AT1G18250

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013502
Physical Location & Seq
Reverse (-)
6276777 .. 6278258
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18250.2

Sequence Viewer

Length: 732 bp
ATGGCTTCAATCAACCTCTTCCTCTTCGCTTTCCTTCTTCTTCTCTCTCACGCTTCAGCTTCAACGGTAATCTTCTACAACAAATGCAAACACCCAGTTTGGCCAGGTATCCAACCCAGCGCCGGTCAAAACTTACTCGCCGGCGGTGGTTTTAAGCTTCCAGCTAACAAAGCCCACTCTCTTCAACTCCCACCACTCTGGTCCGGCCGTTTCTGGGGTCGCCACGGCTGCACCTTCGACAGATCTGGCCGTGGTCACTGCGCCACCGGAGATTGCGGCGGTTCTCTCTCCTGCAACGGTGCCGGCGGTGAACCTCCGGCCACTCTCGCCGAAATCACTCTCGGCCCTGAGCTAGACTTCTATGACGTCAGCCTCGTCGACGGTTATAACCTGGCCATGTCGATTATGCCGGTTAAAGGTTCAGGTCAATGTAGCTACGCCGGTTGTGTTAGCGATCTAAACCAGATGTGTCCGGTTGGTTTACAAGTCCGGTCACGTAACGGGAAACGTGTAGTAGCCTGTAAAAGTGCTTGCTCTGCCTTCAATTCACCACAGTACTGTTGCACCGGCTTGTTCGGTAACCCACAGTCTTGCAAACCAACGGCTTACTCCAAAATCTTCAAAGTCGCTTGCCCAAAAGCTTACTCTTATGCTTACGACGACCCAACCAGTATCGCCACATGTTCCAAGGCTAACTACATCGTCACCTTTTGCCCTCATCATCGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

243

Amino Acids

25.91

Weight (kDa)

8.84

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 28 - 240 7.1e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18250 AT1G18250
fragaria_vesca FvH4_5g17260
malus_domestica MD06G1231200.v1.1 MD13G1184600.v1.1
prunus_persica Prupe.5G232500_v2.0.a1
pyrus_communis pycom06g20250
rosa_chinensis RchiOBHm_Chr7g0178521
rosa_laevigata RLG00000005440
rosa_multiflora Rmu_sc0002421.1_g000003 Rmu_sc0016060.1_g000004
rosa_roxburghii Rroxscaffold_3G00274840
rosa_rugosa Rorug06G0417800
rosa_samantha Rh7AG016300 Rh7BG015800 Rh7CG016500 Rh7DG016400
rosa_wichuraiana Rw7G001290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AatII GACGTC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 378
AciI CCGC 4 cut(s) 144, 276, 279, 306
AcoI YGGCCR 5 cut(s) 101, 205, 247, 318, 393
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 3 cut(s) 122, 214, 416
AflIII ACRYGT 2 cut(s) 508, 680
AgsI TTSAA 5 cut(s) 9, 63, 185, 544, 622
AjnI CCWGG 2 cut(s) 103, 390
AluBI AGCT 6 cut(s) 59, 157, 164, 352, 435, 641
AluI AGCT 6 cut(s) 59, 157, 164, 352, 435, 641
AoxI GGCC 6 cut(s) 101, 205, 247, 318, 343, 393
ApeKI GCWGC 1 cut(s) 228
AspLEI GCGC 2 cut(s) 122, 263
AspS9I GGNCC 2 cut(s) 201, 344
AsuHPI GGTGA 3 cut(s) 320, 540, 697
AvaII GGWCC 1 cut(s) 201
BalI TGGCCA 2 cut(s) 103, 395
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 215
BceAI ACGGC 4 cut(s) 192, 234, 241, 618
BciT130I CCWGG 2 cut(s) 105, 392
BciVI GTATCC 1 cut(s) 119
BfaI CTAG 1 cut(s) 353
BfoI RGCGCY 1 cut(s) 123
BfuI GTATCC 1 cut(s) 119
BglII AGATCT 1 cut(s) 242
BisI GCNGC 2 cut(s) 229, 277
BlsI GCNGC 2 cut(s) 230, 278
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 2 cut(s) 105, 392
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 2 cut(s) 201, 344
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 105, 392
BmrI ACTGGG 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 223, 250, 687
BsaWI WCCGGW 3 cut(s) 266, 472, 489
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 214, 416
Bse118I RCCGGY 6 cut(s) 122, 140, 302, 409, 440, 566
Bse1I ACTGG 2 cut(s) 95, 669
BseBI CCWGG 2 cut(s) 105, 392
BseDI CCNNGG 3 cut(s) 223, 250, 687
BseLI CCNNNNNNNGG 3 cut(s) 122, 214, 416
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 95, 669
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 6 cut(s) 103, 207, 249, 320, 345, 395
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 208
BslI CCNNNNNNNGG 3 cut(s) 122, 214, 416
BsnI GGCC 6 cut(s) 103, 207, 249, 320, 345, 395
Bsp143I GATC 2 cut(s) 242, 454
BspACI CCGC 4 cut(s) 144, 276, 279, 306
BspANI GGCC 6 cut(s) 103, 207, 249, 320, 345, 395
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 299
BsrFI RCCGGY 6 cut(s) 122, 140, 302, 409, 440, 566
BsrI ACTGG 2 cut(s) 95, 669
BssAI RCCGGY 6 cut(s) 122, 140, 302, 409, 440, 566
BssECI CCNNGG 3 cut(s) 223, 250, 687
BssMI GATC 2 cut(s) 242, 454
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 687
Bst2UI CCWGG 2 cut(s) 105, 392
Bst4CI ACNGT 6 cut(s) 67, 299, 383, 555, 560, 588
Bst6I CTCTTC 3 cut(s) 23, 29, 186
BstACI GRCGYC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 4 cut(s) 142, 304, 532, 631
BstDEI CTNAG 1 cut(s) 348
BstDSI CCRYGG 2 cut(s) 223, 250
BstEII GGTNACC 1 cut(s) 578
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 122, 263
BstKTI GATC 2 cut(s) 245, 457
BstMBI GATC 2 cut(s) 242, 454
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 4 cut(s) 170, 228, 326, 536
BstNI CCWGG 2 cut(s) 105, 392
BstNSI RCATGY 1 cut(s) 684
BstPI GGTNACC 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 103, 390
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 198
BstYI RGATCY 1 cut(s) 242
BstZI CGGCCG 1 cut(s) 205
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 6 cut(s) 103, 207, 249, 320, 345, 395
BtgI CCRYGG 2 cut(s) 223, 250
BtgZI GCGATG 1 cut(s) 707
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 4 cut(s) 142, 304, 532, 631
CfoI GCGC 2 cut(s) 122, 263
Cfr10I RCCGGY 6 cut(s) 122, 140, 302, 409, 440, 566
Cfr13I GGNCC 2 cut(s) 201, 344
Csp6I GTAC 1 cut(s) 556
CviAII CATG 2 cut(s) 397, 681
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 244, 456
DpnII GATC 2 cut(s) 242, 454
EaeI YGGCCR 5 cut(s) 101, 205, 247, 318, 393
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 3 cut(s) 23, 29, 186
EarI CTCTTC 3 cut(s) 23, 29, 186
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 201
Eco52I CGGCCG 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 103, 390
EcoT14I CCWWGG 1 cut(s) 687
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 2 cut(s) 400, 684
FaiI YATR 6 cut(s) 363, 387, 398, 407, 651, 682
FatI CATG 2 cut(s) 396, 680
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 229, 277
Fsp4HI GCNGC 2 cut(s) 229, 277
FspBI CTAG 1 cut(s) 353
GlaI GCGC 2 cut(s) 121, 262
GluI GCNGC 2 cut(s) 229, 277
GsaI CCCAGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 6 cut(s) 103, 207, 249, 320, 345, 395
HhaI GCGC 2 cut(s) 122, 263
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 2 cut(s) 400, 684
Hin6I GCGC 2 cut(s) 120, 261
HinP1I GCGC 2 cut(s) 120, 261
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 2 cut(s) 155, 639
HphI GGTGA 3 cut(s) 320, 540, 697
Hpy166II GTNNAC 3 cut(s) 311, 379, 482
Hpy8I GTNNAC 3 cut(s) 311, 379, 482
Hpy99I CGWCG 3 cut(s) 380, 383, 662
HpyAV CCTTC 3 cut(s) 44, 244, 550
HpyCH4III ACNGT 6 cut(s) 67, 299, 383, 555, 560, 588
HpyCH4IV ACGT 3 cut(s) 366, 496, 508
HpyCH4V TGCA 5 cut(s) 87, 231, 294, 564, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 228, 326, 536
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 3 cut(s) 366, 496, 508
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 2 cut(s) 400, 684
HspAI GCGC 2 cut(s) 120, 261
KroI GCCGGC 2 cut(s) 140, 302
KroNI GCCGGC 2 cut(s) 142, 304
Kzo9I GATC 2 cut(s) 242, 454
Lsp1109I GCAGC 1 cut(s) 215
MaeI CTAG 1 cut(s) 353
MaeII ACGT 3 cut(s) 366, 496, 508
MaeIII GTNAC 5 cut(s) 254, 492, 497, 578, 703
MalI GATC 2 cut(s) 244, 456
MboI GATC 2 cut(s) 242, 454
MboII GAAGA 7 cut(s) 10, 16, 29, 32, 64, 173, 610
MflI RGATCY 1 cut(s) 242
MlsI TGGCCA 2 cut(s) 103, 395
MluCI AATT 1 cut(s) 544
MluNI TGGCCA 2 cut(s) 103, 395
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 5 cut(s) 26, 32, 324, 383, 726
Mox20I TGGCCA 2 cut(s) 103, 395
MreI CGCCGGCG 1 cut(s) 140
MroNI GCCGGC 2 cut(s) 140, 302
MscI TGGCCA 2 cut(s) 103, 395
MseI TTAA 3 cut(s) 153, 414, 730
Msp20I TGGCCA 2 cut(s) 103, 395
MspR9I CCNGG 2 cut(s) 105, 392
MvaI CCWGG 2 cut(s) 105, 392
MwoI GCNNNNNNNGC 4 cut(s) 170, 228, 326, 536
NaeI GCCGGC 2 cut(s) 142, 304
NdeII GATC 2 cut(s) 242, 454
NgoMIV GCCGGC 2 cut(s) 140, 302
NlaIII CATG 2 cut(s) 400, 684
NlaIV GGNNCC 1 cut(s) 301
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 3 cut(s) 254, 492, 703
NspI RCATGY 1 cut(s) 684
PciI ACATGT 1 cut(s) 680
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PdiI GCCGGC 2 cut(s) 142, 304
PkrI GCNGC 2 cut(s) 230, 278
Ppu21I YACGTR 1 cut(s) 497
PscI ACATGT 1 cut(s) 680
PsiI TTATAA 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 103, 390
PspEI GGTNACC 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 2 cut(s) 103, 390
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 201, 344
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SalI GTCGAC 1 cut(s) 377
SaqAI TTAA 3 cut(s) 153, 414, 730
SatI GCNGC 2 cut(s) 229, 277
Sau3AI GATC 2 cut(s) 242, 454
Sau96I GGNCC 2 cut(s) 201, 344
ScaI AGTACT 1 cut(s) 557
ScrFI CCNGG 2 cut(s) 105, 392
SgrAI CRCCGGYG 1 cut(s) 140
SgrDI CGTCGACG 1 cut(s) 377
SinI GGWCC 1 cut(s) 201
Sse9I AATT 1 cut(s) 544
SsiI CCGC 4 cut(s) 144, 276, 279, 306
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 103, 390
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 6 cut(s) 67, 299, 383, 555, 560, 588
TaiI ACGT 3 cut(s) 369, 499, 511
TaqI TCGA 3 cut(s) 237, 378, 401
TasI AATT 1 cut(s) 544
TatI WGTACW 1 cut(s) 555
TauI GCSGC 1 cut(s) 279
Tru1I TTAA 3 cut(s) 153, 414, 730
Tru9I TTAA 3 cut(s) 153, 414, 730
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 3 cut(s) 254, 492, 703
TseI GCWGC 1 cut(s) 228
Tsp45I GTSAC 3 cut(s) 254, 492, 703
TspRI CASTG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 201
XceI RCATGY 1 cut(s) 684
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 1 cut(s) 353
ZraI GACGTC 1 cut(s) 367
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.