Prupe.5G232500_v2.0.a1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013502
Physical Location & Seq
Reverse (-)
17693032 .. 17694488
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G232500.1

Sequence Viewer

Length: 753 bp
ATGGCTGCTTTACTGAGGTGTAACCTCACTCTCATGCTCTCCACCCTCCTCTTTCTCCACGTCCTAGTTGAAGTCTCGTCAGCCACCACAATAACAATGCACAACAAGTGCAGCCACCCAGTGTGGCCAGGCATTCAGCCCAGCGCAGGCCAGCCCATCCTAGCCAGAGGAGGCTTCACCCTCCCCCCCAACAAGGCCTACACTCTCCGCCTCCCGCCTCTCTGGTCCGGTCGCCTCTGGGGTCGCCATGGCTGTGCCTTCGACTCCTCAGGCCGCGGCCGCTGCGCCACCGGTGACTGCGGCGGCAACCTCTTCTGTAGCGGCCTCGGCGGGACCCCACCAGCCACGCTTGCCGAGATCACCCTTGGCAACGAGCAAGACTTCTACGACGTGAGCCTCGTCGACGGGTACAACCTGGCCATCTCCATTCAGCCGTTCAAAGGCTCCGGCAAGTGCAGCTACGCCGGGTGCATCAGCGACCTGAACATGATGTGCCCTGTGGGACTTCAAGTGCGGTCTCATGACAACCGGAGAGTGGTGGCTTGCAAAAGCGCTTGCTCTGCCTTCAACTCGCCCAGGTATTGCTGCACTGGCAGCTTTGGGAGCCCTCAGTCTTGCAAGCCCACGGCTTATTCCAAGATCTTCAAAGCTGCATGTCCAAAAGCTTATTCTTATGCTTATGATGATCCCACCAGCATTGCCACTTGCACTCGCGGCAACTACGTGGTCACCTTCTGCCCTCACCACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

251

Amino Acids

26.8

Weight (kDa)

8.91

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18250 AT1G18250
fragaria_vesca FvH4_5g17260
malus_domestica MD06G1231200.v1.1 MD13G1184600.v1.1
prunus_persica Prupe.5G232500_v2.0.a1
pyrus_communis pycom06g20250
rosa_chinensis RchiOBHm_Chr7g0178521
rosa_laevigata RLG00000005440
rosa_multiflora Rmu_sc0002421.1_g000003 Rmu_sc0016060.1_g000004
rosa_roxburghii Rroxscaffold_3G00274840
rosa_rugosa Rorug06G0417800
rosa_samantha Rh7AG016300 Rh7BG015800 Rh7CG016500 Rh7DG016400
rosa_wichuraiana Rw7G001290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 402
AccII CGCG 2 cut(s) 276, 714
AclWI GGATC 1 cut(s) 680
AcoI YGGCCR 3 cut(s) 125, 277, 417
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 1 cut(s) 410
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 4 cut(s) 146, 193, 440, 535
AgeI ACCGGT 1 cut(s) 290
AgsI TTSAA 5 cut(s) 71, 439, 509, 568, 646
AjiI CACGTC 2 cut(s) 61, 391
AjnI CCWGG 3 cut(s) 127, 414, 575
AjuI GAANNNNNNNTTGG 2 cut(s) 652, 684
AluBI AGCT 4 cut(s) 459, 597, 650, 665
AluI AGCT 4 cut(s) 459, 597, 650, 665
Alw26I GTCTC 2 cut(s) 79, 522
AlwI GGATC 1 cut(s) 680
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 7 cut(s) 125, 148, 195, 271, 277, 322, 417
ApeKI GCWGC 7 cut(s) 5, 111, 282, 456, 585, 594, 650
AsiGI ACCGGT 1 cut(s) 290
AspLEI GCGC 3 cut(s) 146, 287, 554
AspS9I GGNCC 2 cut(s) 225, 333
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 5 cut(s) 169, 305, 352, 721, 734
AvaII GGWCC 2 cut(s) 225, 333
AxyI CCTNAGG 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 497
BalI TGGCCA 2 cut(s) 127, 419
BanII GRGCYC 1 cut(s) 608
BbvI GCAGC 6 cut(s) 123, 269, 468, 572, 606, 637
BccI CCATC 2 cut(s) 164, 428
BceAI ACGGC 2 cut(s) 418, 642
BciT130I CCWGG 3 cut(s) 129, 416, 577
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 79, 522
BfaI CTAG 2 cut(s) 65, 161
BfmI CTRYAG 1 cut(s) 316
BfoI RGCGCY 1 cut(s) 555
BglII AGATCT 1 cut(s) 639
Bme1390I CCNGG 4 cut(s) 129, 416, 466, 577
Bme18I GGWCC 2 cut(s) 225, 333
BmgBI CACGTC 2 cut(s) 61, 391
BmgT120I GGNCC 2 cut(s) 225, 333
BmiI GGNNCC 4 cut(s) 334, 335, 445, 605
BmrFI CCNGG 4 cut(s) 129, 416, 466, 577
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 480
BmuI ACTGGG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 466
BsaAI YACGTR 1 cut(s) 724
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 6 cut(s) 247, 274, 325, 364, 575, 624
BsaWI WCCGGW 3 cut(s) 227, 290, 528
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 193, 440, 535
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 119, 595
Bse21I CCTNAGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 3 cut(s) 129, 416, 577
BseDI CCNNGG 6 cut(s) 247, 274, 325, 364, 575, 624
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 4 cut(s) 146, 193, 440, 535
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 3 cut(s) 5, 282, 623
BseNI ACTGG 2 cut(s) 119, 595
BseRI GAGGAG 3 cut(s) 38, 183, 256
BseSI GKGCMC 1 cut(s) 497
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 6 cut(s) 123, 269, 468, 572, 606, 637
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 3 cut(s) 130, 475, 571
Bsh1236I CGCG 2 cut(s) 276, 714
Bsh1285I CGRYCG 2 cut(s) 232, 280
BshFI GGCC 7 cut(s) 127, 150, 197, 273, 279, 324, 419
BshTI ACCGGT 1 cut(s) 290
BsiEI CGRYCG 2 cut(s) 232, 280
BsiSI CCGG 5 cut(s) 228, 291, 447, 465, 529
BslFI GGGAC 2 cut(s) 346, 516
BslI CCNNNNNNNGG 4 cut(s) 146, 193, 440, 535
BsmAI GTCTC 2 cut(s) 79, 522
BsmFI GGGAC 2 cut(s) 346, 516
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 7 cut(s) 127, 150, 197, 273, 279, 324, 419
Bso31I GGTCTC 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 497, 608
Bsp143I GATC 3 cut(s) 357, 639, 685
Bsp19I CCATGG 1 cut(s) 247
BspANI GGCC 7 cut(s) 127, 150, 197, 273, 279, 324, 419
BspCNI CTCAG 3 cut(s) 6, 281, 622
BspFNI CGCG 2 cut(s) 276, 714
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 334, 335, 445, 605
BspPI GGATC 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 2 cut(s) 119, 595
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 6 cut(s) 247, 274, 325, 364, 575, 624
BssMI GATC 3 cut(s) 357, 639, 685
BssT1I CCWWGG 2 cut(s) 247, 364
Bst2UI CCWGG 3 cut(s) 129, 416, 577
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 724
BstC8I GCNNGC 6 cut(s) 148, 152, 351, 544, 556, 620
BstDEI CTNAG 3 cut(s) 14, 268, 609
BstDSI CCRYGG 3 cut(s) 247, 274, 624
BstEII GGTNACC 1 cut(s) 727
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 2 cut(s) 276, 714
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 3 cut(s) 146, 287, 554
BstKTI GATC 3 cut(s) 360, 642, 688
BstMAI GTCTC 2 cut(s) 79, 522
BstMBI GATC 3 cut(s) 357, 639, 685
BstMCI CGRYCG 2 cut(s) 232, 280
BstNI CCWGG 3 cut(s) 129, 416, 577
BstNSI RCATGY 1 cut(s) 657
BstPI GGTNACC 1 cut(s) 727
BstSCI CCNGG 4 cut(s) 127, 414, 464, 575
BstSFI CTRYAG 1 cut(s) 316
BstSLI GKGCMC 1 cut(s) 497
BstUI CGCG 2 cut(s) 276, 714
BstV1I GCAGC 6 cut(s) 123, 269, 468, 572, 606, 637
BstX2I RGATCY 1 cut(s) 639
BstYI RGATCY 1 cut(s) 639
BstZI CGGCCG 1 cut(s) 277
Bsu36I CCTNAGG 1 cut(s) 268
BsuRI GGCC 7 cut(s) 127, 150, 197, 273, 279, 324, 419
BtgI CCRYGG 3 cut(s) 247, 274, 624
BtrI CACGTC 2 cut(s) 61, 391
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 126, 588
Cac8I GCNNGC 6 cut(s) 148, 152, 351, 544, 556, 620
CciI TCATGA 1 cut(s) 520
CciNI GCGGCCGC 1 cut(s) 277
CfoI GCGC 3 cut(s) 146, 287, 554
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 225, 333
Cfr42I CCGCGG 1 cut(s) 277
Csp6I GTAC 1 cut(s) 409
CspAI ACCGGT 1 cut(s) 290
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 5 cut(s) 34, 248, 487, 521, 654
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 14, 268, 609
DpnI GATC 3 cut(s) 359, 641, 687
DpnII GATC 3 cut(s) 357, 639, 685
DraIII CACNNNGTG 1 cut(s) 121
EaeI YGGCCR 3 cut(s) 125, 277, 417
EagI CGGCCG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 277
Eco130I CCWWGG 2 cut(s) 247, 364
Eco147I AGGCCT 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 225, 333
Eco47III AGCGCT 1 cut(s) 553
Eco52I CGGCCG 1 cut(s) 277
Eco81I CCTNAGG 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 727
EcoO109I RGGNCCY 1 cut(s) 333
EcoO65I GGTNACC 1 cut(s) 727
EcoRII CCWGG 3 cut(s) 127, 414, 575
EcoT14I CCWWGG 2 cut(s) 247, 364
EcoT38I GRGCYC 1 cut(s) 608
ErhI CCWWGG 2 cut(s) 247, 364
FaeI CATG 5 cut(s) 37, 251, 490, 524, 657
FaiI YATR 7 cut(s) 35, 249, 488, 522, 655, 675, 681
FaqI GGGAC 2 cut(s) 346, 516
FatI CATG 5 cut(s) 33, 247, 486, 520, 653
FauI CCCGC 2 cut(s) 222, 323
FblI GTMKAC 1 cut(s) 402
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 608
FspBI CTAG 2 cut(s) 65, 161
GlaI GCGC 3 cut(s) 145, 286, 553
GsaI CCCAGC 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 7 cut(s) 127, 150, 197, 273, 279, 324, 419
HapII CCGG 5 cut(s) 228, 291, 447, 465, 529
HhaI GCGC 3 cut(s) 146, 287, 554
Hin1II CATG 5 cut(s) 37, 251, 490, 524, 657
Hin6I GCGC 3 cut(s) 144, 285, 552
HinP1I GCGC 3 cut(s) 144, 285, 552
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 1 cut(s) 263
HpaII CCGG 5 cut(s) 228, 291, 447, 465, 529
HphI GGTGA 5 cut(s) 169, 305, 352, 721, 734
Hpy166II GTNNAC 1 cut(s) 403
Hpy188III TCNNGA 1 cut(s) 521
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 3 cut(s) 392, 404, 407
HpyAV CCTTC 3 cut(s) 268, 574, 742
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 3 cut(s) 60, 390, 723
HpyCH4V TGCA 9 cut(s) 100, 111, 456, 471, 546, 588, 618, 653, 708
HpyF3I CTNAG 3 cut(s) 14, 268, 609
HpySE526I ACGT 3 cut(s) 60, 390, 723
Hsp92II CATG 5 cut(s) 37, 251, 490, 524, 657
HspAI GCGC 3 cut(s) 144, 285, 552
KflI GGGWCCC 1 cut(s) 333
KspI CCGCGG 1 cut(s) 277
Kzo9I GATC 3 cut(s) 357, 639, 685
LmnI GCTCC 2 cut(s) 449, 603
Lsp1109I GCAGC 6 cut(s) 123, 269, 468, 572, 606, 637
LweI GCATC 1 cut(s) 480
MaeI CTAG 2 cut(s) 65, 161
MaeII ACGT 3 cut(s) 60, 390, 723
MaeIII GTNAC 3 cut(s) 20, 293, 727
MalI GATC 3 cut(s) 359, 641, 687
MboI GATC 3 cut(s) 357, 639, 685
MboII GAAGA 2 cut(s) 304, 634
MflI RGATCY 1 cut(s) 639
MhlI GDGCHC 2 cut(s) 497, 608
MlsI TGGCCA 2 cut(s) 127, 419
MluNI TGGCCA 2 cut(s) 127, 419
MlyI GAGTC 1 cut(s) 257
Mox20I TGGCCA 2 cut(s) 127, 419
MscI TGGCCA 2 cut(s) 127, 419
MslI CAYNNNNRTG 2 cut(s) 32, 252
Msp20I TGGCCA 2 cut(s) 127, 419
MspA1I CMGCKG 2 cut(s) 276, 282
MspI CCGG 5 cut(s) 228, 291, 447, 465, 529
MspR9I CCNGG 4 cut(s) 129, 416, 466, 577
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 3 cut(s) 129, 416, 577
MvnI CGCG 2 cut(s) 276, 714
NciI CCSGG 1 cut(s) 466
NcoI CCATGG 1 cut(s) 247
NdeII GATC 3 cut(s) 357, 639, 685
NlaIII CATG 5 cut(s) 37, 251, 490, 524, 657
NlaIV GGNNCC 4 cut(s) 334, 335, 445, 605
NmeAIII GCCGAG 2 cut(s) 306, 379
NmuCI GTSAC 2 cut(s) 293, 727
NotI GCGGCCGC 1 cut(s) 277
NspI RCATGY 1 cut(s) 657
PagI TCATGA 1 cut(s) 520
PceI AGGCCT 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 290
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Ppu21I YACGTR 1 cut(s) 724
PpuMI RGGWCCY 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 3 cut(s) 127, 414, 575
PspEI GGTNACC 1 cut(s) 727
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 3 cut(s) 127, 414, 575
PspN4I GGNNCC 4 cut(s) 334, 335, 445, 605
PspPI GGNCC 2 cut(s) 225, 333
PspPPI RGGWCCY 1 cut(s) 333
PsuI RGATCY 1 cut(s) 639
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 2 cut(s) 32, 252
SacII CCGCGG 1 cut(s) 277
SalI GTCGAC 1 cut(s) 401
Sau3AI GATC 3 cut(s) 357, 639, 685
Sau96I GGNCC 2 cut(s) 225, 333
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 4 cut(s) 129, 416, 466, 577
SduI GDGCHC 2 cut(s) 497, 608
SfaNI GCATC 1 cut(s) 480
SfcI CTRYAG 1 cut(s) 316
Sfr303I CCGCGG 1 cut(s) 277
SgrAI CRCCGGYG 1 cut(s) 290
SgrBI CCGCGG 1 cut(s) 277
SgrDI CGTCGACG 1 cut(s) 401
SinI GGWCC 2 cut(s) 225, 333
SmiMI CAYNNNNRTG 2 cut(s) 32, 252
SseBI AGGCCT 1 cut(s) 197
SspMI CTAG 2 cut(s) 65, 161
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 4 cut(s) 127, 414, 464, 575
StyI CCWWGG 2 cut(s) 247, 364
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 3 cut(s) 63, 393, 726
TaqI TCGA 2 cut(s) 261, 402
TauI GCSGC 7 cut(s) 276, 279, 282, 303, 306, 324, 717
TscAI CASTG 2 cut(s) 126, 595
TseFI GTSAC 2 cut(s) 293, 727
TseI GCWGC 7 cut(s) 5, 111, 282, 456, 585, 594, 650
Tsp45I GTSAC 2 cut(s) 293, 727
TspRI CASTG 2 cut(s) 126, 595
VpaK11BI GGWCC 2 cut(s) 225, 333
XceI RCATGY 1 cut(s) 657
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 2 cut(s) 65, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.