAATGTGCTACCCAATGCAGTGGAAGGTGTTGGAGTTCCTGTTGATCCCCTTGCTTTTGCTGGACTTCTAGGAATGGTGGTGACTTCTCTGAACTTGTTGCCTTGTGGAAGACTCGAAGGAGGGCGGATTGCACAGGCTATGTTTGGGAGAAGCACGGCTACTCTGCTATCCTTTGCCACCTCACTTTTACTTGGTATCGGTGGCCTGAGTGGAAGTGTCCTTTGCTTGGCATGGGGGTTATTTGCAACCTTCTTCCGAGGCGGAGAAGAAGTACCTGCAAAAGATGAGATCACACCCTTAGGAGATGACAGATTTGCTTGGGGCTGTGTCCTTGGCCTCATCTGTTTCCTCACTCTTTTCCCCAATGGCGGAGGAACATTCTCCAGCTCTTTTTTCAATGGACCATTCTTCAGGGGAGATCTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

564

Amino Acids

61.68

Weight (kDa)

5.28

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016229)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17870
fragaria_vesca FvH4_2g03320
malus_domestica MD10G1110200.v1.1
prunus_persica Prupe.8G150400_v2.0.a1
pyrus_communis pycom10g09570
rosa_chinensis RchiOBHm_Chr6g0248441
rosa_laevigata RLG00000015153
rosa_roxburghii Rroxscaffold_7G00213280
rosa_rugosa Rorug05G0531100 Rorug05G0531200
rosa_samantha Rh6AG047000 Rh6BG043600 Rh6CG040300 Rh6DG036800
rosa_wichuraiana Rw6G004100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
Acc36I ACCTGC 1 cut(s) 1552
AccI GTMKAC 1 cut(s) 767
AciI CCGC 4 cut(s) 659, 1393, 1530, 1638
AclWI GGATC 1 cut(s) 1307
AcsI RAATTY 1 cut(s) 601
AcuI CTGAAG 5 cut(s) 162, 510, 675, 895, 1663
AfaI GTAC 1 cut(s) 1542
AfiI CCNNNNNNNGG 4 cut(s) 400, 425, 1495, 1637
AgsI TTSAA 7 cut(s) 129, 316, 344, 502, 526, 620, 1666
AjiI CACGTC 1 cut(s) 625
AjnI CCWGG 1 cut(s) 865
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
Alw21I GWGCWC 1 cut(s) 782
Alw26I GTCTC 3 cut(s) 51, 488, 604
AlwI GGATC 1 cut(s) 1307
AlwNI CAGNNNCTG 1 cut(s) 1139
AoxI GGCC 3 cut(s) 1193, 1471, 1603
ApeKI GCWGC 5 cut(s) 280, 347, 965, 1139, 1158
ApoI RAATTY 1 cut(s) 601
AspS9I GGNCC 5 cut(s) 87, 391, 1194, 1247, 1670
AsuHPI GGTGA 5 cut(s) 15, 257, 266, 1184, 1360
AvaII GGWCC 4 cut(s) 87, 391, 1247, 1670
AxyI CCTNAGG 1 cut(s) 1567
BanII GRGCYC 1 cut(s) 432
BarI GAAGNNNNNNTAC 2 cut(s) 1411, 1443
BbsI GAAGAC 3 cut(s) 305, 627, 1384
Bbv12I GWGCWC 1 cut(s) 782
BbvI GCAGC 5 cut(s) 292, 334, 977, 1126, 1170
BccI CCATC 5 cut(s) 23, 575, 1000, 1015, 1148
BceAI ACGGC 1 cut(s) 1440
BciT130I CCWGG 1 cut(s) 867
BcoDI GTCTC 3 cut(s) 51, 488, 604
BfaI CTAG 4 cut(s) 462, 954, 1104, 1337
BfuAI ACCTGC 1 cut(s) 1552
BglII AGATCT 2 cut(s) 751, 1687
BisI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
BlpI GCTNAGC 1 cut(s) 776
BlsI GCNGC 6 cut(s) 282, 349, 661, 967, 1141, 1160
Bme1390I CCNGG 1 cut(s) 867
Bme18I GGWCC 4 cut(s) 87, 391, 1247, 1670
BmgBI CACGTC 1 cut(s) 625
BmgT120I GGNCC 5 cut(s) 87, 391, 1194, 1247, 1670
BmiI GGNNCC 4 cut(s) 89, 332, 431, 1196
BmrFI CCNGG 1 cut(s) 867
BmrI ACTGGG 1 cut(s) 1192
BmsI GCATC 1 cut(s) 618
BmuI ACTGGG 1 cut(s) 1192
BpiI GAAGAC 3 cut(s) 305, 627, 1384
BpmI CTGGAG 1 cut(s) 1636
Bpu1102I GCTNAGC 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 371
BsaI GGTCTC 3 cut(s) 51, 488, 604
BsaJI CCNNGG 3 cut(s) 785, 1525, 1600
BsaXI ACNNNNNCTCC 4 cut(s) 1293, 1323, 1524, 1554
Bsc4I CCNNNNNNNGG 4 cut(s) 400, 425, 1495, 1637
Bse1I ACTGG 2 cut(s) 1088, 1198
Bse21I CCTNAGG 1 cut(s) 1567
BseBI CCWGG 1 cut(s) 867
BseDI CCNNGG 3 cut(s) 785, 1525, 1600
BseGI GGATG 3 cut(s) 136, 268, 1007
BseLI CCNNNNNNNGG 4 cut(s) 400, 425, 1495, 1637
BseMII CTCAG 4 cut(s) 767, 933, 1000, 1466
BseNI ACTGG 2 cut(s) 1088, 1198
BseRI GAGGAG 3 cut(s) 281, 323, 622
BseXI GCAGC 5 cut(s) 292, 334, 977, 1126, 1170
BsgI GTGCAG 2 cut(s) 252, 822
BshFI GGCC 3 cut(s) 1195, 1473, 1605
BsiHKAI GWGCWC 1 cut(s) 782
BslFI GGGAC 1 cut(s) 844
BslI CCNNNNNNNGG 4 cut(s) 400, 425, 1495, 1637
BsmAI GTCTC 3 cut(s) 51, 488, 604
BsmFI GGGAC 1 cut(s) 844
BsnI GGCC 3 cut(s) 1195, 1473, 1605
Bso31I GGTCTC 3 cut(s) 51, 488, 604
Bsp1286I GDGCHC 2 cut(s) 432, 782
Bsp143I GATC 5 cut(s) 751, 1261, 1312, 1557, 1687
Bsp1720I GCTNAGC 1 cut(s) 776
BspACI CCGC 4 cut(s) 659, 1393, 1530, 1638
BspANI GGCC 3 cut(s) 1195, 1473, 1605
BspCNI CTCAG 4 cut(s) 768, 934, 999, 1467
BspLI GGNNCC 4 cut(s) 89, 332, 431, 1196
BspMI ACCTGC 1 cut(s) 1552
BspPI GGATC 1 cut(s) 1307
BspTNI GGTCTC 3 cut(s) 51, 488, 604
BsrI ACTGG 2 cut(s) 1088, 1198
BssECI CCNNGG 3 cut(s) 785, 1525, 1600
BssMI GATC 5 cut(s) 751, 1261, 1312, 1557, 1687
BssT1I CCWWGG 2 cut(s) 785, 1600
Bst2UI CCWGG 1 cut(s) 867
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 5 cut(s) 252, 362, 486, 521, 914
BstAPI GCANNNNNTGC 1 cut(s) 1139
BstC8I GCNNGC 2 cut(s) 1096, 1131
BstDEI CTNAG 5 cut(s) 776, 942, 986, 1475, 1567
BstF5I GGATG 3 cut(s) 136, 268, 1007
BstKTI GATC 5 cut(s) 754, 1264, 1315, 1560, 1690
BstMAI GTCTC 3 cut(s) 51, 488, 604
BstMBI GATC 5 cut(s) 751, 1261, 1312, 1557, 1687
BstMWI GCNNNNNNNGC 2 cut(s) 1100, 1139
BstNI CCWGG 1 cut(s) 867
BstSCI CCNGG 1 cut(s) 865
BstV1I GCAGC 5 cut(s) 292, 334, 977, 1126, 1170
BstV2I GAAGAC 3 cut(s) 305, 627, 1384
BstX2I RGATCY 2 cut(s) 751, 1687
BstXI CCANNNNNNTGG 2 cut(s) 1014, 1288
BstYI RGATCY 2 cut(s) 751, 1687
Bsu36I CCTNAGG 1 cut(s) 1567
BsuRI GGCC 3 cut(s) 1195, 1473, 1605
BtrI CACGTC 1 cut(s) 625
BtsCI GGATG 3 cut(s) 136, 268, 1007
BtsI GCAGTG 2 cut(s) 1052, 1293
BtsIMutI CAGTG 5 cut(s) 220, 919, 1052, 1095, 1293
BveI ACCTGC 1 cut(s) 1552
Cac8I GCNNGC 2 cut(s) 1096, 1131
CaiI CAGNNNCTG 1 cut(s) 1139
Cfr13I GGNCC 5 cut(s) 87, 391, 1194, 1247, 1670
CsiI ACCWGGT 1 cut(s) 865
Csp6I GTAC 1 cut(s) 1541
CviAII CATG 5 cut(s) 42, 154, 325, 688, 1500
CviQI GTAC 1 cut(s) 1541
DdeI CTNAG 5 cut(s) 776, 942, 986, 1475, 1567
DpnI GATC 5 cut(s) 753, 1263, 1314, 1559, 1689
DpnII GATC 5 cut(s) 751, 1261, 1312, 1557, 1687
Eam1104I CTCTTC 5 cut(s) 252, 362, 486, 521, 914
EarI CTCTTC 5 cut(s) 252, 362, 486, 521, 914
EciI GGCGGA 3 cut(s) 1408, 1545, 1653
Eco130I CCWWGG 2 cut(s) 785, 1600
Eco24I GRGCYC 1 cut(s) 432
Eco31I GGTCTC 3 cut(s) 51, 488, 604
Eco47I GGWCC 4 cut(s) 87, 391, 1247, 1670
Eco57I CTGAAG 5 cut(s) 162, 510, 675, 895, 1663
Eco81I CCTNAGG 1 cut(s) 1567
EcoO109I RGGNCCY 3 cut(s) 87, 391, 1194
EcoRII CCWGG 1 cut(s) 865
EcoT14I CCWWGG 2 cut(s) 785, 1600
EcoT22I ATGCAT 1 cut(s) 1183
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 2 cut(s) 785, 1600
FaeI CATG 5 cut(s) 45, 157, 328, 691, 1503
FaqI GGGAC 1 cut(s) 844
FatI CATG 5 cut(s) 41, 153, 324, 687, 1499
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
FokI GGATG 3 cut(s) 123, 275, 994
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
FspBI CTAG 4 cut(s) 462, 954, 1104, 1337
GluI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
GsuI CTGGAG 1 cut(s) 1636
HaeIII GGCC 3 cut(s) 1195, 1473, 1605
Hin1II CATG 5 cut(s) 45, 157, 328, 691, 1503
HinfI GANTC 4 cut(s) 545, 764, 1049, 1380
HphI GGTGA 5 cut(s) 15, 257, 266, 1184, 1360
Hpy166II GTNNAC 1 cut(s) 768
Hpy188I TCNGA 7 cut(s) 196, 570, 655, 843, 943, 1359, 1526
Hpy188III TCNNGA 2 cut(s) 129, 316
Hpy8I GTNNAC 1 cut(s) 768
HpyAV CCTTC 8 cut(s) 36, 48, 236, 463, 508, 1286, 1379, 1528
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 1100, 1139
HpyF3I CTNAG 5 cut(s) 776, 942, 986, 1475, 1567
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 5 cut(s) 45, 157, 328, 691, 1503
Kzo9I GATC 5 cut(s) 751, 1261, 1312, 1557, 1687
LmnI GCTCC 1 cut(s) 435
Lsp1109I GCAGC 5 cut(s) 292, 334, 977, 1126, 1170
LweI GCATC 1 cut(s) 618
MabI ACCWGGT 1 cut(s) 865
MaeI CTAG 4 cut(s) 462, 954, 1104, 1337
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 3 cut(s) 958, 1172, 1348
MalI GATC 5 cut(s) 753, 1263, 1314, 1559, 1689
MboI GATC 5 cut(s) 751, 1261, 1312, 1557, 1687
MfeI CAATTG 3 cut(s) 420, 615, 1012
MflI RGATCY 2 cut(s) 751, 1687
MhlI GDGCHC 2 cut(s) 432, 782
MluCI AATT 7 cut(s) 420, 601, 615, 635, 758, 1012, 1235
MlyI GAGTC 2 cut(s) 773, 1374
MmeI TCCRAC 4 cut(s) 339, 459, 581, 1279
Mph1103I ATGCAT 1 cut(s) 1183
MseI TTAA 4 cut(s) 435, 516, 861, 1164
MspA1I CMGCKG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 867
MunI CAATTG 3 cut(s) 420, 615, 1012
MvaI CCWGG 1 cut(s) 867
MwoI GCNNNNNNNGC 2 cut(s) 1100, 1139
NdeII GATC 5 cut(s) 751, 1261, 1312, 1557, 1687
NlaIII CATG 5 cut(s) 45, 157, 328, 691, 1503
NlaIV GGNNCC 4 cut(s) 89, 332, 431, 1196
NmuCI GTSAC 2 cut(s) 1172, 1348
NsiI ATGCAT 1 cut(s) 1183
PfeI GAWTC 2 cut(s) 545, 1049
PkrI GCNGC 6 cut(s) 282, 349, 661, 967, 1141, 1160
PleI GAGTC 2 cut(s) 772, 1374
PpsI GAGTC 2 cut(s) 772, 1374
PpuMI RGGWCCY 2 cut(s) 87, 391
PsiI TTATAA 1 cut(s) 446
Psp5II RGGWCCY 2 cut(s) 87, 391
Psp6I CCWGG 1 cut(s) 865
PspGI CCWGG 1 cut(s) 865
PspN4I GGNNCC 4 cut(s) 89, 332, 431, 1196
PspPI GGNCC 5 cut(s) 87, 391, 1194, 1247, 1670
PspPPI RGGWCCY 2 cut(s) 87, 391
PstNI CAGNNNCTG 1 cut(s) 1139
PsuI RGATCY 2 cut(s) 751, 1687
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 1542
RsaNI GTAC 1 cut(s) 1541
SaqAI TTAA 4 cut(s) 435, 516, 861, 1164
SatI GCNGC 6 cut(s) 281, 348, 660, 966, 1140, 1159
Sau3AI GATC 5 cut(s) 751, 1261, 1312, 1557, 1687
Sau96I GGNCC 5 cut(s) 87, 391, 1194, 1247, 1670
SchI GAGTC 2 cut(s) 773, 1374
ScrFI CCNGG 1 cut(s) 867
SduI GDGCHC 2 cut(s) 432, 782
SexAI ACCWGGT 1 cut(s) 865
SfaNI GCATC 1 cut(s) 618
SinI GGWCC 4 cut(s) 87, 391, 1247, 1670
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 7 cut(s) 420, 601, 615, 635, 758, 1012, 1235
SsiI CCGC 4 cut(s) 659, 1393, 1530, 1638
SspMI CTAG 4 cut(s) 462, 954, 1104, 1337
StyD4I CCNGG 1 cut(s) 865
StyI CCWWGG 2 cut(s) 785, 1600
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 627
TaqI TCGA 2 cut(s) 1152, 1383
TasI AATT 7 cut(s) 420, 601, 615, 635, 758, 1012, 1235
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 2 cut(s) 545, 1049
Tru1I TTAA 4 cut(s) 435, 516, 861, 1164
Tru9I TTAA 4 cut(s) 435, 516, 861, 1164
TscAI CASTG 5 cut(s) 220, 919, 1059, 1095, 1293
TseFI GTSAC 2 cut(s) 1172, 1348
TseI GCWGC 5 cut(s) 280, 347, 965, 1139, 1158
Tsp45I GTSAC 2 cut(s) 1172, 1348
TspDTI ATGAA 7 cut(s) 30, 99, 170, 313, 676, 1052, 1062
TspRI CASTG 5 cut(s) 220, 919, 1059, 1095, 1293
VpaK11BI GGWCC 4 cut(s) 87, 391, 1247, 1670
XapI RAATTY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 1241
XmiI GTMKAC 1 cut(s) 767
XspI CTAG 4 cut(s) 462, 954, 1104, 1337
Zsp2I ATGCAT 1 cut(s) 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.