Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016229

Physical Location & Seq

Genomic Coordinates Reverse (-)

71966344 .. 71966607

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0531200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAAACTGATGCACAAGAGGTGCAACGTCAACTTGCTGCCCAAGCTAGCTTGAATGCTTCAGCTTTGAGACGATTATATGAGGATCTGAGTTTAATTTTGGCTTCTCATAATAGTTTGAAAGTTAGCTATGTTAGTAGGAAGGCCAATGTAGTTGCCCATATGTTAGCTGCACATGGTAGTAGTATTGTGCAGGATTGTTTTTATGTTTCAGTCCCTAGTTTTCTAGCAGCTGCTATTGCAGCTGAAGTTCTAATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0042493 GO:0042542 GO:0046677 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.34

Weight (kDa)

6.24

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	1 - 59	2.4e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17870
fragaria_vesca	FvH4_2g03320
malus_domestica	MD10G1110200.v1.1
prunus_persica	Prupe.8G150400_v2.0.a1
pyrus_communis	pycom10g09570
rosa_chinensis	RchiOBHm_Chr6g0248441
rosa_laevigata	RLG00000015153
rosa_roxburghii	Rroxscaffold_7G00213280
rosa_rugosa	Rorug05G0531100 Rorug05G0531200
rosa_samantha	Rh6AG047000 Rh6BG043600 Rh6CG040300 Rh6DG036800
rosa_wichuraiana	Rw6G004100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	55, 121
AluBI	AGCT	7 cut(s)	47, 51, 65, 129, 170, 233, 245
AluI	AGCT	7 cut(s)	47, 51, 65, 129, 170, 233, 245
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	5 cut(s)	38, 170, 230, 233, 242
AsuNHI	GCTAGC	1 cut(s)	47
BbvI	GCAGC	5 cut(s)	25, 157, 220, 242, 254
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	3 cut(s)	48, 219, 227
BisI	GCNGC	5 cut(s)	39, 171, 231, 234, 243
BlsI	GCNGC	5 cut(s)	40, 172, 232, 235, 244
BmtI	GCTAGC	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	80
BseXI	GCAGC	5 cut(s)	25, 157, 220, 242, 254
BsgI	GTGCAG	2 cut(s)	156, 212
BshFI	GGCC	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	81
BspOI	GCTAGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	93
BssMI	GATC	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 239, 242
BstV1I	GCAGC	5 cut(s)	25, 157, 220, 242, 254
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	49
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	9 cut(s)	47, 51, 65, 104, 129, 146, 170, 233, 245
CviKI_1	RGCY	9 cut(s)	47, 51, 65, 104, 129, 146, 170, 233, 245
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	179
FaiI	YATR	8 cut(s)	79, 81, 111, 132, 162, 164, 177, 207
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	175
FauNDI	CATATG	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	39, 171, 231, 234, 243
Fsp4HI	GCNGC	5 cut(s)	39, 171, 231, 234, 243
FspBI	CTAG	3 cut(s)	48, 219, 227
GluI	GCNGC	5 cut(s)	39, 171, 231, 234, 243
HaeIII	GGCC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	90
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	5 cut(s)	14, 25, 173, 193, 242
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 239, 242
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	1 cut(s)	179
Lsp1109I	GCAGC	5 cut(s)	25, 157, 220, 242, 254
MaeI	CTAG	3 cut(s)	48, 219, 227
MaeII	ACGT	1 cut(s)	28
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	2 cut(s)	96, 255
MnlI	CCTC	2 cut(s)	13, 76
MseI	TTAA	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	233, 245
Mva1269I	GAATGC	1 cut(s)	61
MwoI	GCNNNNNNNGC	3 cut(s)	44, 239, 242
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	1 cut(s)	85
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	179
PctI	GAATGC	1 cut(s)	61
PkrI	GCNGC	5 cut(s)	40, 172, 232, 235, 244
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	2 cut(s)	233, 245
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	5 cut(s)	39, 171, 231, 234, 243
Sau3AI	GATC	1 cut(s)	85
SetI	ASST	9 cut(s)	24, 31, 49, 53, 67, 131, 172, 235, 247
SgeI	CNNG	9 cut(s)	29, 47, 56, 60, 64, 188, 206, 231, 239
Sse9I	AATT	2 cut(s)	96, 255
SspMI	CTAG	3 cut(s)	48, 219, 227
TaiI	ACGT	1 cut(s)	31
TasI	AATT	2 cut(s)	96, 255
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseI	GCWGC	5 cut(s)	38, 170, 230, 233, 242
XspI	CTAG	3 cut(s)	48, 219, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.