FvH4_5g17260

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013502
Physical Location & Seq
Reverse (-)
9856748 .. 9858249
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17260.t1

Sequence Viewer

Length: 753 bp
ATGCTGAGGCCTAGCCTCACTCTCCTCCTGCTCTCCGCTCTCCTGTTTGCCCACATTCTTGTCGATGATGTCTCGGCCACCACAATGACCTTCGTCAACAAATGCTCCCACCCAGTCTGGCCGGGAATCCAACCCAGCGCCGGCCAGCCCATCCTCGCCAAAGGCGGCTTCACTCTCCCACCCAACAAGGCCACCACCCTCCACCTCCCTCCTCTCTGGTCCGGCCGCTTCTGGGGCCGCCACGGCTGCGCCTTCGACGCCTCCGGCCGCGGCCGCTGCGCCACCGGCGACTGCGGCGGCAACCTCTACTGCTCCGGCCTCGGCGGCACCCCTCCCGCCACCCTCGCCGAGATCACCCTCGGCCACGAGCAGGACTTCTATGACGTCAGCCTGGTCGATGGGTACAACCTCGCCATCTCCATCACACCCTACCAGGGCTCCGGCAAGTGCAGCTACGCCGGGTGCGTCAGCGACCTGAATATGATGTGTCCGGTGGGGCTGCAGGTGAGGTCACATGATAACCGGCGCGTGGTGGCGTGTAAAAGCGCGTGCTCTGCGTTTAACTCGCCGAGGTATTGCTGTACCGGAAGCTACGGGAGCCCGCAGTCGTGTAAGCCAACGGCGTATTCCCGGATATTCAAGACGGCGTGCCCGAGAGCTTATTCTTATGCTTATGATGATCCCACCAGCATTGCTACTTGCACCAGGGGAAACTATGTGGTCACCTTCTGCCCTCGCCATGGCCACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

251

Amino Acids

26.79

Weight (kDa)

8.77

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 33 - 245 3.8e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18250 AT1G18250
fragaria_vesca FvH4_5g17260
malus_domestica MD06G1231200.v1.1 MD13G1184600.v1.1
prunus_persica Prupe.5G232500_v2.0.a1
pyrus_communis pycom06g20250
rosa_chinensis RchiOBHm_Chr7g0178521
rosa_laevigata RLG00000005440
rosa_multiflora Rmu_sc0002421.1_g000003 Rmu_sc0016060.1_g000004
rosa_roxburghii Rroxscaffold_3G00274840
rosa_rugosa Rorug06G0417800
rosa_samantha Rh7AG016300 Rh7BG015800 Rh7CG016500 Rh7DG016400
rosa_wichuraiana Rw7G001290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 493
AatII GACGTC 1 cut(s) 387
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 38
AccII CGCG 3 cut(s) 270, 528, 548
AclWI GGATC 1 cut(s) 674
AcoI YGGCCR 8 cut(s) 75, 119, 142, 223, 265, 271, 361, 742
AcyI GRCGYC 2 cut(s) 258, 384
AfaI GTAC 2 cut(s) 404, 583
AfiI CCNNNNNNNGG 6 cut(s) 140, 232, 370, 434, 529, 740
AgsI TTSAA 1 cut(s) 640
AjnI CCWGG 3 cut(s) 390, 432, 704
AjuI GAANNNNNNNTTGG 4 cut(s) 152, 184, 610, 642
AluBI AGCT 3 cut(s) 453, 591, 659
AluI AGCT 3 cut(s) 453, 591, 659
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 674
Ama87I CYCGRG 1 cut(s) 652
ApeKI GCWGC 4 cut(s) 246, 276, 450, 499
AspLEI GCGC 5 cut(s) 140, 251, 281, 528, 548
AspS9I GGNCC 2 cut(s) 219, 235
AsuC2I CCSGG 3 cut(s) 123, 460, 631
AsuHPI GGTGA 3 cut(s) 346, 517, 715
AvaI CYCGRG 1 cut(s) 652
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 653
BalI TGGCCA 1 cut(s) 744
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 2 cut(s) 440, 602
BauI CACGAG 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 554
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 4 cut(s) 233, 263, 462, 486
BccI CCATC 4 cut(s) 158, 392, 422, 428
BceAI ACGGC 3 cut(s) 259, 636, 660
BciT130I CCWGG 3 cut(s) 392, 434, 706
BcnI CCSGG 3 cut(s) 123, 460, 631
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 500
BfoI RGCGCY 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 493
BglI GCCNNNNNGGC 2 cut(s) 243, 324
Bme1390I CCNGG 6 cut(s) 123, 392, 434, 460, 631, 706
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 652
BmgT120I GGNCC 2 cut(s) 219, 235
BmiI GGNNCC 4 cut(s) 236, 328, 439, 599
BmrFI CCNGG 6 cut(s) 123, 392, 434, 460, 631, 706
BmrI ACTGGG 1 cut(s) 107
BmuI ACTGGG 1 cut(s) 107
BoxI GACNNNNGTC 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 5
BpuMI CCSGG 3 cut(s) 123, 460, 631
BsaHI GRCGYC 2 cut(s) 258, 384
BsaJI CCNNGG 8 cut(s) 241, 268, 319, 358, 433, 569, 705, 739
BsaWI WCCGGW 2 cut(s) 490, 584
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 422, 452
Bsc4I CCNNNNNNNGG 6 cut(s) 140, 232, 370, 434, 529, 740
Bse118I RCCGGY 3 cut(s) 140, 284, 522
Bse1I ACTGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 3 cut(s) 392, 434, 706
BseDI CCNNGG 8 cut(s) 241, 268, 319, 358, 433, 569, 705, 739
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 6 cut(s) 140, 232, 370, 434, 529, 740
BseMI GCAATG 1 cut(s) 690
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 14, 201
BseSI GKGCMC 1 cut(s) 653
BseX3I CGGCCG 3 cut(s) 223, 265, 271
BseXI GCAGC 4 cut(s) 233, 263, 462, 486
BseYI CCCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 469
Bsh1236I CGCG 3 cut(s) 270, 528, 548
Bsh1285I CGRYCG 3 cut(s) 226, 268, 274
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 3 cut(s) 226, 268, 274
BsiHKAI GWGCWC 1 cut(s) 554
BsiHKCI CYCGRG 1 cut(s) 652
BslI CCNNNNNNNGG 6 cut(s) 140, 232, 370, 434, 529, 740
BsmAI GTCTC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 652
Bsp1286I GDGCHC 4 cut(s) 440, 554, 602, 653
Bsp143I GATC 2 cut(s) 351, 679
Bsp19I CCATGG 1 cut(s) 739
BspFNI CGCG 3 cut(s) 270, 528, 548
BspLI GGNNCC 4 cut(s) 236, 328, 439, 599
BspMAI CTGCAG 1 cut(s) 504
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 1 cut(s) 674
BspT107I GGYRCC 1 cut(s) 326
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 690
BsrFI RCCGGY 3 cut(s) 140, 284, 522
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 3 cut(s) 140, 284, 522
BssECI CCNNGG 8 cut(s) 241, 268, 319, 358, 433, 569, 705, 739
BssMI GATC 2 cut(s) 351, 679
BssNI GRCGYC 2 cut(s) 258, 384
BssSI CACGAG 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 739
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 3 cut(s) 392, 434, 706
Bst4CI ACNGT 1 cut(s) 749
BstACI GRCGYC 2 cut(s) 258, 384
BstC8I GCNNGC 5 cut(s) 142, 146, 550, 602, 649
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 3 cut(s) 241, 268, 739
BstEII GGTNACC 1 cut(s) 721
BstF5I GGATG 1 cut(s) 150
BstFNI CGCG 3 cut(s) 270, 528, 548
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 5 cut(s) 140, 251, 281, 528, 548
BstKTI GATC 2 cut(s) 354, 682
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 2 cut(s) 351, 679
BstMCI CGRYCG 3 cut(s) 226, 268, 274
BstNI CCWGG 3 cut(s) 392, 434, 706
BstPAI GACNNNNGTC 1 cut(s) 92
BstPI GGTNACC 1 cut(s) 721
BstSCI CCNGG 6 cut(s) 121, 390, 432, 458, 629, 704
BstSFI CTRYAG 1 cut(s) 500
BstSLI GKGCMC 1 cut(s) 653
BstUI CGCG 3 cut(s) 270, 528, 548
BstV1I GCAGC 4 cut(s) 233, 263, 462, 486
BstZI CGGCCG 3 cut(s) 223, 265, 271
BtgI CCRYGG 3 cut(s) 241, 268, 739
BtsCI GGATG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 5 cut(s) 142, 146, 550, 602, 649
CciNI GCGGCCGC 1 cut(s) 271
CfoI GCGC 5 cut(s) 140, 251, 281, 528, 548
Cfr10I RCCGGY 3 cut(s) 140, 284, 522
Cfr13I GGNCC 2 cut(s) 219, 235
Cfr42I CCGCGG 1 cut(s) 271
CseI GACGC 2 cut(s) 266, 454
Csp6I GTAC 2 cut(s) 403, 582
CspCI CAANNNNNGTGG 2 cut(s) 673, 708
CviAII CATG 2 cut(s) 515, 740
CviQI GTAC 2 cut(s) 403, 582
DdeI CTNAG 1 cut(s) 5
DpnI GATC 2 cut(s) 353, 681
DpnII GATC 2 cut(s) 351, 679
EaeI YGGCCR 8 cut(s) 75, 119, 142, 223, 265, 271, 361, 742
EagI CGGCCG 3 cut(s) 223, 265, 271
EclXI CGGCCG 3 cut(s) 223, 265, 271
Eco130I CCWWGG 1 cut(s) 739
Eco147I AGGCCT 1 cut(s) 10
Eco24I GRGCYC 2 cut(s) 440, 602
Eco47I GGWCC 1 cut(s) 219
Eco52I CGGCCG 3 cut(s) 223, 265, 271
Eco88I CYCGRG 1 cut(s) 652
Eco91I GGTNACC 1 cut(s) 721
EcoO65I GGTNACC 1 cut(s) 721
EcoRII CCWGG 3 cut(s) 390, 432, 704
EcoT14I CCWWGG 1 cut(s) 739
EcoT38I GRGCYC 2 cut(s) 440, 602
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 2 cut(s) 518, 743
FaiI YATR 7 cut(s) 381, 482, 516, 669, 675, 717, 741
FatI CATG 2 cut(s) 514, 739
FauI CCCGC 2 cut(s) 343, 609
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 2 cut(s) 440, 602
FspBI CTAG 1 cut(s) 12
GlaI GCGC 5 cut(s) 139, 250, 280, 527, 547
GsaI CCCAGC 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 141
HgaI GACGC 2 cut(s) 266, 454
HhaI GCGC 5 cut(s) 140, 251, 281, 528, 548
Hin1I GRCGYC 2 cut(s) 258, 384
Hin1II CATG 2 cut(s) 518, 743
Hin6I GCGC 5 cut(s) 138, 249, 279, 526, 546
HinP1I GCGC 5 cut(s) 138, 249, 279, 526, 546
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 1 cut(s) 126
HphI GGTGA 3 cut(s) 346, 517, 715
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 640
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 3 cut(s) 100, 262, 736
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 3 cut(s) 450, 502, 702
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 2 cut(s) 258, 384
Hsp92II CATG 2 cut(s) 518, 743
HspAI GCGC 5 cut(s) 138, 249, 279, 526, 546
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
KspI CCGCGG 1 cut(s) 271
Kzo9I GATC 2 cut(s) 351, 679
LmnI GCTCC 4 cut(s) 110, 317, 443, 597
Lsp1109I GCAGC 4 cut(s) 233, 263, 462, 486
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 510, 721
MalI GATC 2 cut(s) 353, 681
MbiI CCGCTC 1 cut(s) 38
MboI GATC 2 cut(s) 351, 679
MhlI GDGCHC 4 cut(s) 440, 554, 602, 653
MlsI TGGCCA 1 cut(s) 744
MluNI TGGCCA 1 cut(s) 744
MmeI TCCRAC 1 cut(s) 154
Mox20I TGGCCA 1 cut(s) 744
MroNI GCCGGC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 744
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 744
MspA1I CMGCKG 2 cut(s) 270, 276
MspR9I CCNGG 6 cut(s) 123, 392, 434, 460, 631, 706
MvaI CCWGG 3 cut(s) 392, 434, 706
MvnI CGCG 3 cut(s) 270, 528, 548
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 3 cut(s) 123, 460, 631
NcoI CCATGG 1 cut(s) 739
NdeII GATC 2 cut(s) 351, 679
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 2 cut(s) 518, 743
NlaIV GGNNCC 4 cut(s) 236, 328, 439, 599
NmeAIII GCCGAG 5 cut(s) 53, 300, 339, 373, 594
NmuCI GTSAC 2 cut(s) 510, 721
NotI GCGGCCGC 1 cut(s) 271
PaqCI CACCTGC 1 cut(s) 493
PceI AGGCCT 1 cut(s) 10
PcsI WCGNNNNNNNCGW 2 cut(s) 462, 650
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 629
PshAI GACNNNNGTC 1 cut(s) 92
Psp6I CCWGG 3 cut(s) 390, 432, 704
PspEI GGTNACC 1 cut(s) 721
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 3 cut(s) 390, 432, 704
PspN4I GGNNCC 4 cut(s) 236, 328, 439, 599
PspPI GGNCC 2 cut(s) 219, 235
PstI CTGCAG 1 cut(s) 504
RsaI GTAC 2 cut(s) 404, 583
RsaNI GTAC 2 cut(s) 403, 582
RseI CAYNNNNRTG 1 cut(s) 83
SacII CCGCGG 1 cut(s) 271
SaqAI TTAA 1 cut(s) 561
Sau3AI GATC 2 cut(s) 351, 679
Sau96I GGNCC 2 cut(s) 219, 235
ScrFI CCNGG 6 cut(s) 123, 392, 434, 460, 631, 706
SduI GDGCHC 4 cut(s) 440, 554, 602, 653
SfcI CTRYAG 1 cut(s) 500
Sfr303I CCGCGG 1 cut(s) 271
SgrAI CRCCGGYG 1 cut(s) 284
SgrBI CCGCGG 1 cut(s) 271
SinI GGWCC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 6 cut(s) 121, 390, 432, 458, 629, 704
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 1 cut(s) 387
TaqI TCGA 3 cut(s) 63, 255, 396
TauI GCSGC 9 cut(s) 168, 228, 240, 270, 273, 276, 297, 300, 327
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TseFI GTSAC 2 cut(s) 510, 721
TseI GCWGC 4 cut(s) 246, 276, 450, 499
Tsp45I GTSAC 2 cut(s) 510, 721
VpaK11BI GGWCC 1 cut(s) 219
XspI CTAG 1 cut(s) 12
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.