pycom06g20250

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013502
Physical Location & Seq
Reverse (-)
23360800 .. 23361802
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g20250.2

Sequence Viewer

Length: 753 bp
ATGGCTGCATTGCTGAAGACTAGCCTCCCCATCATGCTCTCCACCCTCCTATTTCTCCACGTTCTTGTTTCCGTCTCCTCCGCCACAACACTAACAATGTACAACAAGTGCACCCACCCAGTGTGGCCAGGCATCCAGCCGAGCGCCGGCCAGCCCCTCCTCGCTCGCGGCGGCTTCACCCTCCCACCCAACAAAGCCCACACCCTCCACCTCCCCCGACTCTGGTCCGGACGCTTCTGGGGTCGCCACGGCTGCGCCTTCGACGCCTCCGGCCGCGGCCGTTGTGCCACCGGAGACTGCGGCGGAAACCTCTTCTGCAGCGGCCTCGGCGGCACCCCACCCGCCACCCTAGCGGAAATCACCCTCGGAAACGACCAAGACTTCTACGACGTAAGCCTCGTCGATGGCTACAACCTTGCCATCTCCATCACCCCCTTTAAGGGCTCTGGAAAGTGCAGCTACGCCGGCTGCGTCAGCGACTTGAACATGATGTGCCCTGTGGGCCTCCAAGTCCGCTCCCACGACAACCGCAGAGTGGTGGCGTGCAAGAGCGCTTGCTCCGCTTTCAACTCGCCGAGGTACTGCTGCACCGGCAGCTTCGGCAGCCCTCAGTCGTGCAAGCCGACGGCGTACTCCAAGATCTTCAAGGCAGCGTGCCCCAAGGCTTACTCGTACGCTTACGACGACCCCACCAGCATCGCCACCTGCACCCGCGCGAACTACTTGGTCACCTTCTGCCCTCACCACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

251

Amino Acids

26.74

Weight (kDa)

9.01

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18250 AT1G18250
fragaria_vesca FvH4_5g17260
malus_domestica MD06G1231200.v1.1 MD13G1184600.v1.1
prunus_persica Prupe.5G232500_v2.0.a1
pyrus_communis pycom06g20250
rosa_chinensis RchiOBHm_Chr7g0178521
rosa_laevigata RLG00000005440
rosa_multiflora Rmu_sc0002421.1_g000003 Rmu_sc0016060.1_g000004
rosa_roxburghii Rroxscaffold_3G00274840
rosa_rugosa Rorug06G0417800
rosa_samantha Rh7AG016300 Rh7BG015800 Rh7CG016500 Rh7DG016400
rosa_wichuraiana Rw7G001290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 713
Acc36I ACCTGC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 332
AccBSI CCGCTC 1 cut(s) 516
AccII CGCG 4 cut(s) 168, 276, 714, 716
AccIII TCCGGA 1 cut(s) 227
AcoI YGGCCR 4 cut(s) 125, 148, 271, 277
AcuI CTGAAG 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 264
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 4 cut(s) 101, 581, 632, 674
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 5 cut(s) 146, 222, 439, 440, 535
AgsI TTSAA 3 cut(s) 484, 568, 646
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 2 cut(s) 459, 597
AluI AGCT 2 cut(s) 459, 597
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 79, 288
Alw44I GTGCAC 1 cut(s) 109
Aor13HI TCCGGA 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 6 cut(s) 125, 148, 271, 277, 322, 502
ApaLI GTGCAC 1 cut(s) 109
ApeKI GCWGC 9 cut(s) 5, 252, 318, 456, 468, 585, 594, 603, 650
AspLEI GCGC 4 cut(s) 146, 257, 554, 716
AspS9I GGNCC 2 cut(s) 225, 502
AsuHPI GGTGA 5 cut(s) 169, 352, 421, 721, 734
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 3 cut(s) 113, 497, 659
BalI TGGCCA 1 cut(s) 127
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 8 cut(s) 239, 330, 455, 468, 572, 606, 615, 662
BccI CCATC 4 cut(s) 38, 398, 428, 434
BceAI ACGGC 3 cut(s) 264, 265, 642
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 79, 288
BfaI CTAG 2 cut(s) 21, 350
BfmI CTRYAG 1 cut(s) 316
BfoI RGCGCY 2 cut(s) 147, 555
BfuAI ACCTGC 1 cut(s) 713
BglI GCCNNNNNGGC 2 cut(s) 330, 501
BglII AGATCT 1 cut(s) 639
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 225, 502
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 141, 705
BmuI ACTGGG 1 cut(s) 113
BoxI GACNNNNGTC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 6 cut(s) 247, 274, 325, 364, 575, 660
BsaWI WCCGGW 2 cut(s) 227, 290
Bsc4I CCNNNNNNNGG 5 cut(s) 146, 222, 439, 440, 535
Bse118I RCCGGY 3 cut(s) 146, 464, 590
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 8
BseAI TCCGGA 1 cut(s) 227
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 6 cut(s) 247, 274, 325, 364, 575, 660
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 5 cut(s) 146, 222, 439, 440, 535
BseMI GCAATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 2 cut(s) 67, 149
BseSI GKGCMC 3 cut(s) 113, 497, 659
BseX3I CGGCCG 2 cut(s) 271, 277
BseXI GCAGC 8 cut(s) 239, 330, 455, 468, 572, 606, 615, 662
BsgI GTGCAG 3 cut(s) 475, 571, 691
Bsh1236I CGCG 4 cut(s) 168, 276, 714, 716
Bsh1285I CGRYCG 2 cut(s) 274, 280
BshFI GGCC 6 cut(s) 127, 150, 273, 279, 324, 504
BshNI GGYRCC 1 cut(s) 332
BsiEI CGRYCG 2 cut(s) 274, 280
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 6 cut(s) 147, 228, 270, 291, 465, 591
BsiWI CGTACG 1 cut(s) 672
BslI CCNNNNNNNGG 5 cut(s) 146, 222, 439, 440, 535
BsmAI GTCTC 2 cut(s) 79, 288
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 6 cut(s) 127, 150, 273, 279, 324, 504
Bsp1286I GDGCHC 4 cut(s) 113, 446, 497, 659
Bsp13I TCCGGA 1 cut(s) 227
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 639
BspANI GGCC 6 cut(s) 127, 150, 273, 279, 324, 504
BspCNI CTCAG 1 cut(s) 622
BspEI TCCGGA 1 cut(s) 227
BspFNI CGCG 4 cut(s) 168, 276, 714, 716
BspLI GGNNCC 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 320
BspMI ACCTGC 1 cut(s) 713
BspT107I GGYRCC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 8
BsrFI RCCGGY 3 cut(s) 146, 464, 590
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 3 cut(s) 146, 464, 590
BssECI CCNNGG 6 cut(s) 247, 274, 325, 364, 575, 660
BssMI GATC 1 cut(s) 639
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 8 cut(s) 148, 152, 166, 466, 544, 556, 620, 655
BstDEI CTNAG 1 cut(s) 609
BstDSI CCRYGG 2 cut(s) 247, 274
BstEII GGTNACC 1 cut(s) 727
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 4 cut(s) 168, 276, 714, 716
BstH2I RGCGCY 2 cut(s) 147, 555
BstHHI GCGC 4 cut(s) 146, 257, 554, 716
BstKTI GATC 1 cut(s) 642
BstMAI GTCTC 2 cut(s) 79, 288
BstMBI GATC 1 cut(s) 639
BstMCI CGRYCG 2 cut(s) 274, 280
BstNI CCWGG 1 cut(s) 129
BstPAI GACNNNNGTC 1 cut(s) 223
BstPI GGTNACC 1 cut(s) 727
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 316
BstSLI GKGCMC 3 cut(s) 113, 497, 659
BstUI CGCG 4 cut(s) 168, 276, 714, 716
BstV1I GCAGC 8 cut(s) 239, 330, 455, 468, 572, 606, 615, 662
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 639
BstYI RGATCY 1 cut(s) 639
BstZI CGGCCG 2 cut(s) 271, 277
BsuRI GGCC 6 cut(s) 127, 150, 273, 279, 324, 504
BtgI CCRYGG 2 cut(s) 247, 274
BtgZI GCGATG 1 cut(s) 682
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 126
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 8 cut(s) 148, 152, 166, 466, 544, 556, 620, 655
CfoI GCGC 4 cut(s) 146, 257, 554, 716
Cfr10I RCCGGY 3 cut(s) 146, 464, 590
Cfr13I GGNCC 2 cut(s) 225, 502
Cfr42I CCGCGG 1 cut(s) 277
CseI GACGC 3 cut(s) 240, 272, 460
Csp6I GTAC 4 cut(s) 100, 580, 631, 673
CviAII CATG 2 cut(s) 34, 487
CviQI GTAC 4 cut(s) 100, 580, 631, 673
DdeI CTNAG 1 cut(s) 609
DpnI GATC 1 cut(s) 641
DpnII GATC 1 cut(s) 639
DraIII CACNNNGTG 1 cut(s) 121
EaeI YGGCCR 4 cut(s) 125, 148, 271, 277
EagI CGGCCG 2 cut(s) 271, 277
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 2 cut(s) 70, 318
EclXI CGGCCG 2 cut(s) 271, 277
Eco130I CCWWGG 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 225
Eco47III AGCGCT 1 cut(s) 553
Eco52I CGGCCG 2 cut(s) 271, 277
Eco57I CTGAAG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 727
EcoO65I GGTNACC 1 cut(s) 727
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 660
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 2 cut(s) 37, 490
FaiI YATR 2 cut(s) 35, 488
FatI CATG 2 cut(s) 33, 486
FauI CCCGC 2 cut(s) 349, 719
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 446
FspBI CTAG 2 cut(s) 21, 350
GlaI GCGC 4 cut(s) 145, 256, 553, 715
HaeII RGCGCY 2 cut(s) 147, 555
HaeIII GGCC 6 cut(s) 127, 150, 273, 279, 324, 504
HapII CCGG 6 cut(s) 147, 228, 270, 291, 465, 591
HgaI GACGC 3 cut(s) 240, 272, 460
HhaI GCGC 4 cut(s) 146, 257, 554, 716
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 2 cut(s) 37, 490
Hin6I GCGC 4 cut(s) 144, 255, 552, 714
HinP1I GCGC 4 cut(s) 144, 255, 552, 714
HinfI GANTC 1 cut(s) 219
HpaII CCGG 6 cut(s) 147, 228, 270, 291, 465, 591
HphI GGTGA 5 cut(s) 169, 352, 421, 721, 734
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 2 cut(s) 228, 447
Hpy8I GTNNAC 1 cut(s) 111
Hpy99I CGWCG 5 cut(s) 266, 392, 404, 628, 686
HpyAV CCTTC 2 cut(s) 268, 742
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 2 cut(s) 60, 390
HpyCH4V TGCA 8 cut(s) 8, 111, 318, 456, 546, 588, 618, 708
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 2 cut(s) 60, 390
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 2 cut(s) 37, 490
HspAI GCGC 4 cut(s) 144, 255, 552, 714
Kpn2I TCCGGA 1 cut(s) 227
KroI GCCGGC 2 cut(s) 146, 464
KroNI GCCGGC 2 cut(s) 148, 466
KspI CCGCGG 1 cut(s) 277
Kzo9I GATC 1 cut(s) 639
LmnI GCTCC 2 cut(s) 521, 563
Lsp1109I GCAGC 8 cut(s) 239, 330, 455, 468, 572, 606, 615, 662
LweI GCATC 2 cut(s) 141, 705
MaeI CTAG 2 cut(s) 21, 350
MaeII ACGT 2 cut(s) 60, 390
MaeIII GTNAC 1 cut(s) 727
MalI GATC 1 cut(s) 641
MbiI CCGCTC 1 cut(s) 516
MboI GATC 1 cut(s) 639
MboII GAAGA 3 cut(s) 28, 304, 634
MflI RGATCY 1 cut(s) 639
MhlI GDGCHC 4 cut(s) 113, 446, 497, 659
MlsI TGGCCA 1 cut(s) 127
MluNI TGGCCA 1 cut(s) 127
MlyI GAGTC 1 cut(s) 213
Mox20I TGGCCA 1 cut(s) 127
MroI TCCGGA 1 cut(s) 227
MroNI GCCGGC 2 cut(s) 146, 464
MscI TGGCCA 1 cut(s) 127
MseI TTAA 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 127
MspA1I CMGCKG 2 cut(s) 276, 321
MspI CCGG 6 cut(s) 147, 228, 270, 291, 465, 591
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MvnI CGCG 4 cut(s) 168, 276, 714, 716
NaeI GCCGGC 2 cut(s) 148, 466
NdeII GATC 1 cut(s) 639
NgoMIV GCCGGC 2 cut(s) 146, 464
NlaIII CATG 2 cut(s) 37, 490
NlaIV GGNNCC 1 cut(s) 334
NmeAIII GCCGAG 3 cut(s) 165, 306, 600
NmuCI GTSAC 1 cut(s) 727
PaqCI CACCTGC 1 cut(s) 713
PcsI WCGNNNNNNNCGW 4 cut(s) 396, 468, 620, 681
PdiI GCCGGC 2 cut(s) 148, 466
Pfl23II CGTACG 1 cut(s) 672
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PshAI GACNNNNGTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 127
PspEI GGTNACC 1 cut(s) 727
PspGI CCWGG 1 cut(s) 127
PspLI CGTACG 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 2 cut(s) 225, 502
PstI CTGCAG 1 cut(s) 320
PsuI RGATCY 1 cut(s) 639
RsaI GTAC 4 cut(s) 101, 581, 632, 674
RsaNI GTAC 4 cut(s) 100, 580, 631, 673
SacII CCGCGG 1 cut(s) 277
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 1 cut(s) 639
Sau96I GGNCC 2 cut(s) 225, 502
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 4 cut(s) 113, 446, 497, 659
SfaNI GCATC 2 cut(s) 141, 705
SfcI CTRYAG 1 cut(s) 316
Sfr303I CCGCGG 1 cut(s) 277
SgrBI CCGCGG 1 cut(s) 277
SinI GGWCC 1 cut(s) 225
SspMI CTAG 2 cut(s) 21, 350
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 2 cut(s) 63, 393
TaqI TCGA 2 cut(s) 261, 402
TatI WGTACW 1 cut(s) 99
TauI GCSGC 7 cut(s) 171, 174, 276, 279, 303, 324, 333
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 9 cut(s) 5, 252, 318, 456, 468, 585, 594, 603, 650
Tsp45I GTSAC 1 cut(s) 727
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 126
VneI GTGCAC 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 225
XspI CTAG 2 cut(s) 21, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.